Timeline
Aug 2, 2007:
- 2:03 PM Ticket #707 (Can't unlink items that have been put in the trashcan) created by
- Items that have been marked for removal can't be unlinked with other …
- 12:37 PM Changeset [3623] by
- References #706 Added average for genepix.flags
- 12:36 PM Tickets #700,590 batch updated by
- fixed: (In [3622]) Fixes #700, #590
- 12:36 PM Changeset [3622] by
- Fixes #700, #590
- 12:09 PM Ticket #669 (Add possibility to set average method to fomulas and extravalues from ...) closed by
- fixed: (In [3621]) Fixes #669
- 12:09 PM Changeset [3621] by
- Fixes #669
- 11:59 AM Ticket #669 (Add possibility to set average method to fomulas and extravalues from ...) reopened by
- NullPointerException? when creating a formula type that shouldn't have …
- 11:40 AM Ticket #706 (Averagemethod on raw data types) created by
- Go through the raw-data-types.xml and add appropriate average method …
- 8:40 AM Ticket #705 (Add preset to "Test with file" for regular expression that can split a ...) closed by
- fixed: (In [3620]) Fixes #705: Add preset to "Test with file" for regular …
- 8:40 AM Changeset [3620] by
- Fixes #705: Add preset to "Test with file" for regular expression that …
- 8:22 AM Ticket #705 (Add preset to "Test with file" for regular expression that can split a ...) created by
- This regexp seems to work: […] Thanks to Raimond Brookman …
Aug 1, 2007:
- 2:13 PM Ticket #704 (Make sure DbControl is closed from www/common/import/index.jsp) created by
- The following stack trace appears in Tomcat log file: […]
- 1:35 PM Changeset [3619] by
- Include test for selecting a parameter expression in SQL: SELECT …
- 1:19 PM Ticket #702 (Add lineNum() function(s) to mapping expressions supported by the ...) closed by
- fixed: (In [3618]) Fixes #702: Add lineNum() function(s) to mapping …
- 1:19 PM Changeset [3618] by
- Fixes #702: Add lineNum() function(s) to mapping expressions supported …
- 12:05 PM Ticket #703 (Error message when loading invalid XML files doesn't include the file name) closed by
- fixed: (In [3617]) Fixes #703: Error message when loading invalid XML files …
- 12:05 PM Changeset [3617] by
- Fixes #703: Error message when loading invalid XML files doesn't …
- 10:40 AM Ticket #703 (Error message when loading invalid XML files doesn't include the file name) created by
- For example: […]
- 10:02 AM Ticket #702 (Add lineNum() function(s) to mapping expressions supported by the ...) created by
- With this function we can import data and use the current line number …
- 9:53 AM Ticket #701 (JarClassLoader should be able to auto-reload based on timestamp) created by
- This would simplify plug-in development since you would only have to …
- 8:49 AM Changeset [3616] by
- References #698: Fix Javadoc warnings Removed all existing warnings. …
Jul 31, 2007:
- 3:34 PM Ticket #700 (BioAssayExporter basefile: make it use merge on reporter) created by
- The exporter should be able to merge on reporter.
- 2:45 PM Ticket #691 (Make LowessNormalization and MedianRatioNormalization extend ...) closed by
- fixed: (In [3615]) Fixes #691: Make LowessNormalization? and …
- 2:45 PM Changeset [3615] by
- Fixes #691: Make LowessNormalization? and MedianRatioNormalization? …
- 2:14 PM Changeset [3614] by
- Fixes #699
- 2:14 PM Ticket #699 (BioAssayExporter basefile: Wrong number of columns) closed by
- fixed: (In [3614]) Fixes #699
- 2:05 PM Ticket #699 (BioAssayExporter basefile: Wrong number of columns) created by
- When exporting matrix not merged on reporter there is wrong number of …
- 1:56 PM Changeset [3613] by
- Fixes #673
- 1:56 PM Ticket #673 (BioAssayExporter basefile: Wrong count in section spots) closed by
- fixed: (In [3613]) Fixes #673
- 12:57 PM Changeset [3612] by
- References #595: Write "Appendix: extended-properties.xml reference" …
- 9:54 AM Changeset [3611] by
- References #191: Added callto: link to skype contact
- 9:07 AM DeveloperInformation edited by
- Example plug-ins download has changed location (diff)
Jul 27, 2007:
- 2:53 PM Changeset [3610] by
- References #360: Make subsections on view pages hideable …
- 2:42 PM Changeset [3609] by
- refs #551 - replaced it's with its where appropriate
- 10:41 AM Changeset [3608] by
- Fixes #498: Move Array batches on Array design view page
- 10:41 AM Ticket #498 (Move Array batches on Array design view page) closed by
- fixed: (In [3608]) Fixes #498: Move Array batches on Array design view page
- 9:38 AM Changeset [3607] by
- References #551: Write "Plugin developer" section Now ready for reading.
- 9:19 AM Ticket #698 (Fix Javadoc warnings) created by
- 8:30 AM Ticket #697 (Uploading and unpacking a compressed file corrupts the file) closed by
- fixed: (In [3606]) Fixes #697: Uploading and unpacking a compressed file …
- 8:30 AM Changeset [3606] by
- Fixes #697: Uploading and unpacking a compressed file corrupts the file
Jul 26, 2007:
- 5:44 PM Changeset [3605] by
- improved spelling
- 1:32 PM Ticket #697 (Uploading and unpacking a compressed file corrupts the file) created by
- This is the scenario: * Upload a zip file to BASE * Choose to …
- 1:21 PM Ticket #257 (Fix the Jep.nodeToExpression method) closed by
- fixed: (In [3604]) Fixes #257: Fix the Jep.nodeToExpression method
- 1:21 PM Changeset [3604] by
- Fixes #257: Fix the Jep.nodeToExpression method
- 11:56 AM Changeset [3603] by
- Undo last commit which was done by accident.
- 11:52 AM Changeset [3602] by
Jul 25, 2007:
- 5:09 PM Changeset [3601] by
- References #692: Fixes possible NullPointerException? in update
- 1:14 PM Ticket #480 (Verify values in extended-properties.xml and raw-data-types.xml) closed by
- fixed: (In [3600]) Fixes #480: Verify values in extended-properties.xml and …
- 1:14 PM Changeset [3600] by
- Fixes #480: Verify values in extended-properties.xml and raw-data-types.xml
- 8:26 AM Ticket #696 (Change icon for 'hidden filter' warning) closed by
- fixed: (In [3599]) Fixes #696: Change icon for 'hidden filter' warning
- 8:26 AM Changeset [3599] by
- Fixes #696: Change icon for 'hidden filter' warning
- 8:26 AM Ticket #696 (Change icon for 'hidden filter' warning) created by
- The current icon doesn't give much impression of a warning.
- 8:19 AM Ticket #566 (Plugins using the flat file parser should warn about complex column ...) closed by
- fixed: (In [3598]) Fixes #566: Plugins using the flat file parser should warn …
- 8:19 AM Changeset [3598] by
- Fixes #566: Plugins using the flat file parser should warn about …
- 7:55 AM Ticket #655 (Plugins -> defintions fails with 'illegal attempt to dereference ...) closed by
- fixed: (In [3597]) Fixes #655: Plugins -> defintions fails with 'illegal …
- 7:55 AM Changeset [3597] by
- Fixes #655: Plugins -> defintions fails with 'illegal attempt to …
- 3:08 AM Ticket #695 (implement run method in AbstractPlugin??) created by
- In …
Jul 24, 2007:
- 2:14 PM Ticket #654 (Batch deletion of reporters) closed by
- fixed: (In [3596]) Fixes #654: Batch deletion of reporters
- 2:14 PM Changeset [3596] by
- Fixes #654: Batch deletion of reporters
- 1:11 PM Ticket #694 (Creating a new plate event generates an exception) closed by
- fixed: (In [3595]) Fixes #694: Creating a new plate event generates an exception
- 1:11 PM Changeset [3595] by
- Fixes #694: Creating a new plate event generates an exception
- 1:05 PM Ticket #694 (Creating a new plate event generates an exception) created by
- I've got a confusing error after I made a merge of plates. I actually …
- 1:01 PM MailingLists edited by
- Changed to Mail archive for basedb-devel list (diff)
- 11:45 AM Ticket #566 (Plugins using the flat file parser should warn about complex column ...) reopened by
- The 'Complex column mapping' parameter is sneaking itself into the …
- 11:41 AM Ticket #655 (Plugins -> defintions fails with 'illegal attempt to dereference ...) reopened by
- I can now get this error when: 1. I try to use an import plug-in and …
- 10:57 AM Changeset [3594] by
- Fixes #626: Remove base1executor any to any links
- 10:57 AM Ticket #626 (Remove base1executor any to any links) closed by
- fixed: (In [3594]) Fixes #626: Remove base1executor any to any links
- 10:56 AM MailingLists edited by
- Link to Mail Archive instead of SourceForge? for basedb-users list archive (diff)
- 9:55 AM Ticket #692 (Jobs that are part of an experiment should use permissions from that ...) closed by
- fixed: (In [3593]) Fixes #692: Jobs that are part of an experiment should use …
- 9:55 AM Changeset [3593] by
- Fixes #692: Jobs that are part of an experiment should use permissions …
Jul 23, 2007:
- 2:57 PM Ticket #687 (Make it possible for other plug-ins than the FormulaFilter to be ...) closed by
- fixed: (In [3592]) Fixes #687: Make it possible for other plug-ins than the …
- 2:57 PM Changeset [3592] by
- Fixes #687: Make it possible for other plug-ins than the FormulaFilter? …
- 2:04 PM Changeset [3591] by
- References #551. Moved doc about secondary storage controllers from …
- 1:14 PM Ticket #451 (Zipped download) reopened by
- I have made some tests and there are some remaining issues: 1. If I …
- 12:43 PM Ticket #688 (Don't use Float.valueOf() or Float.parseString() to parse integer values) closed by
- fixed: (In [3590]) Fixes #688: Don't use Float.valueOf() or …
- 12:43 PM Changeset [3590] by
- Fixes #688: Don't use Float.valueOf() or Float.parseString() to parse …
- 11:44 AM Changeset [3589] by
- Fixes #693: Select import plug-in dialog should not display …
- 11:44 AM Ticket #693 (Select import plug-in dialog should not display auto-detect option in ...) closed by
- fixed: (In [3589]) Fixes #693: Select import plug-in dialog should not …
- 11:37 AM Ticket #693 (Select import plug-in dialog should not display auto-detect option in ...) created by
- There are three requirements for this bug to be seen: 1. The plug-in …
- 11:28 AM Ticket #326 (Mass annotation plug-in) closed by
- fixed: (In [3588]) Fixes #326: Mass annotation plug-in
- 11:28 AM Changeset [3588] by
- Fixes #326: Mass annotation plug-in
Jul 22, 2007:
Jul 20, 2007:
- 6:50 PM Ticket #692 (Jobs that are part of an experiment should use permissions from that ...) created by
- In the current situation, only the user that created the job has …
- 3:45 PM Changeset [3587] by
- References #686 Two more coreplugins are updated …
- 3:36 PM Ticket #691 (Make LowessNormalization and MedianRatioNormalization extend ...) created by
- These plugins should extend AbstractAnalysisPlugin? instead of …
- 2:40 PM Changeset [3586] by
- References #326: Mass annotation plug-in Major features in place. …
- 12:27 PM Ticket #685 (Add plugin parameter asking for bioassays to AbstractAnalysisPlugin) closed by
- fixed: (In [3585]) Fixes #685 The documentation is done
- 12:27 PM Changeset [3585] by
- Fixes #685 The documentation is done
- 12:09 PM Changeset [3584] by
- References #686 Updated gui contexts in JepExtraValueCalculator? to …
- 11:44 AM Changeset [3583] by
- References #686 Jep Formula Filter and JepExtraValueCalculator? can now …
- 9:29 AM Ticket #685 (Add plugin parameter asking for bioassays to AbstractAnalysisPlugin) reopened by
- How about the documentation…
- 8:28 AM Changeset [3582] by
- Reverting build.xml, accidental last checkin of build.xml
- 8:23 AM Changeset [3581] by
- Merged log:trunk#3533:3580 into the wwebservices branch.
- 8:02 AM Changeset [3580] by
- Fixes #690: Not allowed to read Extra value type
- 8:02 AM Ticket #690 (Not allowed to read Extra value type) closed by
- fixed: (In [3580]) Fixes #690: Not allowed to read Extra value type
- 7:41 AM Ticket #690 (Not allowed to read Extra value type) reopened by
- Found a few more places where there is the same problem
Jul 19, 2007:
- 11:11 PM Changeset [3579] by
- Fixed incorrect tooltip for "Extra value types" menu item
- 11:10 PM Ticket #690 (Not allowed to read Extra value type) closed by
- fixed: (In [3578]) Fixes #690: Not allowed to read Extra value type
- 11:10 PM Changeset [3578] by
- Fixes #690: Not allowed to read Extra value type
- 6:33 PM Changeset [3577] by
- fixed typo in docs
- 3:48 PM Changeset [3576] by
- References #451 Avoid null pointer exception
- 3:42 PM Changeset [3575] by
- Fixes #685 Add plugin parameter asking for bioassays to …
- 3:42 PM Ticket #685 (Add plugin parameter asking for bioassays to AbstractAnalysisPlugin) closed by
- fixed: (In [3575]) Fixes #685 Add plugin parameter asking for bioassays to …
- 2:46 PM Ticket #690 (Not allowed to read Extra value type) created by
- I've loaded an experiment as an administrator, all within a project. …
- 1:01 PM Ticket #689 (Increase 99 hits per page limit (list views)) created by
- I found that sharing via projects isn't exactly what I need (the other …
- 12:31 PM Changeset [3574] by
- References #658: Compare requestId as strings instead of integers to …
- 11:48 AM Ticket #688 (Don't use Float.valueOf() or Float.parseString() to parse integer values) created by
- A float doesn't have enough precision to be able to parse with correct …
- 9:49 AM Changeset [3573] by
- References #680: Fixed a bug that caused the column mapping tab to …
- 9:16 AM Changeset [3572] by
- Fixes #451 This plugin is now installed with BASE as a core plugin and …
- 9:16 AM Ticket #451 (Zipped download) closed by
- fixed: (In [3572]) Fixes #451 This plugin is now installed with BASE as a …
- 8:47 AM Changeset [3571] by
- References #451 Some minor bugs are fixed.
- 8:45 AM Changeset [3570] by
- References #551. Moved (and updated) documentation about analysis …
- 8:29 AM Ticket #684 (AbstractAnalysisPlugin should not include [Item.BIOASSAYS, Type.LIST] ...) closed by
- fixed: (In [3569]) Fixes #684: AbstractAnalysisPlugin? should not include …
- 8:29 AM Changeset [3569] by
- Fixes #684: AbstractAnalysisPlugin? should not include [Item.BIOASSAYS, …
- 8:23 AM Ticket #687 (Make it possible for other plug-ins than the FormulaFilter to be ...) created by
- To make this work we need to create an interface (say …
- 8:19 AM Ticket #686 (Make it possible for core analysis plug-ins to work on a subset of ...) created by
- Once ticket #685 is in place it should not be so difficult. The core …
- 8:15 AM Ticket #685 (Add plugin parameter asking for bioassays to AbstractAnalysisPlugin) created by
- This will make it easier to implement plug-ins that only work on a …
- 7:42 AM Ticket #684 (AbstractAnalysisPlugin should not include [Item.BIOASSAYS, Type.LIST] ...) created by
- This context is optional and is not supported by all plug-ins.
Jul 18, 2007:
- 10:58 PM Ticket #683 (Holding down SHIFT, CTRL or ALT when creating a new item should ...) created by
- Bob MacCallum? wrote: > I don't know if this would be dangerous, but …
- 3:46 PM Changeset [3568] by
- References #451 Packer plugin for zip, tar.gz and tar.bz2 format …
- 2:43 PM Ticket #655 (Plugins -> defintions fails with 'illegal attempt to dereference ...) closed by
- worksforme: I am not able to reproduce this
- 2:41 PM Ticket #670 (Update doc on formulas and extravalues) closed by
- invalid: There is no documentation written that can be updated.
- 2:39 PM Ticket #682 (Object with id: 3 was not of the specified subclass: ...) closed by
- duplicate: Duplicate of #509. This is a problem with MySQL. You have the …
- 1:54 PM Ticket #682 (Object with id: 3 was not of the specified subclass: ...) created by
- Hi! After BASE2 first start i loaded some plugin for Affy (RMA e …
- 11:42 AM Changeset [3567] by
- Fixes #681
- 11:42 AM Ticket #681 (Plug-in configuration wizard may use invalid default value for item ...) closed by
- fixed: (In [3567]) Fixes #681
- 11:39 AM Ticket #681 (Plug-in configuration wizard may use invalid default value for item ...) created by
- The plug-in/job configuration wizard automatically selects the item …
- 10:41 AM Tickets #678,679,680 batch updated by
- fixed: (In [3566]) Fixes #678, #679, #680
- 10:41 AM Changeset [3566] by
- Fixes #678, #679, #680
- 9:48 AM Ticket #680 (The 'Test with file' function tries to map columns, even if the parent ...) created by
- 9:44 AM Ticket #679 (The 'Test with file' function should take the file to test from the ...) created by
- Currently, only the regular expressions, and other parser settings are …
- 9:42 AM Ticket #678 (The 'Test with file' function doesn't clear values from parent form) created by
- 1. Enter a plug-in configuration sequence for one of the flat file …
Jul 17, 2007:
- 1:33 PM Changeset [3565] by
- References #551: Moved doc about import plug-ins from old to new …
- 11:28 AM Changeset [3564] by
- Fixes #675, #676 and #677
- 11:28 AM Tickets #675,676,677 batch updated by
- fixed: (In [3564]) Fixes #675, #676 and #677
- 9:56 AM Ticket #677 (The auto detect file format function doesn't use Plugin.isInContext ...) created by
- 9:54 AM Ticket #676 (The autodetect file format function doesn't check ...) created by
- 9:53 AM Ticket #675 (The autodetect file format function never calls Plugin.done()) created by
Jul 16, 2007:
- 2:47 PM Ticket #470 (Improve batch upload to support tar:ed files) closed by
- fixed: (In [3563]) Fixes #470
- 2:46 PM Changeset [3563] by
- Fixes #470
- 2:35 PM Tickets #649,674 batch updated by
- fixed: (In [3562]) Fixes #649 and #674
- 2:35 PM Changeset [3562] by
- Fixes #649 and #674
- 2:16 PM Ticket #674 (Add possibility to set average method for extended properties and raw ...) created by
- Relates to #648 and #649
- 12:04 PM Changeset [3561] by
- Fixes #672: Enable AnnotationRestriction? to be used on joined tables
- 12:04 PM Ticket #672 (Enable AnnotationRestriction to be used on joined tables) closed by
- fixed: (In [3561]) Fixes #672: Enable AnnotationRestriction? to be used on …
- 12:02 PM Changeset [3560] by
- References #573. Must also trim annotation values or the filter will …
- 9:55 AM Changeset [3559] by
- References #625. Use correct plugin configuration.
- 9:44 AM Changeset [3558] by
- Fixes #669
- 9:44 AM Ticket #669 (Add possibility to set average method to fomulas and extravalues from ...) closed by
- fixed: (In [3558]) Fixes #669
- 9:01 AM Changeset [3557] by
- Fixes #648
- 9:01 AM Ticket #648 (Average method for formulas and extra values) closed by
- fixed: (In [3557]) Fixes #648
- 8:57 AM Ticket #648 (Average method for formulas and extra values) reopened by
- The update sets the average method to geometric mean for all formulas …
- 8:43 AM Tickets #650,648 batch updated by
- fixed: (In [3556]) Fixes #648 and #650
- 8:43 AM Changeset [3556] by
- Fixes #648 and #650
- 8:21 AM Ticket #648 (Average method for formulas and extra values) reopened by
- Add @since to javadoc for new methods.
- 8:18 AM Ticket #650 (Geometric mean) reopened by
- Add correct @version number in javadoc.
Jul 13, 2007:
- 4:29 PM Changeset [3555] by
- Reference #451 The actual compression is not quite written yet.
Jul 12, 2007:
- 4:46 PM Ticket #673 (BioAssayExporter basefile: Wrong count in section spots) created by
- The header count is wrong in section spots when a matrix is exported. …
- 4:28 PM Ticket #671 (Exporting basefiles - the last line of the bioassay set is absent) closed by
- fixed: (In [3554]) Fixes #671, References #590 Test for BioAssaySetExporter? …
- 4:28 PM Changeset [3554] by
- Fixes #671, References #590 Test for BioAssaySetExporter? added which …
Jul 10, 2007:
- 8:26 PM Ticket #672 (Enable AnnotationRestriction to be used on joined tables) created by
- For example, the query below gives a stracktrace, since annotations …
Jul 9, 2007:
- 12:45 PM Ticket #375 (Shared items: the shareness of items should be listed in the ...) closed by
- fixed: Decided after a closer look to not change the view-pages.
- 11:39 AM Changeset [3553] by
- References #375. The list pages is done but the view pages should be …
Jul 6, 2007:
- 4:53 PM Changeset [3552] by
- References #375. Only wants to do a commit before the weekend.
- 2:03 PM Ticket #671 (Exporting basefiles - the last line of the bioassay set is absent) created by
- Greetings! I've discovered a problem with exporting BASEfiles. I …
Jul 5, 2007:
- 4:20 PM Changeset [3551] by
- References #375. Added column with projects, groups, users that an …
- 1:18 PM Ticket #611 (Improvements of Trashcan) closed by
- fixed: (In [3550]) Fixes #611 Improvements of Trashcan. Changed confusing …
- 1:18 PM Changeset [3550] by
- Fixes #611 Improvements of Trashcan. Changed confusing button …
Jul 4, 2007:
- 2:59 PM Changeset [3549] by
- References #611. Added new icon and text on the delete button in …
- 11:36 AM Changeset [3548] by
- References #375.Missed one view-page in the last commit
Jul 3, 2007:
- 11:41 AM Changeset [3547] by
- References #375. The first part is done, listing which …
- 11:26 AM Ticket #470 (Improve batch upload to support tar:ed files) reopened by
- Section 8.2.1 Uploading a new file. Update the information on …
- 11:17 AM Ticket #670 (Update doc on formulas and extravalues) created by
- Depends on #669, #546 Update documentation on formulas and …
- 11:12 AM Ticket #669 (Add possibility to set average method to fomulas and extravalues from ...) created by
- Depends on #648
- 10:53 AM Ticket #668 (Displaying icons in the text) created by
- Icons are displayed in different ways in the text. …
- 10:39 AM Ticket #667 (Move ch. 7 to a lower level) created by
- I think the that …
- 10:29 AM Ticket #666 (Image in chapter 6.2.3) created by
- I think an image on single-item view for a project should be added to …
- 10:05 AM Ticket #665 (Links in the documentation) created by
- I think we should discuss how the links are used in the documentations …
- 9:46 AM Ticket #664 (Remove chapter 6.1.3) created by
- I think that the section 6.1.3 Share an item to other users should be …
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