Timeline
Sep 6, 2007:
- 10:46 PM Ticket #747 (Problem trying to install RMAExpress plugin on Windows) closed by
- invalid: I think I have seen this before... It was a long time ago (before BASE …
- 9:25 PM Ticket #747 (Problem trying to install RMAExpress plugin on Windows) created by
- java.lang.ClassFormatError? on page …
- 2:56 PM Changeset [3712] by
- References #364. Most of the plugin settings can be saved now, but …
- 1:56 PM Ticket #728 (./jobagent.sh start does not work) closed by
- invalid: This is as expected. The script by default only looks in the current …
- 12:26 PM Ticket #746 (Transfer existing (data-layer) UML diagrams to latest MagicDraw) created by
- MagicDraw? now has a free "Community Edition" that is designed for open …
- 9:47 AM Changeset [3711] by
- Fixes #736: Incorrect error message is displayed if a file upload fails
- 9:47 AM Ticket #736 (Incorrect error message is displayed if a file upload fails) closed by
- fixed: (In [3711]) Fixes #736: Incorrect error message is displayed if a file …
- 9:39 AM Changeset [3710] by
- Fixes #745: NullPointerException? in File.getSize() References #628 and …
- 9:39 AM Ticket #745 (NullPointerException in File.getSize()) closed by
- fixed: (In [3710]) Fixes #745: NullPointerException? in File.getSize() …
- 9:32 AM Ticket #745 (NullPointerException in File.getSize()) created by
- I get a NullPointerException? in File.getSize() after a migration with …
- 9:28 AM Changeset [3709] by
- References #744: Make it possible to resume the migration program in …
Sep 5, 2007:
- 5:48 PM Changeset [3708] by
- References #364 Configuring the installation is allmost done.
- 11:42 AM Ticket #744 (Make it possible to resume the migration program in case of a failure) created by
- The migration program can take a very long time to run if there is a …
- 11:33 AM Ticket #743 (Scientific numbers with a + sign in the exponent are not parsed correctly) closed by
- fixed: Fixed in [3703]
- 11:33 AM Ticket #743 (Scientific numbers with a + sign in the exponent are not parsed correctly) created by
- we have noted that none of the value in the data file such as …
- 11:29 AM Changeset [3707] by
- Fixes #740: Missing AnyToAny? item causes ItemNotFoundException? when …
- 11:29 AM Ticket #740 (Missing AnyToAny item causes ItemNotFoundException when viewing a ...) closed by
- fixed: (In [3707]) Fixes #740: Missing AnyToAny? item causes …
- 9:33 AM Ticket #742 (Refactor BioAssaySetExporter) created by
- There has been requests on the mailing list to be able to subclass the …
- 9:32 AM Ticket #741 (Refactor Base1PluginExecuter) created by
- There has been requests on the mailing list to be able to subclass the …
- 9:15 AM Ticket #740 (Missing AnyToAny item causes ItemNotFoundException when viewing a ...) created by
- A transformation may have AnyToAny? links to other items (files). Due …
- 9:03 AM Ticket #739 (Base1PluginExecuter ignores leaveStdin/leaveStdout parameters) created by
- The stdin.txt is always deleted and the stdout.txt is always kept. The …
Sep 3, 2007:
- 8:34 AM Ticket #738 (Implement file upload as a pure servlet) created by
- The JSP:s used for file upload are sensitive to line breaks in the JSP …
Aug 30, 2007:
- 11:07 PM Ticket #737 (Script that fixes copyright text may also add extra new line to end of ...) created by
- I am not sure if the extra new line at the end of …
- 10:58 PM Ticket #736 (Incorrect error message is displayed if a file upload fails) created by
- The JSP page that should take care of the error and display it has a …
- 3:59 PM Changeset [3706] by
- References #364 Started updating the GUI to support auto installation …
Aug 29, 2007:
Aug 28, 2007:
- 4:42 PM Changeset [3704] by
- References #364 Moved the PluginInfo? class to another package, added a …
- 4:20 PM Ticket #735 (PermissionDeniedException on array design list view) created by
- As a normal user, another blank list view with the following in …
- 3:37 PM Ticket #734 (Un-caught NullPointerException in plugin configurations list view.) created by
- As an admin user I can create and view plugin configurations fine. As …
Aug 27, 2007:
- 12:53 PM Ticket #733 (Add support to select plugin configurations that should be imported) created by
- The plugin-configuration-importer plugin should offer a possibility …
- 10:03 AM Changeset [3703] by
- Fixes the problem with '+' before the exponent (when its 0). The '+' …
Aug 24, 2007:
- 3:37 PM Changeset [3702] by
- Addresses #732. Fixing broken basehacks link.
- 3:36 PM Changeset [3701] by
- Addresses #732. Fixing broken basehacks link.
- 1:53 PM Ticket #732 (Link to basehacks has disappeard) created by
- We need to keep a link to http://trac.thep.lu.se/trac/basehacks …
- 10:44 AM Ticket #731 (Extend mapping in Base1PluginExecuter) created by
- The mapping in the executer should be extended. For instance …
Aug 23, 2007:
- 1:42 PM Changeset [3700] by
- References #364 The main functions in core is now done for this. A …
Aug 22, 2007:
- 12:42 PM Changeset [3699] by
- URL to demo server change
- 11:11 AM WikiStart edited by
- URL to demo server change (diff)
Aug 21, 2007:
- 4:17 PM Changeset [3698] by
- References #364 Automatic install non-core plugins. First check-in, …
- 3:59 PM Changeset [3697] by
- Removed 'reference reference' repeat.
- 3:14 PM Ticket #730 (Documentation figures should be centered by default) created by
- It would also be nice to be able to have figures with text next to it …
- 2:08 PM Changeset [3696] by
- Removing obsolete branch. Superseeded by …
- 11:58 AM Changeset [3695] by
- Merged log:trunk#3650:3691 into the webservices branch.
Aug 20, 2007:
- 4:14 PM WikiStart edited by
- Added feature list. (diff)
- 4:02 PM Milestone BASE 2.4 completed
- The aim is to fix various outstanding issues. Major features such as …
- 4:02 PM Ticket #729 (./jobagent.sh should accept command `status`) created by
- status should return if the agent is running or not. Needed for …
- 3:59 PM Ticket #728 (./jobagent.sh start does not work) created by
- The response is: […] Issuing `./jobagent.sh -c …
- 3:55 PM Ticket #659 (Add wiki page describing BASE features) closed by
- fixed: First version added as http://base.thep.lu.se/wiki/Features
- 3:32 PM Features edited by
- More features. (diff)
- 3:28 PM Features created by
- First list of features.
- 3:22 PM ReleaseProcedure edited by
- More fixes to the release procedures. (diff)
- 2:58 PM ReleaseProcedure edited by
- Added link to announcement mail (diff)
- 2:51 PM DownloadPage edited by
- (diff)
- 2:49 PM ReleaseProcedure edited by
- (diff)
- 2:49 PM DownloadPage edited by
- Releasing 2.4 (diff)
- 2:22 PM Changeset [3694] by
- Changes for future release 2.4.1
- 2:18 PM ReleaseProcedure edited by
- (diff)
- 2:04 PM Changeset [3693] by
- Tagging version 2.4
- 1:56 PM Changeset [3692] by
- Preparing release 2.4
- 1:50 PM Changeset [3691] by
- Changes for future release 2.5
- 1:49 PM Changeset [3690] by
- Forking new minor version 2.4 branch.
- 1:42 PM ReleaseProcedure edited by
- Improving procedure. (diff)
- 12:04 PM Changeset [3689] by
- Fixes #615.
- 12:04 PM Ticket #615 (Write 'Installing job agents' section) closed by
- fixed: (In [3689]) Fixes #615.
- 12:03 PM Changeset [3688] by
- Updated link to release procedures.
- 12:02 PM Changeset [3687] by
- Removed links to deleted files.
- 9:34 AM Changeset [3686] by
- Refs #615 and fixed spelling.
- 9:33 AM Changeset [3685] by
- Removed obsolete files.
Aug 17, 2007:
- 4:56 PM Ticket #664 (Remove chapter 6.1.3) closed by
- fixed: (In [3684]) Fixes #664
- 4:56 PM Changeset [3684] by
- Fixes #664
- 4:28 PM Changeset [3683] by
- Spelling.
- 3:45 PM Changeset [3682] by
- Added Peter Johansson.
- 1:56 PM Changeset [3681] by
- References #721: Store data in files instead of in the database First …
- 12:04 PM Ticket #727 (Add presentations and publications to the wiki) created by
- 11:43 AM Ticket #726 (Add nice screen shots to the documentation section in the wiki.) created by
- This is for the marketing department.
- 11:26 AM Changeset [3680] by
- Removed explicit call to System.gc(). Better command line parameters …
- 11:09 AM Ticket #725 (Transfer all old documentation to the new wiki system.) created by
- 11:04 AM Ticket #695 (implement run method in AbstractPlugin??) closed by
- wontfix
- 9:18 AM Changeset [3679] by
- Changing the pesky "a (ä) character to a.
- 9:12 AM ReleaseProcedure edited by
- Added a warning about breaking UTF-8 character encoding. (diff)
- 8:29 AM Changeset [3678] by
- Require DTD files to be encoded in ISO-8859-1
Aug 16, 2007:
- 8:13 PM Changeset [3677] by
- Added copyright statement.
- 6:36 PM Changeset [3676] by
- Trying to fix illegal character problem.
- 4:47 PM WikiStart edited by
- Added link to svndigest output. (diff)
- 4:16 PM Changeset [3675] by
- Fixing copyright statements. Fixing svn properties.
- 2:52 PM ReleaseProcedure edited by
- (diff)
- 2:45 PM ReleaseProcedure edited by
- Packages moved to http://base2.thep.lu.se (diff)
- 2:40 PM DownloadPage edited by
- Moved all downloadable packages to http://base2.thep.lu.se (diff)
- 11:43 AM Changeset [3674] by
- Added Dominic to .svndigest config.
- 11:27 AM Changeset [3673] by
- Updated .svndigest config.
- 11:21 AM ReleaseProcedure edited by
- svndigest information related fixes. (diff)
- 11:01 AM Changeset [3672] by
- Removed obsolete links and information.
- 10:07 AM Ticket #656 (Update release procedure) closed by
- fixed: (In [3671]) Fixes #656. New release procedures are added to …
- 10:07 AM Changeset [3671] by
- Fixes #656. New release procedures are added to wiki:ReleaseProcedure.
- 10:04 AM ReleaseProcedure edited by
- Working on ticket:656. This is the last draft before actually trying … (diff)
- 9:33 AM ReleaseProcedure edited by
- Working on ticket:656 (diff)
- 9:30 AM DownloadPage edited by
- Typo, changed svndigest to base. (diff)
- 9:21 AM ReleaseProcedure edited by
- Working on ticket:656 (diff)
- 9:02 AM DownloadPage edited by
- Restructurred the download page. (diff)
Aug 15, 2007:
- 12:37 PM ReleaseProcedure edited by
- Working on the release procedure. Refs ticket:656 (diff)
- 12:02 PM Changeset [3670] by
- Included numbers with scientific notation in the test.
- 11:50 AM Changeset [3669] by
- Removing obsolete file.
- 11:01 AM Ticket #724 (Nullpointer exception when 'overwrite' is not set in export-plugin ...) closed by
- fixed: (In [3668]) Fixes #724 Nullpointer exception when 'overwrite' is not …
- 11:01 AM Changeset [3668] by
- Fixes #724 Nullpointer exception when 'overwrite' is not set in …
- 10:57 AM Changeset [3667] by
- Display free memory before AND after System.gc().
- 10:52 AM ReleaseProcedure created by
- Creating release procedure page. This version is stolen from …
- 10:51 AM DeveloperInformation edited by
- Adding release procedures, refs ticket:656 (diff)
- 9:46 AM Ticket #337 (Tab2Mage export plugin) closed by
- fixed: This plugin is developed and distributed through …
- 9:43 AM Ticket #338 (Tab2Mage import plugin) closed by
- fixed: This plugin is developed and distributed through …
- 9:31 AM Ticket #724 (Nullpointer exception when 'overwrite' is not set in export-plugin ...) created by
- This appear in the configuration process when no value has been …
Aug 14, 2007:
- 7:46 PM Changeset [3666] by
- References #469: Added negative numbers to test case with dirty data
- 4:55 PM WikiStart edited by
- Fixed sponsor links and images. (diff)
- 4:05 PM Ticket #723 (Update list with core plugins) closed by
- duplicate: This will be done when the core-plugin page is re-written into current …
- 2:53 PM Ticket #514 (Change permissions in Power User) closed by
- fixed: (In [3665]) Fixes #514 Change permissions in Power User
- 2:53 PM Changeset [3665] by
- Fixes #514 Change permissions in Power User
- 2:50 PM Changeset [3664] by
- Fixes #722: Create DynamicReporterQuery?
- 2:50 PM Ticket #722 (Create DynamicReporterQuery) closed by
- fixed: (In [3664]) Fixes #722: Create DynamicReporterQuery?
- 2:05 PM Ticket #723 (Update list with core plugins) created by
- The list with core plugins needs to be updated with configurations to …
- 12:47 PM Ticket #722 (Create DynamicReporterQuery) created by
- This will allow programs to load exactly the needed reporter …
- 9:21 AM Ticket #721 (Store data in files instead of in the database) created by
- As I see it there are four basic problems: 1. Make it possible to …
- 9:09 AM Changeset [3663] by
- Measure performance for reporter migration.
- 8:54 AM Changeset [3662] by
- Fixes #551 Read "Plugin developer" section
- 8:54 AM Ticket #551 (Read "Plugin developer" section) closed by
- fixed: (In [3662]) Fixes #551 Read "Plugin developer" section
- 8:15 AM Changeset [3661] by
- References #720: Progress reporter when emptying trashcan Progress …
Aug 13, 2007:
- 1:09 PM Ticket #595 (Read "Appendix: extended-properties.xml reference") closed by
- fixed: (In [3660]) Fixes #595 Read "Appendix: extended-properties.xml reference"
- 1:09 PM Changeset [3660] by
- Fixes #595 Read "Appendix: extended-properties.xml reference"
- 12:55 PM Changeset [3659] by
- References #294: Performance testing Added framework for testing BASE …
- 11:44 AM Changeset [3658] by
- Show stacktrace when a plug-in reports an error
- 11:26 AM Changeset [3657] by
- Migrate reporters first.
- 10:57 AM Ticket #686 (Make it possible for core analysis plug-ins to work on a subset of ...) closed by
- wontfix
- 10:48 AM Ticket #445 (Plug-in writers should check that the plug-in has the proper ...) closed by
- wontfix: Plug-ins should check that it has proper credential before it starts …
- 8:03 AM Ticket #719 (Add support for JEP if() function) closed by
- fixed: (In [3656]) Fixes #719: Add support for JEP if() function
- 8:03 AM Changeset [3656] by
- Fixes #719: Add support for JEP if() function
Aug 10, 2007:
- 2:22 PM Ticket #720 (Progress reporter when emptying trashcan) closed by
- fixed: (In [3655]) Fixes #720: Progress reporter when emptying trashcan
- 2:22 PM Changeset [3655] by
- Fixes #720: Progress reporter when emptying trashcan
- 1:26 PM Changeset [3654] by
- Copying another missing file from trunk.
- 12:59 PM Changeset [3653] by
- Merged log:trunk#3581:3649 into the wwebservices branch.
- 12:53 PM Changeset [3652] by
- Adding missing files. These files exist in trunk but was not included …
- 12:17 PM Changeset [3651] by
- Fixed svn properties issues.
- 11:46 AM Changeset [3650] by
- Fixed performance problem with reporter migration. Added support for …
- 9:10 AM Changeset [3649] by
- Make sure list of formulas get loaded to avoid …
- 8:48 AM Ticket #720 (Progress reporter when emptying trashcan) created by
- Emptying the trashcan can take a very long time. Right now it is hard …
Aug 9, 2007:
- 4:28 PM Changeset [3648] by
- refs #639 removing the exportPlainMatrix method.
- 3:03 PM Ticket #719 (Add support for JEP if() function) created by
- JEP supports an if() function with the following syntax: …
- 11:11 AM Changeset [3647] by
- Fixes #718: BioAssaySet? tries to calculate number of spots and …
- 11:11 AM Ticket #718 (BioAssaySet tries to calculate number of spots and reporter on ...) closed by
- fixed: (In [3647]) Fixes #718: BioAssaySet? tries to calculate number of spots …
- 9:46 AM Changeset [3646] by
- References #451: Zipped download Fixed test program and added it to …
Aug 8, 2007:
- 7:43 PM Ticket #718 (BioAssaySet tries to calculate number of spots and reporter on ...) created by
- Stop with the following stack trace: […] The …
- 7:28 PM Changeset [3645] by
- refs #639 stupid version of exportPureMatrix method that simply …
- 2:45 PM Ticket #716 (Plugin configuration import should be able ot set the permission on ...) closed by
- fixed: (In [3644]) Fixes #716: Plugin configuration import should be able ot …
- 2:45 PM Changeset [3644] by
- Fixes #716: Plugin configuration import should be able ot set the …
- 2:32 PM Changeset [3643] by
- Fixes #451: Zipped download Added user and plug-in developer documentation
- 2:32 PM Ticket #451 (Zipped download) closed by
- fixed: (In [3643]) Fixes #451: Zipped download Added user and plug-in …
- 1:42 PM Changeset [3642] by
- Fixes #715: Install should set same permission on plugin …
- 1:42 PM Ticket #715 (Install should set same permission on plugin configurations as on the ...) closed by
- fixed: (In [3642]) Fixes #715: Install should set same permission on plugin …
- 1:38 PM Ticket #717 (Make initdb, updatedb and other scripts accept a username) created by
- The current implementation forces the root user account to be named …
- 1:32 PM Changeset [3641] by
- References #451: Zipped download Major redesign of the packing …
- 12:59 PM Ticket #716 (Plugin configuration import should be able ot set the permission on ...) created by
- This should probably be an option in the wizard. See also ticket #715.
- 12:57 PM Ticket #715 (Install should set same permission on plugin configurations as on the ...) created by
Aug 7, 2007:
- 5:20 PM Changeset [3640] by
- a plugin can have no parameters
- 3:44 PM Ticket #714 (Base1PluginExecutor.JobParameter.toString() may generate incorrect XML) closed by
- fixed: (In [3639]) Fixes #714
- 3:44 PM Changeset [3639] by
- Fixes #714
- 12:09 PM Ticket #625 (Improve error/warning message display when selecting plug-ins) closed by
- fixed
- 12:08 PM Ticket #698 (Fix Javadoc warnings) closed by
- fixed
- 12:07 PM Ticket #663 (TOC is to big) closed by
- wontfix
- 12:06 PM Ticket #504 (Use different icon for inherited annotations in the tree in Experiment ...) closed by
- wontfix
- 11:35 AM Ticket #714 (Base1PluginExecutor.JobParameter.toString() may generate incorrect XML) created by
- The Base1PluginExecutor.JobParameter?.toString() method is used to …
- 11:30 AM Ticket #713 (Differences in the configuration file from base1) closed by
- fixed: (In [3638]) Fixes #713: Differences in the configuration file from base1
- 11:30 AM Changeset [3638] by
- Fixes #713: Differences in the configuration file from base1
- 11:17 AM Ticket #710 (Allow subclasses to AbstractFlatFileParser to participate in ...) closed by
- fixed: (In [3637]) Fixes #710: Allow subclasses to AbstractFlatFileParser? to …
- 11:17 AM Changeset [3637] by
- Fixes #710: Allow subclasses to AbstractFlatFileParser? to participate …
- 11:13 AM Changeset [3636] by
- References #486: Added Jeremy Davis-Turak to credits.txt for helping …
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