Timeline
Sep 17, 2007:
- 8:13 PM Ticket #765 (Deleting an Affymetrix raw bioassay from trashcan generates ...) created by
- Dominic Oyeniran wrote: > I am experiencing the problem with deletion …
- 3:14 PM Changeset [3746] by
- References #655: Plugins -> defintions fails with 'illegal attempt to …
- 3:07 PM Changeset [3745] by
- Fixes #752: Configuration parameters not preserved when Plugin …
- 3:07 PM Ticket #752 (Configuration parameters not preserved when Plugin configuration copied) closed by
- fixed: (In [3745]) Fixes #752: Configuration parameters not preserved when …
- 3:07 PM Ticket #764 (Selecting Bioassays in the plot tool.) created by
- Suggested enhancements for plot functionality would enable useful plot …
- 3:04 PM Changeset [3744] by
- Fixes #763
- 3:04 PM Ticket #763 (Unresolved id:s in documentation) closed by
- fixed: (In [3744]) Fixes #763
- 3:03 PM Ticket #763 (Unresolved id:s in documentation) reopened by
- The links don't work to terms inside varlistentry
- 2:47 PM Changeset [3743] by
- Fixes #753: NullPointerException? in plugin configuration list
- 2:47 PM Ticket #753 (NullPointerException in plugin configuration list) closed by
- fixed: (In [3743]) Fixes #753: NullPointerException? in plugin configuration list
- 2:16 PM RobotsTxt edited by
- (diff)
- 2:01 PM Ticket #734 (Un-caught NullPointerException in plugin configurations list view.) closed by
- duplicate: Duplicate of ticket:753
- 1:40 PM DeveloperInformation edited by
- (diff)
- 1:25 PM WikiStart edited by
- Only show latest docs on first page. (diff)
- 1:16 PM Changeset [3742] by
- Fixes #735: PermissionDeniedException? on array design list view
- 1:16 PM Ticket #735 (PermissionDeniedException on array design list view) closed by
- fixed: (In [3742]) Fixes #735: PermissionDeniedException? on array design list view
- 1:16 PM Ticket #763 (Unresolved id:s in documentation) closed by
- wontfix: Seems to be some problem in the pdf-generator because the ids exists …
- 1:10 PM Ticket #758 (Store number of features in a database column of ArrayDesign) closed by
- fixed: (In [3741]) Fixes #758: Store number of features in a database column …
- 1:10 PM Changeset [3741] by
- Fixes #758: Store number of features in a database column of ArrayDesign?
- 1:08 PM Ticket #763 (Unresolved id:s in documentation) created by
- There are some complaints about unresolved ids when generating the …
- 12:58 PM Ticket #733 (Add support to select plugin configurations that should be imported) closed by
- fixed: (In [3740]) Fixes #733 Documentation
- 12:58 PM Changeset [3740] by
- Fixes #733 Documentation
- 9:48 AM WikiStart edited by
- Documentation moved somewhat to make place for trunk and latest stable … (diff)
- 9:29 AM Changeset [3739] by
- Removed invalid help info regarding 'ant doc' and 'ant docbook'.
- 9:29 AM Changeset [3738] by
- Removed invalid help info regarding 'ant doc' and 'ant docbook'.
- 9:23 AM Changeset [3737] by
- Added modified AffxFusion?.jar that can read from InputStream? for some …
Sep 14, 2007:
- 4:22 PM Ticket #762 (Provide operators 'In' and 'Not in' when filtering a list) created by
- Expand the list of operators supported by the free-text filter. Add …
- 4:16 PM Ticket #761 (Not equal in filter doesn't support wildcards) created by
- When I try to filter a String column with not equal ( <> ) it does nothing.
- 3:54 PM Changeset [3736] by
- 3:52 PM Changeset [3735] by
- removed some system.out lines…
- 3:51 PM Ticket #760 (Make the Base1PluginExecuter use position batcher again.) closed by
- fixed: (In [3734]) Fixes #760
- 3:51 PM Changeset [3734] by
- Fixes #760
- 2:08 PM Changeset [3733] by
- References #364 The functionallity is more or less done. The internal …
- 2:03 PM Changeset [3732] by
- References #733 The PluginConfigurationImporter? class can be used …
- 11:25 AM Ticket #760 (Make the Base1PluginExecuter use position batcher again.) created by
- 10:59 AM Ticket #731 (Extend mapping in Base1PluginExecuter) closed by
- fixed: (In [3731]) Fixes #731 Added mapping for all hard coded data. …
- 10:59 AM Changeset [3731] by
- Fixes #731 Added mapping for all hard coded data. Corrected some …
- 8:41 AM Ticket #759 (Automatically name Affymetrix array design after the name of the ...) created by
- The file name is actually used to verify that a CEL file matches the …
- 8:28 AM Ticket #758 (Store number of features in a database column of ArrayDesign) created by
- The current implementation doesn't store this information. We must …
Sep 13, 2007:
- 4:32 PM Changeset [3730] by
- Fixes #757
- 4:32 PM Ticket #757 (BASEFile export wrong name for external id) closed by
- fixed: (In [3730]) Fixes #757
- 4:17 PM Ticket #757 (BASEFile export wrong name for external id) created by
- The name for the externl id of a reporter should be reporterId.
- 4:08 PM Changeset [3729] by
- Fixes #739 Removes AnyToAny?
- 4:08 PM Ticket #739 (Base1PluginExecuter ignores leaveStdin/leaveStdout parameters) closed by
- fixed: (In [3729]) Fixes #739 Removes AnyToAny?
- 3:46 PM Ticket #739 (Base1PluginExecuter ignores leaveStdin/leaveStdout parameters) reopened by
- The AnyToAny? link should also be removed.
- 3:42 PM Ticket #756 (BioAssaySetExporter BASEFile) closed by
- fixed: (In [3728]) Fixes #756
- 3:42 PM Changeset [3728] by
- Fixes #756
- 3:34 PM Ticket #756 (BioAssaySetExporter BASEFile) created by
- The ExtraValue? names should be exported with the prefix _xc_
- 3:32 PM Changeset [3727] by
- Fixes #739
- 3:32 PM Ticket #739 (Base1PluginExecuter ignores leaveStdin/leaveStdout parameters) closed by
- fixed: (In [3727]) Fixes #739
- 2:19 PM Changeset [3726] by
- Fixes #755
- 2:19 PM Ticket #755 (Base1PluginExecuter permission) closed by
- fixed: (In [3726]) Fixes #755
- 2:18 PM Ticket #755 (Base1PluginExecuter permission) created by
- The Base1PluginExecuter needs CREATE and USE permisison on ExtraValueType?
- 12:59 AM Changeset [3725] by
- Merged patch release 2.4.1 to the trunk. Delta 2.4.1 - 2.4.
- 12:58 AM ReleaseProcedure edited by
- (diff)
- 12:55 AM Changeset [3724] by
- Merged patch release 2.4.1 to the webservices bracnh. Delta 2.4.1 - 2.4.
- 12:37 AM Milestone BASE 2.4.1 completed
- Revision Log: log:branches/2.4-stable@3693:3722
- 12:37 AM ReleaseProcedure edited by
- (diff)
- 12:35 AM Ticket #744 (Make it possible to resume the migration program in case of a failure) closed by
- fixed
- 12:32 AM DownloadPage edited by
- Releasing 2.4.1 (diff)
- 12:20 AM Changeset [3723] by
- Changes for future release 2.4.2
- 12:06 AM Changeset [3722] by
- Tagging release 2.4.1
Sep 12, 2007:
- 10:25 PM Changeset [3721] by
- Preparing release 2.4.1
- 4:01 PM Changeset [3720] by
- References #733. The PluginConfigurationImporter? can now import a …
- 3:02 PM Changeset [3719] by
- References #411: Most of the basic functionality is now in place and …
- 1:28 PM Changeset [3718] by
- References #753 Added null check in the NameablePluginAdaptor?
- 1:01 PM Changeset [3717] by
- removed some unused code
- 1:00 PM Ticket #754 (Base1PluginExecuter throws NullPointer) closed by
- fixed: (In [3716]) Fixes #754
- 1:00 PM Changeset [3716] by
- Fixes #754
- 11:51 AM Ticket #754 (Base1PluginExecuter throws NullPointer) created by
- The Base1PluginExecuter throws a NullPointer? from the isInContext method.
- 11:29 AM Ticket #753 (NullPointerException in plugin configuration list) created by
- If I try to list plugin configurations (with the definition column) …
Sep 11, 2007:
- 8:57 PM Ticket #750 (Raw bioassays: display plugin configuration used to import data) closed by
- wontfix: This information is not stored so it can't be displayed.
- 4:37 PM Ticket #752 (Configuration parameters not preserved when Plugin configuration copied) created by
- When creating a new Plugin configuration by copying an existing …
- 4:10 PM Ticket #751 (Fail to delete item from table view) created by
- When in table view an item is marked (by check box). Selecting delete …
- 3:52 PM Ticket #750 (Raw bioassays: display plugin configuration used to import data) created by
- For Raw bioassays display the plugin and plugin configuration used to …
- 2:03 PM Ticket #655 (Plugins -> defintions fails with 'illegal attempt to dereference ...) reopened by
- We never fixed the "Add file format" button from the auto-detect file …
- 1:13 PM Changeset [3715] by
- References #746 and #554. Added new new UML file for MagicDraw? 12.5. …
- 12:56 PM Ticket #749 (TAR files with long files names are not supported) created by
- The package for TAR that is used in BASE …
Sep 10, 2007:
- 4:17 PM Changeset [3714] by
- References #364.
- 2:42 PM Ticket #748 (MeV application fail to load data) created by
- When trying to launch MeV (through the BASE 2 demo site) data fails to …
Sep 7, 2007:
- 11:23 AM Changeset [3713] by
- Addresses #744. Added information about migration restart do documentation.
Sep 6, 2007:
- 10:46 PM Ticket #747 (Problem trying to install RMAExpress plugin on Windows) closed by
- invalid: I think I have seen this before... It was a long time ago (before BASE …
- 9:25 PM Ticket #747 (Problem trying to install RMAExpress plugin on Windows) created by
- java.lang.ClassFormatError? on page …
- 2:56 PM Changeset [3712] by
- References #364. Most of the plugin settings can be saved now, but …
- 1:56 PM Ticket #728 (./jobagent.sh start does not work) closed by
- invalid: This is as expected. The script by default only looks in the current …
- 12:26 PM Ticket #746 (Transfer existing (data-layer) UML diagrams to latest MagicDraw) created by
- MagicDraw? now has a free "Community Edition" that is designed for open …
- 9:47 AM Changeset [3711] by
- Fixes #736: Incorrect error message is displayed if a file upload fails
- 9:47 AM Ticket #736 (Incorrect error message is displayed if a file upload fails) closed by
- fixed: (In [3711]) Fixes #736: Incorrect error message is displayed if a file …
- 9:39 AM Changeset [3710] by
- Fixes #745: NullPointerException? in File.getSize() References #628 and …
- 9:39 AM Ticket #745 (NullPointerException in File.getSize()) closed by
- fixed: (In [3710]) Fixes #745: NullPointerException? in File.getSize() …
- 9:32 AM Ticket #745 (NullPointerException in File.getSize()) created by
- I get a NullPointerException? in File.getSize() after a migration with …
- 9:28 AM Changeset [3709] by
- References #744: Make it possible to resume the migration program in …
Sep 5, 2007:
- 5:48 PM Changeset [3708] by
- References #364 Configuring the installation is allmost done.
- 11:42 AM Ticket #744 (Make it possible to resume the migration program in case of a failure) created by
- The migration program can take a very long time to run if there is a …
- 11:33 AM Ticket #743 (Scientific numbers with a + sign in the exponent are not parsed correctly) closed by
- fixed: Fixed in [3703]
- 11:33 AM Ticket #743 (Scientific numbers with a + sign in the exponent are not parsed correctly) created by
- we have noted that none of the value in the data file such as …
- 11:29 AM Changeset [3707] by
- Fixes #740: Missing AnyToAny? item causes ItemNotFoundException? when …
- 11:29 AM Ticket #740 (Missing AnyToAny item causes ItemNotFoundException when viewing a ...) closed by
- fixed: (In [3707]) Fixes #740: Missing AnyToAny? item causes …
- 9:33 AM Ticket #742 (Refactor BioAssaySetExporter) created by
- There has been requests on the mailing list to be able to subclass the …
- 9:32 AM Ticket #741 (Refactor Base1PluginExecuter) created by
- There has been requests on the mailing list to be able to subclass the …
- 9:15 AM Ticket #740 (Missing AnyToAny item causes ItemNotFoundException when viewing a ...) created by
- A transformation may have AnyToAny? links to other items (files). Due …
- 9:03 AM Ticket #739 (Base1PluginExecuter ignores leaveStdin/leaveStdout parameters) created by
- The stdin.txt is always deleted and the stdout.txt is always kept. The …
Sep 3, 2007:
- 8:34 AM Ticket #738 (Implement file upload as a pure servlet) created by
- The JSP:s used for file upload are sensitive to line breaks in the JSP …
Aug 30, 2007:
- 11:07 PM Ticket #737 (Script that fixes copyright text may also add extra new line to end of ...) created by
- I am not sure if the extra new line at the end of …
- 10:58 PM Ticket #736 (Incorrect error message is displayed if a file upload fails) created by
- The JSP page that should take care of the error and display it has a …
- 3:59 PM Changeset [3706] by
- References #364 Started updating the GUI to support auto installation …
Aug 29, 2007:
Aug 28, 2007:
- 4:42 PM Changeset [3704] by
- References #364 Moved the PluginInfo? class to another package, added a …
- 4:20 PM Ticket #735 (PermissionDeniedException on array design list view) created by
- As a normal user, another blank list view with the following in …
- 3:37 PM Ticket #734 (Un-caught NullPointerException in plugin configurations list view.) created by
- As an admin user I can create and view plugin configurations fine. As …
Aug 27, 2007:
- 12:53 PM Ticket #733 (Add support to select plugin configurations that should be imported) created by
- The plugin-configuration-importer plugin should offer a possibility …
- 10:03 AM Changeset [3703] by
- Fixes the problem with '+' before the exponent (when its 0). The '+' …
Aug 24, 2007:
- 3:37 PM Changeset [3702] by
- Addresses #732. Fixing broken basehacks link.
- 3:36 PM Changeset [3701] by
- Addresses #732. Fixing broken basehacks link.
- 1:53 PM Ticket #732 (Link to basehacks has disappeard) created by
- We need to keep a link to http://trac.thep.lu.se/trac/basehacks …
- 10:44 AM Ticket #731 (Extend mapping in Base1PluginExecuter) created by
- The mapping in the executer should be extended. For instance …
Aug 23, 2007:
- 1:42 PM Changeset [3700] by
- References #364 The main functions in core is now done for this. A …
Aug 22, 2007:
- 12:42 PM Changeset [3699] by
- URL to demo server change
- 11:11 AM WikiStart edited by
- URL to demo server change (diff)
Aug 21, 2007:
- 4:17 PM Changeset [3698] by
- References #364 Automatic install non-core plugins. First check-in, …
- 3:59 PM Changeset [3697] by
- Removed 'reference reference' repeat.
- 3:14 PM Ticket #730 (Documentation figures should be centered by default) created by
- It would also be nice to be able to have figures with text next to it …
- 2:08 PM Changeset [3696] by
- Removing obsolete branch. Superseeded by …
- 11:58 AM Changeset [3695] by
- Merged log:trunk#3650:3691 into the webservices branch.
Aug 20, 2007:
- 4:14 PM WikiStart edited by
- Added feature list. (diff)
- 4:02 PM Milestone BASE 2.4 completed
- The aim is to fix various outstanding issues. Major features such as …
- 4:02 PM Ticket #729 (./jobagent.sh should accept command `status`) created by
- status should return if the agent is running or not. Needed for …
- 3:59 PM Ticket #728 (./jobagent.sh start does not work) created by
- The response is: […] Issuing `./jobagent.sh -c …
- 3:55 PM Ticket #659 (Add wiki page describing BASE features) closed by
- fixed: First version added as http://base.thep.lu.se/wiki/Features
- 3:32 PM Features edited by
- More features. (diff)
- 3:28 PM Features created by
- First list of features.
- 3:22 PM ReleaseProcedure edited by
- More fixes to the release procedures. (diff)
- 2:58 PM ReleaseProcedure edited by
- Added link to announcement mail (diff)
- 2:51 PM DownloadPage edited by
- (diff)
- 2:49 PM ReleaseProcedure edited by
- (diff)
- 2:49 PM DownloadPage edited by
- Releasing 2.4 (diff)
- 2:22 PM Changeset [3694] by
- Changes for future release 2.4.1
- 2:18 PM ReleaseProcedure edited by
- (diff)
- 2:04 PM Changeset [3693] by
- Tagging version 2.4
- 1:56 PM Changeset [3692] by
- Preparing release 2.4
- 1:50 PM Changeset [3691] by
- Changes for future release 2.5
- 1:49 PM Changeset [3690] by
- Forking new minor version 2.4 branch.
- 1:42 PM ReleaseProcedure edited by
- Improving procedure. (diff)
- 12:04 PM Changeset [3689] by
- Fixes #615.
- 12:04 PM Ticket #615 (Write 'Installing job agents' section) closed by
- fixed: (In [3689]) Fixes #615.
- 12:03 PM Changeset [3688] by
- Updated link to release procedures.
- 12:02 PM Changeset [3687] by
- Removed links to deleted files.
- 9:34 AM Changeset [3686] by
- Refs #615 and fixed spelling.
- 9:33 AM Changeset [3685] by
- Removed obsolete files.
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