Timeline
Oct 22, 2007:
- 2:27 PM Ticket #591 (Add option to stop a plug-in from beeing executed by the internal job queue) closed by
- fixed
- 2:21 PM Changeset [3871] by
- Fixes #595: Add option to stop a plug-in from beeing executed by the …
Oct 20, 2007:
- 3:30 AM WikiStart edited by
- typo (diff)
Oct 19, 2007:
- 4:25 PM Changeset [3870] by
- Added section about class loading issues in plug-in developer section.
- 3:01 PM Changeset [3869] by
- References #807 Added documentation for plug-in developers.
- 2:59 PM Ticket #807 (Read documentation related to ticket #721: Store data in files instead ...) created by
- This affects several sections: * User documentation about platforms: …
- 1:10 PM Changeset [3868] by
- References #360: Make subsections on view pages hideable * Added …
- 11:49 AM Changeset [3867] by
- References #721: Store data in files instead of in the database * …
- 9:28 AM Changeset [3866] by
- References #364: Support for automatic install of non-core plugins …
- 9:20 AM Changeset [3865] by
- References #721: Create doc/html/userdoc/platforms directory to make …
- 8:06 AM Changeset [3864] by
- References #805: Add syntax coloring to code examples in docbook Fix …
Oct 18, 2007:
- 5:18 PM Changeset [3863] by
- Fixing link to baseplugins web site.
- 5:18 PM Changeset [3862] by
- Fixing link to baseplugins web site.
- 4:33 PM Changeset [3861] by
- References #492 Added Services for RawBioAssay? and ArrayDesign?. Each …
- 2:59 PM Changeset [3860] by
- References #721: Started to update the docbook documentation with …
- 12:03 PM Changeset [3859] by
- References #789: Extend "Experiment overview" to check for problems …
- 9:40 AM WikiStart edited by
- Changed link to BASE plug-ins web site (diff)
Oct 17, 2007:
- 7:15 PM Changeset [3858] by
- References #794: Additional fix needed in trunk due to API changes in …
- 1:39 PM Ticket #806 (Experimental factor values display on Experiment page can only display ...) created by
- Problem was posted on the mailing list: >> >> We are trying to …
- 12:41 PM Changeset [3857] by
- Merged patch release 2.4.4 to the trunk. Delta 2.4.4 - 2.4.3
- 11:58 AM DownloadPage edited by
- Releasing 2.4.4 (diff)
- 11:30 AM Changeset [3856] by
- Changes for future release 2.4.5
- 11:27 AM Changeset [3855] by
- Tagging version 2.4.4
- 11:27 AM Milestone BASE 2.4.4 completed
- Revision Log: log:branches/2.4-stable@3788:3854
- 11:20 AM Changeset [3854] by
- Preparing release 2.4.4
- 11:18 AM Ticket #796 (Don't create indexes on primary key columns for tables in the dynamic ...) closed by
- fixed: The tests shows that the fixes improve performance, i.e., creation of …
- 11:14 AM Ticket #751 (Fail to delete item from table view) closed by
- invalid: Seems to have been caused by Tomcat being overloaded.
- 11:09 AM Ticket #737 (Script that fixes copyright text may also add extra new line to end of ...) closed by
- invalid: This was an issue here for the affected files, but the problem belongs …
- 11:04 AM Ticket #748 (MeV application fail to load data) closed by
- worksforme
- 10:25 AM Changeset [3853] by
- Fixes #768.
- 10:25 AM Ticket #768 (Add information about running reporter update after migration if needed) closed by
- fixed: (In [3853]) Fixes #768.
- 9:58 AM Changeset [3852] by
- References #721: Auto-detect function is now aware of FileStoreEnabled? …
- 8:56 AM Changeset [3851] by
- References #721: Filter on file extension when selecting platform data …
- 8:45 AM Changeset [3850] by
- References #788: Select project default platforms / variant The …
- 8:29 AM Changeset [3849] by
- References #492 Updating license information and 3rd party components
- 8:17 AM Changeset [3848] by
- References #721: Can now edit raw bioassays, array designs and …
- 7:52 AM Ticket #788 (Select project default platforms / variant) closed by
- fixed: (In [3847]) Fixes #788: Select project default platforms / variant
- 7:52 AM Changeset [3847] by
- Fixes #788: Select project default platforms / variant
Oct 16, 2007:
- 10:23 PM Ticket #804 (Add links to example code in the Plugins section of the documentation) closed by
- worksforme: It is section 23.7: …
- 4:52 PM Changeset [3846] by
- References #492 Copying webservices into trunk
- 3:18 PM Changeset [3845] by
- References #492 Copying webservices into trunk
- 3:12 PM Changeset [3844] by
- References #492 Copying webservices into trunk
- 2:51 PM Changeset [3843] by
- References #492 Copying webservices into trunk
- 2:50 PM Changeset [3842] by
- References #492 Copying webservices into trunk
- 2:44 PM Changeset [3841] by
- References #492 Copying webservices into trunk
- 1:50 PM Changeset [3840] by
- Fixes #667.
- 1:50 PM Ticket #667 (Move ch. 7 to a lower level) closed by
- fixed: (In [3840]) Fixes #667.
- 1:41 PM Changeset [3839] by
- References #492 Updated javadoc
- 1:38 PM Changeset [3838] by
- Fixes #805: Add syntax coloring to code examples in docbook
- 1:38 PM Ticket #805 (Add syntax coloring to code examples in docbook) closed by
- fixed: (In [3838]) Fixes #805: Add syntax coloring to code examples in docbook
- 1:38 PM Ticket #805 (Add syntax coloring to code examples in docbook) created by
- 10:43 AM Ticket #804 (Add links to example code in the Plugins section of the documentation) created by
- It may already exist but this needs t be checked.
- 10:40 AM Ticket #730 (Documentation figures should be centered by default) closed by
- worksforme
Oct 15, 2007:
- 7:43 PM Changeset [3837] by
- No longer implement the FilenameFilter? interface since it couldn't be …
- 2:58 PM Changeset [3836] by
- References #492 A BioAssaySet? can now be downloaded in MeV-format …
- 2:26 PM Changeset [3835] by
- References #721. Updated documentation.
- 1:55 PM Changeset [3834] by
- Export methods that take an OutputStream? as a parameter are now public …
- 9:36 AM Changeset [3833] by
- Updated "Development ideas" with information about already implemented …
- 9:25 AM Changeset [3832] by
- References #364. * Test program now looks for the test plug-ins: …
- 8:27 AM Changeset [3831] by
- References #492 Updated copyright statement
Oct 13, 2007:
- 12:48 AM Changeset [3830] by
- Adding files that was not merged from trunk previously.
Oct 12, 2007:
- 11:08 PM Changeset [3829] by
- Fixing copyright statement.
- 11:07 PM Changeset [3828] by
- Fixing svn properties and eol characters.
- 9:04 PM Changeset [3827] by
- Merged log:trunk#3795:3824 into webservices branch.
- 4:09 PM Changeset [3826] by
- References #492 Extended the services for bioassaysets. A download …
- 3:06 PM Changeset [3825] by
- Fixes #803: Experiment overview is broken if protocols with …
- 3:06 PM Ticket #803 (Experiment overview is broken if protocols with non-predefined ...) closed by
- fixed: (In [3825]) Fixes #803: Experiment overview is broken if protocols …
- 2:57 PM Ticket #803 (Experiment overview is broken if protocols with non-predefined ...) created by
- A predefined protocol type is a protocol type which has a system ID. …
- 2:47 PM Changeset [3824] by
- Fixes #802: Migration should attach data files to array design and raw …
- 2:47 PM Ticket #802 (Migration should attach data files to array design and raw bioassays) closed by
- fixed: (In [3824]) Fixes #802: Migration should attach data files to array …
- 1:46 PM Changeset [3823] by
- Fixed spelling on the word 'everything'.
- 12:27 PM Changeset [3822] by
- Fixes #801: Code for the "Recently viewed items" menu is unstable when …
- 12:27 PM Ticket #801 (Code for the "Recently viewed items" menu is unstable when data is in ...) closed by
- fixed: (In [3822]) Fixes #801: Code for the "Recently viewed items" menu is …
- 12:10 PM Ticket #802 (Migration should attach data files to array design and raw bioassays) created by
- Depends on #721. This information has not been possible to transfer to …
- 12:04 PM Changeset [3821] by
- Delete filedb branch since it has now been merged into the trunk
- 12:03 PM Changeset [3820] by
- Merged branches/filedb into trunk.
- 11:30 AM Changeset [3819] by
- Merged log:trunk#3795:3815 into filedb branch
- 11:14 AM Changeset [3818] by
- References #721: Store data in files instead of in the database * …
Oct 11, 2007:
- 7:32 PM Ticket #801 (Code for the "Recently viewed items" menu is unstable when data is in ...) created by
- I have the following setup: […] Without changing anything, today …
- 3:38 PM Changeset [3817] by
- References #721: Store data in files instead of in the database * …
Oct 10, 2007:
- 5:32 PM Ticket #800 (Make the Illumina importer accept tab as data delimiter and comma as ...) created by
- My Illumina files are not comma separted but tab separeted. Can you …
- 4:48 PM Changeset [3816] by
- References #492 Start working on services for BioAssaySets? and added a …
- 2:58 PM Changeset [3815] by
- Fixes #799. The same bug was found when BASE tries to look in the …
- 2:58 PM Ticket #799 (External plugin installer fails when jars don't have base-plugin.xml) closed by
- fixed: (In [3815]) Fixes #799. The same bug was found when BASE tries to look …
- 2:57 PM Changeset [3814] by
- References #721: Store data in files instead of in the database * …
- 2:30 PM Ticket #799 (External plugin installer fails when jars don't have base-plugin.xml) created by
- 1:44 PM Changeset [3813] by
- References #492 -Made it possible to send restrictions and …
- 11:46 AM Changeset [3812] by
- References #721: Store data in files instead of in the database * …
Oct 9, 2007:
- 7:13 PM Ticket #798 (Stopping job agent should stop jobs gracefully and set status killed ...) closed by
- duplicate: Duplicate of #636.
- 4:21 PM Ticket #798 (Stopping job agent should stop jobs gracefully and set status killed ...) created by
- 2:15 PM Changeset [3811] by
- References #796: Don't create indexes on primary key columns for …
- 12:06 PM Changeset [3810] by
- References #796: Don't create indexes on primary key columns for …
- 9:47 AM Ticket #797 (Enhance performance for LOWESS and Medin-ratio plug-ins) created by
- The performance tests (#294) shows that the LOWESS plug-in has bad …
- 9:38 AM Ticket #796 (Don't create indexes on primary key columns for tables in the dynamic ...) created by
- The performance testing (#294) discovered that a lot of indexes are …
Oct 8, 2007:
- 12:17 PM Changeset [3809] by
- Fixes #793: Job agent get logged out when waiting for a job to finish …
- 12:17 PM Ticket #793 (Job agent get logged out when waiting for a job to finish) closed by
- fixed: (In [3809]) Fixes #793: Job agent get logged out when waiting for a …
- 11:25 AM Ticket #794 (Long query may cause session to timeout) closed by
- fixed: (In [3808]) Fixes #794: Long query may cause session to timeout
- 11:25 AM Changeset [3808] by
- Fixes #794: Long query may cause session to timeout
- 7:49 AM Ticket #795 (Base1PluginExecuter throw PermissionDeniedException: Data cube has ...) created by
- I'm running base-2.4.2 on tomcat 6.0.14. I'm running a base1 plugin. …
- 3:50 AM ReleaseProcedure edited by
- fixed typo (diff)
Oct 5, 2007:
- 3:36 PM Changeset [3807] by
- References #721: Most things for attaching files to rw bioassays are …
- 1:12 PM Changeset [3806] by
- Fixed typo.
Oct 4, 2007:
- 4:33 PM Changeset [3805] by
- References #492 Added a basic support for includes in queries and …
- 2:25 PM Changeset [3804] by
- References #721: Most things for attaching files to array designs are …
Oct 3, 2007:
- 4:33 PM Changeset [3803] by
- References #492 Updated Axis2 from 1.1 to 1.3
- 1:58 PM Changeset [3802] by
- References #721: File validation is now in place. More robust code for …
- 8:46 AM Ticket #794 (Long query may cause session to timeout) created by
- If a client application executes a query that takes a long time …
Oct 2, 2007:
- 9:12 AM Changeset [3801] by
- References #721: It is now possible to select files for an array design
Oct 1, 2007:
- 8:02 AM Ticket #793 (Job agent get logged out when waiting for a job to finish) created by
- If a job takes longer time to execute than the setting in …
Sep 28, 2007:
- 8:11 PM Ticket #792 (Add support for units to annotation values) created by
- See …
- 3:16 PM Ticket #791 (Plug-in execution time estimates) created by
- Plug-ins should be better in estimating the expected execution time. …
- 3:14 PM Ticket #790 (Job slot status information on job agent view) created by
- It would be nice to see the jobs slot utilization in the job agent …
- 1:58 PM Ticket #789 (Extend "Experiment overview" to check for problems related to platform ...) created by
- Depends on #721 and #788. The experiment overview should check: * …
- 1:54 PM Ticket #788 (Select project default platforms / variant) created by
- Depends on #721. The list of items selected as project default items …
- 1:47 PM Changeset [3800] by
- References #721: It is now possible to edit platforms and data file …
- 9:50 AM Changeset [3799] by
- References #721: Added platform variants to web gui.
- 8:45 AM Changeset [3798] by
- References #721: Changed systemId to externalId in JSP as well
- 8:35 AM Changeset [3797] by
- References #721: Changes systemId to externalId
Sep 27, 2007:
- 10:05 PM Changeset [3796] by
- Merged log:trunk#3775:3995 into filedb branch
- 9:52 PM Changeset [3795] by
- References #721: Updated documentation to reflect changes in the code …
- 9:47 PM Changeset [3794] by
- References #524. Fixed some issues in the text, and a build problem on …
- 1:38 PM Changeset [3793] by
- References #721: Many core classes in place. Work has started on the …
- 12:57 PM Ticket #787 (Add functions for within Bioassays and across Bioassayset in expressions) created by
- It would be useful to have the possibility to use some standard …
- 9:58 AM Ticket #560 (Deleting reporters) closed by
- fixed: (In [3792]) Fixes #560 Deleting reporters
- 9:58 AM Changeset [3792] by
- Fixes #560 Deleting reporters
Sep 26, 2007:
- 1:33 PM Ticket #665 (Links in the documentation) closed by
- fixed: (In [3791]) Fixes #665 Links in the documentation
- 1:33 PM Changeset [3791] by
- Fixes #665 Links in the documentation
- 11:24 AM Changeset [3790] by
- References #524 Some small changes to finish the writing.
- 10:54 AM Changeset [3789] by
- Merged the 2.4.3 release log:branches/2.4-stable#3771:3788
- 12:14 AM DownloadPage edited by
- Releasing 2.4.3 (diff)
- 12:04 AM Changeset [3788] by
- Changes for future release 2.4.4
- 12:02 AM Changeset [3787] by
- Tagging release 2.4.3
- 12:02 AM Milestone BASE 2.4.3 completed
- Revision Log: log:branches/2.4-stable@3772:3786
Sep 25, 2007:
- 11:56 PM Changeset [3786] by
- Preparing release 2.4.3
- 4:56 PM Changeset [3785] by
- creates the new BioAssay? set the same way in the assays and spots section
- 3:08 PM Ticket #655 (Plugins -> defintions fails with 'illegal attempt to dereference ...) closed by
- fixed: (In [3784]) Fixes #655: Plugins -> defintions fails with 'illegal …
- 3:08 PM Changeset [3784] by
- Fixes #655: Plugins -> defintions fails with 'illegal attempt to …
- 2:30 PM Changeset [3783] by
- Merged changes from trunk between revisions 3758:3775 Minor changes in …
- 2:28 PM Changeset [3782] by
- References #524 Mostly done, will read it one more time and correct …
- 1:47 PM Changeset [3781] by
- Fixes #780: ParameterValuesImpl? doesn't implement ParameterValues? as …
- 1:47 PM Ticket #780 (ParameterValuesImpl doesn't implement ParameterValues as specified) closed by
- fixed: (In [3781]) Fixes #780: ParameterValuesImpl? doesn't implement …
- 1:20 PM Changeset [3780] by
- Fixes #784: PackedFileExporter? chews first character from file and …
- 1:20 PM Ticket #784 (PackedFileExporter chews first character from file and directory names ...) closed by
- fixed: (In [3780]) Fixes #784: PackedFileExporter? chews first character from …
- 12:17 PM Changeset [3779] by
- Fixes #776: ParameterType?.validate should include parameter name in …
- 12:17 PM Ticket #776 (ParameterType.validate should include parameter name in error messages) closed by
- fixed: (In [3779]) Fixes #776: ParameterType?.validate should include …
- 12:11 PM Ticket #786 (Path constructor doesn't validate the filename part of the path) closed by
- fixed: (In [3778]) Fixes #786: Path constructor doesn't validate the filename …
- 12:11 PM Changeset [3778] by
- Fixes #786: Path constructor doesn't validate the filename part of the path
- 12:03 PM Ticket #786 (Path constructor doesn't validate the filename part of the path) created by
- It happily accepts a path like: /dir/abc<>def Creating a File item …
- 11:35 AM Ticket #785 (ItemContext.configureQuery() should use fetch join if a non-selected ...) closed by
- fixed: (In [3777]) Fixes #785: ItemContext?.configureQuery() should use fetch …
- 11:35 AM Changeset [3777] by
- Fixes #785: ItemContext?.configureQuery() should use fetch join if a …
- 11:33 AM Ticket #783 (Check the source for other places affected by the Postgres problem ...) closed by
- fixed: Can't find any more places. The problem found is now part of ticket #785.
- 11:32 AM Ticket #785 (ItemContext.configureQuery() should use fetch join if a non-selected ...) created by
- Some databases, ie. Postgres, requires that a column in the ORDER BY …
- 11:28 AM Changeset [3776] by
- Fixes #781: AnnotationSet?.getAllInheritedAnnotations() may generate …
- 11:28 AM Ticket #781 (AnnotationSet.getAllInheritedAnnotations() may generate invalid query ...) closed by
- fixed: (In [3776]) Fixes #781: AnnotationSet?.getAllInheritedAnnotations() may …
- 11:12 AM Changeset [3775] by
- Merged the 2.4.2 release log:branches/2.4-stable#3694:3770
- 9:35 AM Ticket #782 (Create test case that calls AnnotationSet.getAllInheritedAnnotations()) closed by
- fixed: (In [3774]) Fixes #782: Create test case that calls …
- 9:35 AM Changeset [3774] by
- Fixes #782: Create test case that calls …
- 1:02 AM WikiStart edited by
- Fixed broken link. (diff)
- 12:13 AM Changeset [3773] by
- Merged patch release 2.4.2 to the webservices bracnh. Delta 2.4.2 - 2.4.1
Sep 24, 2007:
- 11:09 PM DownloadPage edited by
- Releasing 2.4.2 (diff)
- 11:01 PM Changeset [3772] by
- Changes for future release 2.4.3
- 10:51 PM Changeset [3771] by
- Tagging release 2.4.2
- 10:51 PM Milestone BASE 2.4.2 completed
- Revision Log: log:branches/2.4-stable@3723:3770
- 10:45 PM Changeset [3770] by
- Preparing release 2.4.2
- 10:42 PM Ticket #784 (PackedFileExporter chews first character from file and directory names ...) created by
- If trying to download files and directories that are located in the …
- 10:33 PM Ticket #783 (Check the source for other places affected by the Postgres problem ...) created by
- Since it only affects distinct queries we can use Eclipse to find all …
- 10:31 PM Ticket #782 (Create test case that calls AnnotationSet.getAllInheritedAnnotations()) created by
- See #781 for details about why such a test is needed.
- 10:26 PM Ticket #781 (AnnotationSet.getAllInheritedAnnotations() may generate invalid query ...) created by
-
On the
/common/annotations/list_annotations.jspthe … - 6:30 PM Ticket #780 (ParameterValuesImpl doesn't implement ParameterValues as specified) created by
- The ParameterValuesImpl?.setValue() and setValues() method doesn't …
- 5:20 PM Ticket #779 (Improve validation of job parameters in Base1PluginExecuter) created by
- The job parameters in the Base1PluginExecuter should be validated at …
- 4:53 PM Ticket #777 (Take me back to the start) closed by
- invalid: It is the responsibility of the plug-in to validate the parameters and …
- 4:49 PM Ticket #778 (Add expression to formula) created by
- When creating an expression to a formula using the the Expression …
- 4:34 PM Ticket #777 (Take me back to the start) created by
- If I have made en error when adding values to the plugin job …
- 4:25 PM Ticket #776 (ParameterType.validate should include parameter name in error messages) created by
- The exception message shown when you have entered wrong values in the …
- 3:58 PM Changeset [3769] by
- Fixes #770 Filter plug-in is lacking permission to read reporter lists
- 3:58 PM Ticket #770 (Filter plug-in is lacking permission to read reporter lists) closed by
- fixed: (In [3769]) Fixes #770 Filter plug-in is lacking permission to read …
- 3:11 PM Ticket #775 (Refresh redirects) created by
- From the experiment analyse page. I press 'Overview plots' and watch …
- 2:39 PM Ticket #774 (Export selected items doesn't work in TableExporter) closed by
- fixed: (In [3768]) Fixes #774 Export selected items doesn't work in TableExporter?
- 2:39 PM Changeset [3768] by
- Fixes #774 Export selected items doesn't work in TableExporter?
- 2:39 PM Ticket #774 (Export selected items doesn't work in TableExporter) created by
- The export of selected items from a table only gives a nullpointer …
- 1:31 PM Ticket #772 (Exporting features from Array designs) closed by
- fixed: (In [3767]) Fixes #772 Exporting features from Array designs
- 1:31 PM Changeset [3767] by
- Fixes #772 Exporting features from Array designs
Note: See TracTimeline
for information about the timeline view.
