Timeline
Nov 6, 2007:
- 4:49 PM Changeset [3919] by
- References #492 Modified the download methods to eliminate the …
- 2:54 PM Changeset [3918] by
- References #746: Transfer existing UML diagrams to latest MagicDraw? …
- 2:43 PM Changeset [3917] by
- Fixes #717: Make initdb, updatedb and other scripts accept a username
- 2:43 PM Ticket #717 (Make initdb, updatedb and other scripts accept a username) closed by
- fixed: (In [3917]) Fixes #717: Make initdb, updatedb and other scripts accept …
- 1:03 PM Changeset [3916] by
- References #746: Transfer existing UML diagrams to latest MagicDraw? …
- 11:56 AM Changeset [3915] by
- Fixes #795
- 11:56 AM Ticket #795 (Base1PluginExecuter throw PermissionDeniedException: Data cube has ...) closed by
- fixed: (In [3915]) Fixes #795
- 10:51 AM Changeset [3914] by
- References #809 Documentation updated
- 10:42 AM Changeset [3913] by
- Fixes #778: Add expression to formula
- 10:42 AM Ticket #778 (Add expression to formula) closed by
- fixed: (In [3913]) Fixes #778: Add expression to formula
- 9:44 AM Changeset [3912] by
- References #721. Fixes NPE in autodetect file format function when …
- 9:42 AM Changeset [3911] by
- Fixes #811: Wildcard or regular expressions in raw data column …
- 9:42 AM Ticket #811 (Wildcard or regular expressions in raw data column mappings) closed by
- fixed: (In [3911]) Fixes #811: Wildcard or regular expressions in raw data …
- 8:59 AM Changeset [3910] by
- Fixes #814 and #815: Upgrade Postgres JDBC and Hibernate
- 8:59 AM Tickets #814,815 batch updated by
- fixed: (In [3910]) Fixes #814 and #815: Upgrade Postgres JDBC and Hibernate
- 8:57 AM Changeset [3909] by
- References #721: Store data in files instead of in the database …
- 7:51 AM Ticket #815 (Updgrade to Hibernate 3.2.5) created by
- It has been around since July so it should be stable. It fixes a …
- 7:48 AM Ticket #814 (Update Postgres JDBC driver to latest) created by
- There is a new version for Java 6 on the Postgres homepage. I have not …
Nov 5, 2007:
- 7:46 PM Changeset [3908] by
- References #809 Updated javadoc
- 2:58 PM Changeset [3907] by
- References #809. Smaller adjustments.
- 2:24 PM Changeset [3906] by
- Fixes #813: Postgres db-engine ignores schema information in …
- 2:24 PM Ticket #813 (Postgres db-engine ignores schema information in getDropIndexSql() method) closed by
- fixed: (In [3906]) Fixes #813: Postgres db-engine ignores schema information …
- 12:45 PM Ticket #813 (Postgres db-engine ignores schema information in getDropIndexSql() method) created by
- This causes problem when applying the performance fix in 2.4.4 (#796) …
- 11:13 AM Ticket #812 (Wildcard or regular expressions in raw data column mappings) closed by
- duplicate
- 11:06 AM Ticket #812 (Wildcard or regular expressions in raw data column mappings) created by
- Allow wildcard or regular expressions in column mappings when …
- 11:05 AM Ticket #811 (Wildcard or regular expressions in raw data column mappings) created by
- Allow wildcard or regular expressions in column mappings when …
- 10:59 AM Ticket #810 (Implement query options for Include.ANNOTATED and Include.NOT_ANNOTATED) closed by
- fixed: (In [3905]) Fixes #810: Implement query options for Include.ANNOTATED …
- 10:59 AM Changeset [3905] by
- Fixes #810: Implement query options for Include.ANNOTATED and …
Nov 2, 2007:
- 12:01 PM Changeset [3904] by
- References #746:Transfer existing UML diagrams to latest MagicDraw? …
Nov 1, 2007:
- 2:50 PM WikiStart edited by
- Clarified GPL license version. (diff)
- 2:46 PM Changeset [3903] by
- Recommend Postgres users to use at least 8.2
- 1:09 PM Changeset [3902] by
- Added svndigest:ignore to testdata directory
- 11:33 AM Changeset [3901] by
- References #746: Transfer existing UML diagrams to latest MagicDraw? …
- 11:33 AM Changeset [3900] by
- Fixes #612: Add checks in the core so that unsaved objects are not …
- 11:33 AM Ticket #612 (Add checks in the core so that unsaved objects are not used in queries.) closed by
- fixed: (In [3900]) Fixes #612: Add checks in the core so that unsaved objects …
- 11:17 AM Changeset [3899] by
- References #721: Store data in files instead of in the database …
- 9:20 AM WikiStart edited by
- Clarified GPL license version. (diff)
- 8:15 AM Changeset [3898] by
- References #806: Experimental factor values display on Experiment page …
Oct 31, 2007:
- 3:59 PM Changeset [3897] by
- References #809 Described available services and describe how to …
- 2:12 PM Changeset [3896] by
- References #746: Transfer existing UML diagrams to latest MagicDraw? …
- 1:34 PM DownloadPage edited by
- Releasing 2.4.5 (diff)
- 1:01 PM Changeset [3895] by
- Changes for future release 2.4.6
- 12:52 PM Changeset [3894] by
- Tagging version 2.4.5
- 12:52 PM Milestone BASE 2.4.5 completed
- Revision Log: log:branches/2.4-stable@3856:3893
- 12:51 PM Changeset [3893] by
- Preparing release 2.4.5
Oct 30, 2007:
- 2:33 PM Ticket #524 (Read "Overview of user documentation" section) closed by
- fixed: (In [3892]) Fixes #524: Read "Overview of user documentation" section
- 2:33 PM Changeset [3892] by
- Fixes #524: Read "Overview of user documentation" section
- 1:58 PM Changeset [3891] by
- References #746: Transfer existing UML diagrams to latest MagicDraw? …
- 10:49 AM Changeset [3890] by
- Fixes #707: Can't unlink items that have been put in the trashcan
- 10:49 AM Ticket #707 (Can't unlink items that have been put in the trashcan) closed by
- fixed: (In [3890]) Fixes #707: Can't unlink items that have been put in the …
Oct 29, 2007:
- 2:08 PM Ticket #810 (Implement query options for Include.ANNOTATED and Include.NOT_ANNOTATED) created by
- The core already defines the two query options, …
- 2:03 PM Changeset [3889] by
- References #411: Extending compressed file support and storage …
- 2:00 PM Changeset [3888] by
- References #707: Can't unlink items that have been put in the trashcan …
- 9:45 AM Changeset [3887] by
- References #797: Enhance performance for LOWESS and Median-ratio …
- 8:36 AM Changeset [3886] by
- Replaced old jar-file and updated classpaths
Oct 27, 2007:
- 4:37 PM Changeset [3885] by
- References #809
Oct 26, 2007:
- 4:20 PM Changeset [3884] by
- References #809 Documentation of base web services has begun. …
- 1:40 PM Ticket #809 (Read Web services documentation) created by
- Read documentation about BASE web services …
- 1:29 PM Changeset [3883] by
- Fixes #808: Remove Thread.sleep() from HibernateUtil?.loadIterator
- 1:29 PM Ticket #808 (Remove Thread.sleep() from HibernateUtil.loadIterator) closed by
- fixed: (In [3883]) Fixes #808: Remove Thread.sleep() from …
- 1:21 PM Changeset [3882] by
- References #808: Remove Thread.sleep() from HibernateUtil?.loadIterator …
- 1:19 PM Ticket #808 (Remove Thread.sleep() from HibernateUtil.loadIterator) created by
- http://base.thep.lu.se/browser/tags/2.4.4/src/core/net/sf/basedb/core/H …
- 12:41 PM Changeset [3881] by
- References #492 WSDL files are now generated when running ant-target …
- 11:08 AM Changeset [3880] by
- Added column to Jobs list that displays running time (in minutes and …
- 11:01 AM Ticket #797 (Enhance performance for LOWESS and Medin-ratio plug-ins) closed by
- fixed: (In [3879]) Fixes #797: Enhance performance for LOWESS and Medin-ratio …
- 11:01 AM Changeset [3879] by
- Fixes #797: Enhance performance for LOWESS and Medin-ratio plug-ins
Oct 25, 2007:
- 11:57 AM Changeset [3878] by
- References #797: Enhance performance for LOWESS and Median-ratio …
- 9:57 AM Changeset [3877] by
- References #797: Enhance performance for LOWESS and Medin-ratio …
Oct 24, 2007:
- 4:58 PM Changeset [3876] by
- References #492 Tests for webservices completed. Fixed the bugs that …
- 12:53 PM Ticket #806 (Experimental factor values display on Experiment page can only display ...) closed by
- fixed: (In [3875]) Fixes #806: Experimental factor values display on …
- 12:53 PM Changeset [3875] by
- Fixes #806: Experimental factor values display on Experiment page can …
Oct 23, 2007:
- 4:48 PM Changeset [3874] by
- References #492 Creating tests for webservices
- 2:15 PM Changeset [3873] by
- References #721, fixes #789: Extended test program to include more …
- 2:15 PM Ticket #789 (Extend "Experiment overview" to check for problems related to platform ...) closed by
- fixed: (In [3873]) References #721, fixes #789: Extended test program to …
- 9:54 AM Changeset [3872] by
- References #807: Doc is now read for reading
Oct 22, 2007:
- 2:27 PM Ticket #591 (Add option to stop a plug-in from beeing executed by the internal job queue) closed by
- fixed
- 2:21 PM Changeset [3871] by
- Fixes #595: Add option to stop a plug-in from beeing executed by the …
Oct 20, 2007:
- 3:30 AM WikiStart edited by
- typo (diff)
Oct 19, 2007:
- 4:25 PM Changeset [3870] by
- Added section about class loading issues in plug-in developer section.
- 3:01 PM Changeset [3869] by
- References #807 Added documentation for plug-in developers.
- 2:59 PM Ticket #807 (Read documentation related to ticket #721: Store data in files instead ...) created by
- This affects several sections: * User documentation about platforms: …
- 1:10 PM Changeset [3868] by
- References #360: Make subsections on view pages hideable * Added …
- 11:49 AM Changeset [3867] by
- References #721: Store data in files instead of in the database * …
- 9:28 AM Changeset [3866] by
- References #364: Support for automatic install of non-core plugins …
- 9:20 AM Changeset [3865] by
- References #721: Create doc/html/userdoc/platforms directory to make …
- 8:06 AM Changeset [3864] by
- References #805: Add syntax coloring to code examples in docbook Fix …
Oct 18, 2007:
- 5:18 PM Changeset [3863] by
- Fixing link to baseplugins web site.
- 5:18 PM Changeset [3862] by
- Fixing link to baseplugins web site.
- 4:33 PM Changeset [3861] by
- References #492 Added Services for RawBioAssay? and ArrayDesign?. Each …
- 2:59 PM Changeset [3860] by
- References #721: Started to update the docbook documentation with …
- 12:03 PM Changeset [3859] by
- References #789: Extend "Experiment overview" to check for problems …
- 9:40 AM WikiStart edited by
- Changed link to BASE plug-ins web site (diff)
Oct 17, 2007:
- 7:15 PM Changeset [3858] by
- References #794: Additional fix needed in trunk due to API changes in …
- 1:39 PM Ticket #806 (Experimental factor values display on Experiment page can only display ...) created by
- Problem was posted on the mailing list: >> >> We are trying to …
- 12:41 PM Changeset [3857] by
- Merged patch release 2.4.4 to the trunk. Delta 2.4.4 - 2.4.3
- 11:58 AM DownloadPage edited by
- Releasing 2.4.4 (diff)
- 11:30 AM Changeset [3856] by
- Changes for future release 2.4.5
- 11:27 AM Changeset [3855] by
- Tagging version 2.4.4
- 11:27 AM Milestone BASE 2.4.4 completed
- Revision Log: log:branches/2.4-stable@3788:3854
- 11:20 AM Changeset [3854] by
- Preparing release 2.4.4
- 11:18 AM Ticket #796 (Don't create indexes on primary key columns for tables in the dynamic ...) closed by
- fixed: The tests shows that the fixes improve performance, i.e., creation of …
- 11:14 AM Ticket #751 (Fail to delete item from table view) closed by
- invalid: Seems to have been caused by Tomcat being overloaded.
- 11:09 AM Ticket #737 (Script that fixes copyright text may also add extra new line to end of ...) closed by
- invalid: This was an issue here for the affected files, but the problem belongs …
- 11:04 AM Ticket #748 (MeV application fail to load data) closed by
- worksforme
- 10:25 AM Changeset [3853] by
- Fixes #768.
- 10:25 AM Ticket #768 (Add information about running reporter update after migration if needed) closed by
- fixed: (In [3853]) Fixes #768.
- 9:58 AM Changeset [3852] by
- References #721: Auto-detect function is now aware of FileStoreEnabled? …
- 8:56 AM Changeset [3851] by
- References #721: Filter on file extension when selecting platform data …
- 8:45 AM Changeset [3850] by
- References #788: Select project default platforms / variant The …
- 8:29 AM Changeset [3849] by
- References #492 Updating license information and 3rd party components
- 8:17 AM Changeset [3848] by
- References #721: Can now edit raw bioassays, array designs and …
- 7:52 AM Ticket #788 (Select project default platforms / variant) closed by
- fixed: (In [3847]) Fixes #788: Select project default platforms / variant
- 7:52 AM Changeset [3847] by
- Fixes #788: Select project default platforms / variant
Oct 16, 2007:
- 10:23 PM Ticket #804 (Add links to example code in the Plugins section of the documentation) closed by
- worksforme: It is section 23.7: …
- 4:52 PM Changeset [3846] by
- References #492 Copying webservices into trunk
- 3:18 PM Changeset [3845] by
- References #492 Copying webservices into trunk
- 3:12 PM Changeset [3844] by
- References #492 Copying webservices into trunk
- 2:51 PM Changeset [3843] by
- References #492 Copying webservices into trunk
- 2:50 PM Changeset [3842] by
- References #492 Copying webservices into trunk
- 2:44 PM Changeset [3841] by
- References #492 Copying webservices into trunk
- 1:50 PM Changeset [3840] by
- Fixes #667.
- 1:50 PM Ticket #667 (Move ch. 7 to a lower level) closed by
- fixed: (In [3840]) Fixes #667.
- 1:41 PM Changeset [3839] by
- References #492 Updated javadoc
- 1:38 PM Changeset [3838] by
- Fixes #805: Add syntax coloring to code examples in docbook
- 1:38 PM Ticket #805 (Add syntax coloring to code examples in docbook) closed by
- fixed: (In [3838]) Fixes #805: Add syntax coloring to code examples in docbook
- 1:38 PM Ticket #805 (Add syntax coloring to code examples in docbook) created by
- 10:43 AM Ticket #804 (Add links to example code in the Plugins section of the documentation) created by
- It may already exist but this needs t be checked.
- 10:40 AM Ticket #730 (Documentation figures should be centered by default) closed by
- worksforme
Oct 15, 2007:
- 7:43 PM Changeset [3837] by
- No longer implement the FilenameFilter? interface since it couldn't be …
- 2:58 PM Changeset [3836] by
- References #492 A BioAssaySet? can now be downloaded in MeV-format …
- 2:26 PM Changeset [3835] by
- References #721. Updated documentation.
- 1:55 PM Changeset [3834] by
- Export methods that take an OutputStream? as a parameter are now public …
- 9:36 AM Changeset [3833] by
- Updated "Development ideas" with information about already implemented …
- 9:25 AM Changeset [3832] by
- References #364. * Test program now looks for the test plug-ins: …
- 8:27 AM Changeset [3831] by
- References #492 Updated copyright statement
Oct 13, 2007:
- 12:48 AM Changeset [3830] by
- Adding files that was not merged from trunk previously.
Oct 12, 2007:
- 11:08 PM Changeset [3829] by
- Fixing copyright statement.
- 11:07 PM Changeset [3828] by
- Fixing svn properties and eol characters.
- 9:04 PM Changeset [3827] by
- Merged log:trunk#3795:3824 into webservices branch.
- 4:09 PM Changeset [3826] by
- References #492 Extended the services for bioassaysets. A download …
- 3:06 PM Changeset [3825] by
- Fixes #803: Experiment overview is broken if protocols with …
- 3:06 PM Ticket #803 (Experiment overview is broken if protocols with non-predefined ...) closed by
- fixed: (In [3825]) Fixes #803: Experiment overview is broken if protocols …
- 2:57 PM Ticket #803 (Experiment overview is broken if protocols with non-predefined ...) created by
- A predefined protocol type is a protocol type which has a system ID. …
- 2:47 PM Changeset [3824] by
- Fixes #802: Migration should attach data files to array design and raw …
- 2:47 PM Ticket #802 (Migration should attach data files to array design and raw bioassays) closed by
- fixed: (In [3824]) Fixes #802: Migration should attach data files to array …
- 1:46 PM Changeset [3823] by
- Fixed spelling on the word 'everything'.
- 12:27 PM Changeset [3822] by
- Fixes #801: Code for the "Recently viewed items" menu is unstable when …
- 12:27 PM Ticket #801 (Code for the "Recently viewed items" menu is unstable when data is in ...) closed by
- fixed: (In [3822]) Fixes #801: Code for the "Recently viewed items" menu is …
- 12:10 PM Ticket #802 (Migration should attach data files to array design and raw bioassays) created by
- Depends on #721. This information has not been possible to transfer to …
- 12:04 PM Changeset [3821] by
- Delete filedb branch since it has now been merged into the trunk
- 12:03 PM Changeset [3820] by
- Merged branches/filedb into trunk.
- 11:30 AM Changeset [3819] by
- Merged log:trunk#3795:3815 into filedb branch
- 11:14 AM Changeset [3818] by
- References #721: Store data in files instead of in the database * …
Oct 11, 2007:
- 7:32 PM Ticket #801 (Code for the "Recently viewed items" menu is unstable when data is in ...) created by
- I have the following setup: […] Without changing anything, today …
- 3:38 PM Changeset [3817] by
- References #721: Store data in files instead of in the database * …
Oct 10, 2007:
- 5:32 PM Ticket #800 (Make the Illumina importer accept tab as data delimiter and comma as ...) created by
- My Illumina files are not comma separted but tab separeted. Can you …
- 4:48 PM Changeset [3816] by
- References #492 Start working on services for BioAssaySets? and added a …
- 2:58 PM Changeset [3815] by
- Fixes #799. The same bug was found when BASE tries to look in the …
- 2:58 PM Ticket #799 (External plugin installer fails when jars don't have base-plugin.xml) closed by
- fixed: (In [3815]) Fixes #799. The same bug was found when BASE tries to look …
- 2:57 PM Changeset [3814] by
- References #721: Store data in files instead of in the database * …
- 2:30 PM Ticket #799 (External plugin installer fails when jars don't have base-plugin.xml) created by
- 1:44 PM Changeset [3813] by
- References #492 -Made it possible to send restrictions and …
- 11:46 AM Changeset [3812] by
- References #721: Store data in files instead of in the database * …
Oct 9, 2007:
- 7:13 PM Ticket #798 (Stopping job agent should stop jobs gracefully and set status killed ...) closed by
- duplicate: Duplicate of #636.
- 4:21 PM Ticket #798 (Stopping job agent should stop jobs gracefully and set status killed ...) created by
- 2:15 PM Changeset [3811] by
- References #796: Don't create indexes on primary key columns for …
- 12:06 PM Changeset [3810] by
- References #796: Don't create indexes on primary key columns for …
- 9:47 AM Ticket #797 (Enhance performance for LOWESS and Medin-ratio plug-ins) created by
- The performance tests (#294) shows that the LOWESS plug-in has bad …
- 9:38 AM Ticket #796 (Don't create indexes on primary key columns for tables in the dynamic ...) created by
- The performance testing (#294) discovered that a lot of indexes are …
Oct 8, 2007:
- 12:17 PM Changeset [3809] by
- Fixes #793: Job agent get logged out when waiting for a job to finish …
- 12:17 PM Ticket #793 (Job agent get logged out when waiting for a job to finish) closed by
- fixed: (In [3809]) Fixes #793: Job agent get logged out when waiting for a …
- 11:25 AM Ticket #794 (Long query may cause session to timeout) closed by
- fixed: (In [3808]) Fixes #794: Long query may cause session to timeout
- 11:25 AM Changeset [3808] by
- Fixes #794: Long query may cause session to timeout
- 7:49 AM Ticket #795 (Base1PluginExecuter throw PermissionDeniedException: Data cube has ...) created by
- I'm running base-2.4.2 on tomcat 6.0.14. I'm running a base1 plugin. …
- 3:50 AM ReleaseProcedure edited by
- fixed typo (diff)
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