Timeline
Dec 24, 2007:
- 10:39 PM ReleaseProcedure edited by
- updating link to svndigest (diff)
Dec 20, 2007:
- 2:47 PM Changeset [4073] by
- References #636: Kill a running job Infrastructure for signal …
Dec 19, 2007:
- 4:10 PM Changeset [4072] by
- Fixes #762 Provide operators 'In' and 'Not in' when filtering a list
- 4:10 PM Ticket #762 (Provide operators 'In' and 'Not in' when filtering a list) closed by
- fixed: (In [4072]) Fixes #762 Provide operators 'In' and 'Not in' when …
- 2:02 PM Changeset [4071] by
- References #762 The functionality is now completely implemented. It …
Dec 18, 2007:
- 11:31 AM Changeset [4070] by
- Fixes #790: Job slot status information on job agent view
- 11:31 AM Ticket #790 (Job slot status information on job agent view) closed by
- fixed: (In [4070]) Fixes #790: Job slot status information on job agent view
Dec 17, 2007:
- 11:11 AM Ticket #886 (Make sure that plug-in and web services examples can be downloaded ...) created by
- The current links are pointing to a temporary location. The packages …
- 11:05 AM DeveloperInformation edited by
- Added links to packages with example code (diff)
- 9:05 AM Changeset [4069] by
- References #880: Corrected @since annotation (=2.6)
- 9:02 AM Ticket #880 (Exclude reporters in Lowess) closed by
- fixed: (In [4068]) Fixes #880: Exclude reporters in Lowess
- 9:02 AM Changeset [4068] by
- Fixes #880: Exclude reporters in Lowess
Dec 14, 2007:
- 4:48 PM Changeset [4067] by
- References #762 Updated PropertyFilter? class to use the new operators.
- 4:05 PM Changeset [4066] by
- Fixes #885
- 4:05 PM Ticket #885 (Base1PluginExecuter has to short string input field) closed by
- fixed: (In [4066]) Fixes #885
- 3:44 PM Ticket #884 (Base1PluginExecuter has to short string input field) closed by
- duplicate: dupicate #885
- 3:37 PM Ticket #884 (Base1PluginExecuter has to short string input field) created by
- The string input field for jobparameters is set to default 255 but …
- 3:37 PM Ticket #885 (Base1PluginExecuter has to short string input field) created by
- The string input field for jobparameters is set to default 255 but …
- 2:34 PM Changeset [4065] by
- Fixes #870 and #883: Overview plots and correction factor plots should …
- 2:34 PM Tickets #883,870 batch updated by
- fixed: (In [4065]) Fixes #870 and #883: Overview plots and correction factor …
- 2:33 PM Ticket #883 (Overview plots and correction factor plots should be loaded one by one) created by
- For background info, see #870: OutOfMemory? when creating correction …
- 2:31 PM Changeset [4064] by
- Fixes #882: list_annotations.jsp has an extra </div> tag with no …
- 2:31 PM Ticket #882 (list_annotations.jsp has an extra </div> tag with no corresponding ...) closed by
- fixed: (In [4064]) Fixes #882: list_annotations.jsp has an extra </div> tag …
- 2:31 PM Ticket #882 (list_annotations.jsp has an extra </div> tag with no corresponding ...) created by
- 2:30 PM Changeset [4063] by
- Fixes #881: Page taglib with type="include" generates </html> tag
- 2:30 PM Ticket #881 (Page taglib with type="include" generates </html> tag) closed by
- fixed: (In [4063]) Fixes #881: Page taglib with type="include" generates …
- 2:26 PM Ticket #881 (Page taglib with type="include" generates </html> tag) created by
- It is used for page parts which are included inside other pages. Thus …
- 1:12 PM Ticket #880 (Exclude reporters in Lowess) created by
- New parameter in Lowess: exclude reporters The user chooses a …
- 12:12 PM Changeset [4062] by
- Fixes #837: Lowess plugin. Error: Sum of weigths in line_fit is not …
- 12:12 PM Ticket #837 (Lowess plugin. Error: Sum of weigths in line_fit is not positive) closed by
- fixed: (In [4062]) Fixes #837: Lowess plugin. Error: Sum of weigths in …
- 12:09 PM Changeset [4061] by
- Fixes #838: Change default value of Blockgroup size to 0 in Lowess
- 12:09 PM Ticket #838 (Change default value of Blockgroup size to 0 in Lowess) closed by
- fixed: (In [4061]) Fixes #838: Change default value of Blockgroup size to 0 …
- 11:59 AM Ticket #879 (Add column holding the filename of last file used for updating ...) created by
- This is to simple let everyone know where the annotations are coming …
- 10:58 AM Changeset [4060] by
- Fixes #878: Exporting files as a compressed archive may throw an …
- 10:58 AM Ticket #878 (Exporting files as a compressed archive may throw an exception if done ...) closed by
- fixed: (In [4060]) Fixes #878: Exporting files as a compressed archive may …
- 10:00 AM Ticket #878 (Exporting files as a compressed archive may throw an exception if done ...) created by
- Here is the stacktrace: […] This happens because the path up to …
- 9:55 AM Changeset [4059] by
- Fixes #749: TAR files with long files names are not supported
- 9:55 AM Ticket #749 (TAR files with long files names are not supported) closed by
- fixed: (In [4059]) Fixes #749: TAR files with long files names are not supported
Dec 13, 2007:
- 3:19 PM Changeset [4058] by
- References #762 Added four new Operators and started to implement them …
- 1:45 PM Ticket #771 (Make annotations for Bioassays available in bioassay table within a ...) closed by
- fixed: (In [4057]) Fixes #771: Make annotations for Bioassays available in …
- 1:45 PM Changeset [4057] by
- Fixes #771: Make annotations for Bioassays available in bioassay table …
Dec 12, 2007:
- 2:40 PM Ticket #877 (Illumina SNP validator and meta-data extractor) created by
- The data files hsould be validated automagically and some data such as …
- 2:34 PM Ticket #876 (Illumina plug-ins: Illumina expression raw data types comes from 2 sources) created by
- Illumina data is exported from the scanner or BeadStudio. The two …
- 2:29 PM Ticket #875 (Create Illumina SNP raw data type) created by
- Needed for SNP data from the Illumina platform. The raw files are to …
- 2:24 PM Ticket #874 (Plugin to create array designs from an Illumina bgx-file.) created by
- The plug-in needs a validator and meta-data extractor. Depends on …
- 1:57 PM Ticket #866 (Performance testing creating root Bioassay set) closed by
- wontfix
- 9:35 AM Changeset [4056] by
- Fixes #873: AbstractFlatFileImporter? should use number of parsed bytes …
- 9:35 AM Ticket #873 (AbstractFlatFileImporter should use number of parsed bytes for ...) closed by
- fixed: (In [4056]) Fixes #873: AbstractFlatFileImporter? should use number of …
- 9:23 AM Ticket #873 (AbstractFlatFileImporter should use number of parsed bytes for ...) created by
- It currently uses the number of parsed characters, which may be …
- 9:20 AM Ticket #800 (Make the Illumina importer accept tab as data delimiter and comma as ...) closed by
- fixed: (In [4055]) Fixes #800: Make the Illumina importer accept tab as data …
- 9:20 AM Changeset [4055] by
- Fixes #800: Make the Illumina importer accept tab as data delimiter …
Dec 11, 2007:
- 11:51 AM Ticket #865 (Progress reporter implementation should detect and handle negative ...) closed by
- fixed: (In [4054]) Fixes #865 Progress reporter implementation should detect …
- 11:51 AM Changeset [4054] by
- Fixes #865 Progress reporter implementation should detect and handle …
Dec 10, 2007:
- 11:56 AM Changeset [4053] by
- Fixes #872: Auto-compression based on file extension should not be …
- 11:56 AM Ticket #872 (Auto-compression based on file extension should not be case sensitive) closed by
- fixed: (In [4053]) Fixes #872: Auto-compression based on file extension …
- 11:43 AM Changeset [4052] by
- Fixes #871: 'Roles' test program should use *.tar.bz2 files instead of …
- 11:43 AM Ticket #871 ('Roles' test program should use *.tar.bz2 files instead of *.bz2) closed by
- fixed: (In [4052]) Fixes #871: 'Roles' test program should use *.tar.bz2 …
- 11:42 AM Ticket #872 (Auto-compression based on file extension should not be case sensitive) created by
- This depends on the database engine since the extension matching is …
- 11:16 AM Ticket #871 ('Roles' test program should use *.tar.bz2 files instead of *.bz2) created by
- The testdata for the 'roles' test program has used *.bz2 files. The …
- 8:22 AM Ticket #869 (Upload + unpack of compressed file may corrupt data) closed by
- fixed: (In [4051]) Fixes #869: Upload + unpack of compressed file may corrupt data
- 8:22 AM Changeset [4051] by
- Fixes #869: Upload + unpack of compressed file may corrupt data
Dec 7, 2007:
- 5:22 PM Ticket #870 (OutOfMemory when creating correction factor plot) created by
- I get an OutOfMemoryError? when I try to create correction factor plot, …
- 1:57 PM Changeset [4050] by
- Fixes #864 Some core plug-ins report negative progress values in large …
- 1:57 PM Ticket #864 (Some core plug-ins report negative progress values in large experiments) closed by
- fixed: (In [4050]) Fixes #864 Some core plug-ins report negative progress …
- 9:56 AM Ticket #869 (Upload + unpack of compressed file may corrupt data) created by
- When uploading some compressed files and selecting to decompress them …
- 9:06 AM Ticket #868 (Support for chips with multiple arrays) created by
- Illumina array slides are special in that they contain multiple …
- 8:51 AM Ticket #867 (Support for array designs without coordinate/position information for ...) created by
- This ticket has been replaced by #894. The current way of using an …
- 8:29 AM Changeset [4049] by
- Changes for future release 2.6
Dec 6, 2007:
- 11:10 PM ReleaseProcedure edited by
- (diff)
- 11:08 PM Milestone BASE 2.5 completed
- Starting from this release, we will only support Java 6 (SDK 1.6), …
- 11:06 PM Changeset [4048] by
- Changes for future release 2.5.1.
- 11:01 PM Changeset [4047] by
- New stable minor version 2.5 branch.
- 11:00 PM DownloadPage edited by
- (diff)
- 10:51 PM DownloadPage edited by
- (diff)
- 10:50 PM DownloadPage edited by
- Releasing 2.5 (diff)
- 10:44 PM Changeset [4046] by
- Tagging version 2.5
- 10:42 PM ReleaseProcedure edited by
- (diff)
- 4:20 PM Changeset [4045] by
- Preparing release 2.5
- 3:09 PM Changeset [4044] by
- Addresses #693. Removed references to plain matrix in GUI.
- 3:04 PM Ticket #726 (Add nice screen shots to the documentation section in the wiki.) closed by
- fixed
- 3:04 PM Features edited by
- (diff)
- 3:00 PM Ticket #593 (Write "Appendix: Core plug-ins shipped with BASE") closed by
- fixed: (In [4043]) Fixes #593.
- 3:00 PM Changeset [4043] by
- Fixes #593.
- 2:42 PM Features edited by
- (diff)
- 2:42 PM Features edited by
- (diff)
- 2:40 PM Features edited by
- (diff)
- 2:39 PM Features edited by
- (diff)
- 2:21 PM Features edited by
- (diff)
- 2:07 PM Features edited by
- (diff)
- 2:01 PM Features edited by
- (diff)
- 1:53 PM Features edited by
- (diff)
- 1:53 PM Features edited by
- (diff)
- 1:52 PM Features edited by
- (diff)
- 1:50 PM Features edited by
- (diff)
- 12:55 PM Changeset [4042] by
- Fixes problem with 'ant web.jsp' target if Tomcat 6 is used.
- 11:24 AM Ticket #866 (Performance testing creating root Bioassay set) created by
- Time taken for creating root Bioassay set in highly variable when …
- 11:12 AM Changeset [4041] by
- Fixes #863: Displayed rows in bioassay set table limited to 60 Was …
- 11:12 AM Ticket #863 (Displayed rows in bioassay set table limited to 60?) closed by
- fixed: (In [4041]) Fixes #863: Displayed rows in bioassay set table limited …
- 10:41 AM Ticket #865 (Progress reporter implementation should detect and handle negative ...) created by
- For a background see #864. Since external plug-ins are likely to have …
- 10:40 AM Ticket #864 (Some core plug-ins report negative progress values in large experiments) created by
- In experiments where the number of spots is larger than ~20M, the …
- 10:32 AM Ticket #863 (Displayed rows in bioassay set table limited to 60?) created by
- In an experiment the Bioassay sets table will only display 60 rows. …
Dec 5, 2007:
- 4:49 PM Ticket #847 (Update javadoc) closed by
- fixed: (In [4040]) Fixes #847 Most of the missing javadocs tags have been …
- 4:49 PM Changeset [4040] by
- Fixes #847 Most of the missing javadocs tags have been added in the …
- 3:39 PM Changeset [4039] by
- References #850: SQL for checking schema version in BASE 1 should be …
- 3:38 PM Ticket #862 (Web services server doesn't return exceptions from methods marked as 'void') closed by
- fixed: (In [4038]) Fixes #862: Web services server doesn't return exceptions …
- 3:38 PM Changeset [4038] by
- Fixes #862: Web services server doesn't return exceptions from methods …
- 2:16 PM Changeset [4037] by
- Fixes #861
- 2:16 PM Ticket #861 (Base1PluginExecuter doesn't return error stream) closed by
- fixed: (In [4037]) Fixes #861
- 2:08 PM Ticket #862 (Web services server doesn't return exceptions from methods marked as 'void') created by
- For example, trying to use the SessionService?.login() method with an …
- 1:58 PM Ticket #861 (Base1PluginExecuter doesn't return error stream) created by
- When Base1Executer exits with status done the error strem is …
- 11:31 AM Ticket #294 (Performance testing: Plugin-in execution time) closed by
- fixed
- 11:23 AM Ticket #721 (Store data in files instead of in the database) closed by
- fixed
- 9:39 AM Changeset [4036] by
- Fixes #851: Migration doesn't transfer 'reportermap' wizzzard …
- 9:39 AM Ticket #851 (Migration doesn't transfer 'reportermap' wizzzard configurations) closed by
- fixed: (In [4036]) Fixes #851: Migration doesn't transfer 'reportermap' …
- 9:13 AM Ticket #860 (Migration should create File entries even if physical file doesn't ...) closed by
- fixed: (In [4035]) Fixes #860: Migration should create File entries even if …
- 9:13 AM Changeset [4035] by
- Fixes #860: Migration should create File entries even if physical file …
- 8:49 AM Ticket #860 (Migration should create File entries even if physical file doesn't ...) created by
- If the physical file doesn't exists on the BASE 1 server nothing is …
- 8:21 AM Changeset [4034] by
- References #847 Updated some javadocs. Added some missing tags.
Dec 4, 2007:
- 4:45 PM Ticket #859 (Downloading file from web services fails if the filename in BASE ...) closed by
- fixed: (In [4033]) Fixes #859 Downloading file from web services fails if the …
- 4:45 PM Changeset [4033] by
- Fixes #859 Downloading file from web services fails if the filename in …
- 4:10 PM Ticket #859 (Downloading file from web services fails if the filename in BASE ...) created by
- This is probably because the file name is used as an element name in …
- 1:16 PM Changeset [4032] by
- Fixes #850: SQL for checking schema version in BASE 1 should be …
- 1:16 PM Ticket #850 (SQL for checking schema version in BASE 1 should be externalized) closed by
- fixed: (In [4032]) Fixes #850: SQL for checking schema version in BASE 1 …
- 1:10 PM Changeset [4031] by
- Removed debug output.
Dec 3, 2007:
- 1:29 PM Changeset [4030] by
- Fixes #858: Display database name when starting initdb and updatedb scripts
- 1:29 PM Ticket #858 (Display database name when starting initdb and updatedb scripts) closed by
- fixed: (In [4030]) Fixes #858: Display database name when starting initdb and …
- 1:05 PM Ticket #858 (Display database name when starting initdb and updatedb scripts) created by
- I often find myself trying to install or update the incorrect …
- 9:08 AM Ticket #854 (Extend test procedure for predefined roles) closed by
- fixed: Test runs worked fine.
- 8:45 AM Changeset [4029] by
- Fixes #856: Default platform / raw data type for a project is not used …
- 8:45 AM Ticket #856 (Default platform / raw data type for a project is not used when ...) closed by
- fixed: (In [4029]) Fixes #856: Default platform / raw data type for a project …
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