Timeline
Apr 17, 2008:
- 3:05 PM Changeset [4233] by
- References #436: Create extension system for the web application …
- 2:25 PM Ticket #995 (Add link to closed tickets for each milestone on DownloadPage) closed by
- fixed
- 2:25 PM DownloadPage edited by
- Fixes #995 (diff)
- 2:06 PM Changeset [4232] by
- Merged patch release 2.6.2 to the trunk. Delta 2.6.2 - 2.6.1
- 1:53 PM Ticket #995 (Add link to closed tickets for each milestone on DownloadPage) created by
- It is a bit difficult to get to know what has been fixed for each …
- 1:38 PM Milestone BASE 2.6.2 completed
- Bug fixes for 2.6.1. Revision log: log:branches/2.6-stable@4191:4230
- 1:37 PM DownloadPage edited by
- Releasing 2.6.2 (diff)
- 1:31 PM Changeset [4231] by
- Changes for future release 2.6.3
- 1:19 PM Changeset [4230] by
- Tagging version 2.6.2
- 1:19 PM Changeset [4229] by
- Preparing release 2.6.2
- 1:18 PM Changeset [4228] by
- References #957: Base1PluginExecuter doesn't import plug-in generated …
- 12:30 PM Tickets #990,991 batch updated by
- fixed: (In [4227]) Fixes #990 and #991: Change default create date... and …
- 12:30 PM Changeset [4227] by
- Fixes #990 and #991: Change default create date... and Created date - …
- 12:17 PM Changeset [4226] by
- Fixes #961: Expand the maximum number of characters accepted by filter …
- 12:17 PM Ticket #961 (Expand the maximum number of characters accepted by filter input box) closed by
- fixed: (In [4226]) Fixes #961: Expand the maximum number of characters …
Apr 16, 2008:
- 8:15 AM Changeset [4225] by
- References #989: Add support for using extension classes in custom JSP …
- 8:02 AM Changeset [4224] by
- References #436: Create extension system for the web application Svn …
Apr 15, 2008:
- 10:09 PM Ticket #927 (Image Macro fails on Feature Trac Page) closed by
- fixed
- 9:59 PM Features edited by
- (diff)
- 8:14 PM Changeset [4223] by
- References #989: Add support for using extension classes in custom JSP …
- 2:24 PM Changeset [4222] by
- References #989: Add support for using extension classes in custom JSP …
- 12:18 PM Ticket #994 (Create GAL export plug-in for array designs) created by
- Add functionality to create/download GAL files from array designs …
- 10:05 AM Ticket #993 (Paste multiple barcodes in the Multiple slides wizard) created by
- In BASE2, multiple array slides can be created using the “Multiple …
Apr 14, 2008:
- 7:29 PM Ticket #957 (Base1PluginExecuter doesn't import plug-in generated BASEfiles as expected) closed by
- fixed: I am closing this now so we can release 2.6.2. New or remaining bugs …
- 7:13 PM Ticket #992 (Regular expressions with backslashes trigger "Not allowed to use ...) closed by
- wontfix: This can't be fixed. A column mapping ends as soon as a \ is …
- 5:34 PM Ticket #992 (Regular expressions with backslashes trigger "Not allowed to use ...) created by
- I have some raw data files with column headings F635 Median and …
- 2:40 PM Changeset [4221] by
- References #988: Add support for servlets in extensions The main …
- 7:53 AM Ticket #955 (Array slides – make test for barcode uniqueness) closed by
- fixed: (In [4220]) Fixes #955: Array slides ?\226?\128?\147 make test for …
- 7:53 AM Changeset [4220] by
- Fixes #955: Array slides – make test for barcode uniqueness
Apr 11, 2008:
- 5:36 PM Ticket #991 (Created date - auto changed from blank when edit sample) created by
- When editing a sample that does not have Creation date defined …
- 5:32 PM Ticket #990 (Change default create date for samples (and other items).) created by
- When adding Samples the Created date is by default set to current …
- 1:57 PM Ticket #986 (Move example code for web services to the BASE plug-ins site) closed by
- fixed
- 1:54 PM Changeset [4219] by
- References #986: Move example code for web services to the BASE …
- 11:49 AM Ticket #898 (Move example code for plug-ins to the BASE plug-ins site) closed by
- fixed
- 11:46 AM DeveloperInformation edited by
- Changed documentation links (diff)
- 11:41 AM DeveloperInformation edited by
- Link to new site for examples (diff)
- 10:58 AM Changeset [4218] by
- References #898: Move example code for plug-ins to the BASE plug-ins …
Apr 10, 2008:
- 9:47 PM Ticket #989 (Add support for using extension classes in custom JSP pages) created by
- An extensions that uses custom JSP pages are currently limited to use …
- 9:31 PM Ticket #988 (Add support for servlets in extensions) created by
- This is "needed" by the MeV launcher. It currently uses the MevExport? …
- 6:07 PM Ticket #987 (NullPointerException in "Test with file" function if no "data header ...) created by
- When using Annotation importer. Input file is small and contains two …
- 2:34 PM Ticket #986 (Move example code for web services to the BASE plug-ins site) created by
- Was part of #898. Better to have this as it's own ticket.
- 2:28 PM Changeset [4217] by
- References #436: Create extension system for the web application …
- 2:23 PM Changeset [4216] by
- Fixes #985: File sizes are not correctly rounded Also fixed so that …
- 2:23 PM Ticket #985 (File sizes are not correctly rounded) closed by
- fixed: (In [4216]) Fixes #985: File sizes are not correctly rounded Also …
- 1:58 PM Ticket #985 (File sizes are not correctly rounded) created by
- I uploaded a file which size is 4050 (~3.995Kb) bytes in size. This is …
- 1:52 PM Changeset [4215] by
- Fixes #984: Bioassays may show up duplicated in list of bioassays The …
- 1:52 PM Ticket #984 (Bioassays may show up duplicated in list of bioassays) closed by
- fixed: (In [4215]) Fixes #984: Bioassays may show up duplicated in list of …
- 1:45 PM Ticket #983 (update.sh script doesn't validate parameters) closed by
- fixed: (In [4214]) Fixes #983: update.sh script doesn't validate parameters
- 1:45 PM Changeset [4214] by
- Fixes #983: update.sh script doesn't validate parameters
- 1:42 PM Changeset [4213] by
- Fixes #980: Items created by jobs are not shared to the active project.
- 1:42 PM Ticket #980 (Items created by jobs are not shared to the active project.) closed by
- fixed: (In [4213]) Fixes #980: Items created by jobs are not shared to the …
- 12:53 PM Changeset [4212] by
- References #957: Base1PluginExecuter doesn't import plug-in generated …
- 12:18 PM Ticket #984 (Bioassays may show up duplicated in list of bioassays) created by
- I am not really sure why this is happening. Sometimes a bioassay …
- 12:09 PM Ticket #983 (update.sh script doesn't validate parameters) created by
- I am following the Illumina plug-in installation recipe and read that …
Apr 9, 2008:
- 4:08 PM Ticket #982 (Wrong destination (for shared to user) from link to directory from ...) created by
- After running a plugin (that creates directories and files and …
- 3:16 PM Ticket #981 (Share all subdirectories and files when sharing a directory) created by
- When sharing a directory, its subdirectories and files are not shared. …
- 3:15 PM Ticket #980 (Items created by jobs are not shared to the active project.) created by
- The user case: When working in an active project I run a plugin in an …
- 2:44 PM Ticket #979 (Biomaterial LIMS) created by
- Enhancing biomaterial management in BASE by adding Biomaterial LIMS …
Apr 8, 2008:
- 2:16 PM Ticket #978 (Unzipped files never inherit file type specified during upload) created by
- There should perhaps be an option to unpack an uploaded zip file …
Apr 7, 2008:
- 2:02 PM Changeset [4211] by
- Fixes #970: PluginConfigurationImporter? doesn't support multi-valued …
- 2:02 PM Ticket #970 (PluginConfigurationImporter doesn't support multi-valued parameters) closed by
- fixed: (In [4211]) Fixes #970: PluginConfigurationImporter? doesn't support …
- 1:48 PM Changeset [4210] by
- Fixes #977: ClassCastException? in Experiment overview when clicking on …
- 1:48 PM Ticket #977 (ClassCastException in Experiment overview when clicking on an ...) closed by
- fixed: (In [4210]) Fixes #977: ClassCastException? in Experiment overview when …
- 1:24 PM Ticket #977 (ClassCastException in Experiment overview when clicking on an ...) created by
- 1. Select an experiment which has at least one experimental factor. …
- 1:19 PM Changeset [4209] by
- Fixes #976: NullPointerException? in Experiment overview
- 1:19 PM Ticket #976 (NullPointerException in Experiment overview) closed by
- fixed: (In [4209]) Fixes #976: NullPointerException? in Experiment overview
- 1:01 PM Changeset [4208] by
- References #436: Create extension system for the web application …
- 12:19 PM Ticket #976 (NullPointerException in Experiment overview) created by
- The original report is found in #975. I have now been able to …
Apr 4, 2008:
- 6:36 PM Ticket #975 (Experimental overview – error/erroneous warning – Duplicate sub-array index) created by
- Working in an experiment containing 3 raw bioassays, all from the same …
- 2:44 PM Changeset [4207] by
- References #436: Create extension system for the web application …
- 8:42 AM Changeset [4206] by
- References #436: Create extension system for the web application …
Apr 3, 2008:
- 11:34 AM Ticket #974 (Link from raw bioassay to job that imported the raw data) created by
- This ticket relates to ticket:750 A user scenario involves going back …
Apr 2, 2008:
- 8:41 PM Ticket #973 (Add a 'svn.update' target to the build file) closed by
- fixed: (In [4205]) Fixes #973: Add a 'svn.update' target to the build file
- 8:41 PM Changeset [4205] by
- Fixes #973: Add a 'svn.update' target to the build file
- 7:54 PM Ticket #973 (Add a 'svn.update' target to the build file) created by
- This would simplify automatic generation of the documentation. After …
- 5:06 PM Ticket #972 (Assign job to experiment when the job is created) created by
- This ticket concerns jobs running in experiments. Typically, a user …
- 1:46 PM Ticket #971 (Be able to upgrade BASE without restarting Tomcat) closed by
- invalid: This is problem with Tomcat.
- 1:20 PM Ticket #971 (Be able to upgrade BASE without restarting Tomcat) created by
- I just upgraded our dev server (system info below) […] and found …
- 12:43 PM Ticket #970 (PluginConfigurationImporter doesn't support multi-valued parameters) created by
- From the mailing list: …
- 10:44 AM Changeset [4204] by
- Fixes #969: Annotation importer doesn't save "Owned by ..." parameter …
- 10:44 AM Ticket #969 (Annotation importer doesn't save "Owned by ..." parameter values) closed by
- fixed: (In [4204]) Fixes #969: Annotation importer doesn't save "Owned by …
- 9:43 AM Ticket #963 (New hybridization... button on labelled extract page doesn't work as ...) closed by
- fixed: (In [4203]) Fixes #963: New hybridization... button on labelled …
- 9:43 AM Changeset [4203] by
- Fixes #963: New hybridization... button on labelled extract page …
Apr 1, 2008:
- 7:24 PM Ticket #969 (Annotation importer doesn't save "Owned by ..." parameter values) created by
- It seems like the annotation importer doesn't save which option has …
- 3:30 PM Ticket #968 (Raw data importer – Enhance feature mismatch error handling) created by
- Feature mismatch error handling when importing raw data concerns how …
- 3:18 PM Ticket #967 (Assign the parent directory permissions to new files/directories) created by
- I made a /home/shared folder and gave it Everyone RU permissions. The …
- 2:55 PM Changeset [4202] by
- References #436: Create extension system for the web application All …
- 2:43 PM Ticket #966 (Registered and possibly last updated – add to all/most items) created by
- Some items, such as Samples, have a Registered property, i.e., the …
- 2:25 PM Ticket #965 (Filtering the list – selection list vs. input box for enumeration type ...) created by
- This ticket is somewhat related to ticket:962 but more specifically …
Mar 31, 2008:
- 8:41 PM Ticket #964 (Support preset filter list with null/not null values) created by
- Currently, when a preset filter uses a list of predefined values you …
- 2:58 PM Ticket #963 (New hybridization... button on labelled extract page doesn't work as ...) created by
- When clicking on the "New hybridization..." action button on a labeled …
- 12:44 PM Ticket #962 (Filtering the list – ”not equal to” operator for selection list options) created by
- When filtering an item list some columns that can only take a few …
- 12:13 PM Ticket #961 (Expand the maximum number of characters accepted by filter input box) created by
- If an item list contains many items you may need to use a filter to be …
- 10:48 AM Changeset [4201] by
- Fixes #958: Document that the migration program is no longer actively …
- 10:48 AM Ticket #958 (Document that the migration program is no longer actively tested or ...) closed by
- fixed: (In [4201]) Fixes #958: Document that the migration program is no …
- 10:00 AM Ticket #960 (Removing a user from a group doesn't work if the user is a quota group ...) closed by
- fixed: (In [4200]) Fixes #960: Removing a user from a group doesn't work if …
- 10:00 AM Changeset [4200] by
- Fixes #960: Removing a user from a group doesn't work if the user is a …
- 9:59 AM Ticket #959 (Users may be duplicated in group member list for quota groups) closed by
- fixed: (In [4199]) Fixes #959: Users may be duplicated in group member list …
- 9:59 AM Changeset [4199] by
- Fixes #959: Users may be duplicated in group member list for quota groups
- 9:58 AM Ticket #960 (Removing a user from a group doesn't work if the user is a quota group ...) created by
- How to reproduce: 1. Create a group G and assign it some quota 2. …
Mar 28, 2008:
- 2:52 PM Ticket #959 (Users may be duplicated in group member list for quota groups) created by
- How to reproduce: 1. Create two groups, A and B. Assign quota to one …
- 2:42 PM Ticket #958 (Document that the migration program is no longer actively tested or ...) created by
- There is a section about the migration in the docbook documentation.
- 2:41 PM Changeset [4198] by
- References #436: Create extension system for the web application …
Mar 27, 2008:
- 8:56 AM Ticket #957 (Base1PluginExecuter doesn't import plug-in generated BASEfiles as expected) created by
- The first case was a filtering plug-in which caused the raw data links …
- 8:36 AM Ticket #956 (Spot image generation throws NullPointerException if a spot has an X ...) closed by
- fixed: (In [4197]) Fixes #956: Spot image generation throws …
- 8:36 AM Changeset [4197] by
- Fixes #956: Spot image generation throws NullPointerException? if a …
- 8:02 AM Ticket #956 (Spot image generation throws NullPointerException if a spot has an X ...) created by
- Here is the stacktrace (from BASE 2.4.5): […] See also: …
Mar 26, 2008:
- 7:12 PM Ticket #955 (Array slides – make test for barcode uniqueness) created by
- As mentioned in the BASE core specifications enforcing array slide …
- 6:16 PM Ticket #954 (Array slides – Creating array slides using import plugin) created by
- In BASE2, array slides can be created one-by-one or by using the …
Mar 25, 2008:
- 10:01 AM Changeset [4196] by
- Fixes #952: Update MySQL JDBC driver to a newer version
- 10:01 AM Ticket #952 (Update MySQL JDBC driver to a newer version) closed by
- fixed: (In [4196]) Fixes #952: Update MySQL JDBC driver to a newer version
- 9:08 AM Changeset [4195] by
- Merged patch release 2.6.1 to the trunk.
- 9:07 AM ReleaseProcedure edited by
- Corrected merge instructions (diff)
- 9:02 AM ReleaseProcedure edited by
- Updating release procedure (diff)
- 8:50 AM Milestone BASE 2.6.1 completed
- Bug fixes for 2.6. Revision log: log:branches/2.6-stable@4156:4191
- 8:43 AM DownloadPage edited by
- Added 2.6.1 for download (diff)
- 8:31 AM Changeset [4194] by
- Changes for future release 2.6.2
- 8:28 AM Changeset [4193] by
- Tagging version 2.6.1
- 8:10 AM Changeset [4192] by
- Preparing release 2.6.1
Mar 20, 2008:
- 1:29 PM Changeset [4191] by
- Fixes #953: Add 'useServerPrepStmts=true' to db.url setting in …
- 1:29 PM Ticket #953 (Add 'useServerPrepStmts=true' to db.url setting in base.config) closed by
- fixed: (In [4191]) Fixes #953: Add 'useServerPrepStmts=true' to db.url …
- 1:02 PM Changeset [4190] by
- Fixed compilation error.
- 12:51 PM Ticket #953 (Add 'useServerPrepStmts=true' to db.url setting in base.config) created by
- It may be that the lack of this configuration option disables the use …
- 12:48 PM Ticket #952 (Update MySQL JDBC driver to a newer version) created by
- We are currently using 5.0.6. 5.0.8 is available and also 5.1.5. We …
- 12:17 PM Changeset [4189] by
- Deleting obsolete branch
- 12:16 PM Changeset [4188] by
- Deleting obsolete branch
- 12:15 PM Changeset [4187] by
- Merged extensions branch into trunk
- 12:00 PM Changeset [4186] by
- Merged log:trunk#4177:4179 into extensions branch
- 11:57 AM Changeset [4185] by
- References #436: Create extension system for the web application More …
- 11:54 AM Changeset [4184] by
- References #436: Create extension system for the web application …
Mar 19, 2008:
- 1:16 PM Ticket #951 (JarClassLoader.getInstance always creates a new class loader if ...) closed by
- fixed: (In [4183]) Fixes #951: JarClassLoader?.getInstance always creates a …
- 1:16 PM Changeset [4183] by
- Fixes #951: JarClassLoader?.getInstance always creates a new class …
- 12:46 PM Ticket #951 (JarClassLoader.getInstance always creates a new class loader if ...) created by
- The code that checks for a changed JAR file is incorrect and includes …
Mar 18, 2008:
- 7:51 PM Ticket #950 (Exception when setting active project to none) closed by
- duplicate: See #947
- 5:24 PM Ticket #950 (Exception when setting active project to none) created by
- If a user logs in, sets the active project to any project then sets it …
- 2:00 PM Changeset [4182] by
- Added new image
- 1:59 PM Changeset [4181] by
- References #436: Create extension system for the web application Most …
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