Timeline
May 8, 2008:
- 10:33 PM Changeset [4281] by
- Removed potentially dangerous static declaration.
- 4:37 PM Ticket #1017 (Make MedianRatioNormalization to normalize 1-channel data) closed by
- fixed: (In [4280]) Fixes #1017. 1-channel median normalizarion added.
- 4:37 PM Changeset [4280] by
- Fixes #1017. 1-channel median normalizarion added.
- 1:46 PM Changeset [4279] by
- Updating credits.txt before 2.7.0 release.
- 1:00 PM Ticket #773 (Filter reporter table using array design) closed by
- wontfix: This should be possible when #1015 and #1016 becomes fixed. Eg. first …
- 12:57 PM Ticket #1007 (Add reference to the Illumina plugin in BASE doc Appendix B) closed by
- wontfix: I think the existing link is enough.
- 12:52 PM Ticket #933 (Create extension points for some selected places in the web client) closed by
- fixed: Nothing more to do.
- 12:51 PM Ticket #1011 (Select multiple alternatives for a filter with a specified list of options) closed by
- fixed: (In [4278]) Fixes #1011: Select multiple alternatives for a filter …
- 12:51 PM Changeset [4278] by
- Fixes #1011: Select multiple alternatives for a filter with a …
- 12:51 PM Changeset [4277] by
- Fixes #1025: Add Hql.size() expression
- 12:51 PM Ticket #1025 (Add Hql.size() expression) closed by
- fixed: (In [4277]) Fixes #1025: Add Hql.size() expression
- 12:50 PM Ticket #1025 (Add Hql.size() expression) created by
-
This is a HQL expression that creates a
size(collection)expression. … - 11:49 AM Changeset [4276] by
- References #988: Add support for servlets in extensions Fixed …
- 10:48 AM Changeset [4275] by
- References #1011: Allow to select multiple alternatives for a filter …
- 9:39 AM Changeset [4274] by
- References #1021 Correct value is now returned by the pathCanBeUsed-method
- 9:29 AM Ticket #1024 (Allow users to select a specific job-agent when creating a new job) created by
- When job agents are used to execute jobs there is limited way to …
- 9:12 AM Ticket #1023 (Add support for using regular expressions when filtering lists) created by
- This depends on #1022. We could use '~' and '!~' as the operator prefixes.
- 9:09 AM Ticket #1022 (Add support for using regular expressions in queries) created by
- This is not in the SQL standard, but both Postgres and MySQL have an …
- 9:05 AM Changeset [4273] by
- Fixes #1021 Unclosed DbControl?
- 9:05 AM Ticket #1021 (Unclosed DbControler) closed by
- fixed: (In [4273]) Fixes #1021 Unclosed DbControl?
- 8:36 AM Ticket #1021 (Unclosed DbControler) created by
- […]
- 8:30 AM Changeset [4272] by
- Fixes #1018: Make it possible to filter on null at the same time as a …
- 8:30 AM Ticket #1018 (Make it possible to filter on null at the same time as a real value) closed by
- fixed: (In [4272]) Fixes #1018: Make it possible to filter on null at the …
- 8:05 AM Ticket #1018 (Make it possible to filter on null at the same time as a real value) reopened by
- Hmm... something strange has happened... The code that was checked in …
May 7, 2008:
- 11:07 PM Ticket #1020 (A reporter list should hold the number of reporters in it) created by
- I think this would be useful information once #1019 is implemented and …
- 4:41 PM Ticket #1019 (Reporter list manager - Create reporter list using combinations of ...) created by
- Added functionality to manage reporter lists and create new reporter …
- 4:14 PM Ticket #1008 (Error in API doc for class `SpotExtraValueBatcher<I>`) closed by
- fixed: (In [4271]) Fixes #1008 Updated documentation
- 4:14 PM Changeset [4271] by
- Fixes #1008 Updated documentation
- 3:01 PM Changeset [4270] by
- Fixes #1018: Make it possible to filter on null at the same time as a …
- 3:01 PM Ticket #1018 (Make it possible to filter on null at the same time as a real value) closed by
- fixed: (In [4270]) Fixes #1018: Make it possible to filter on null at the …
- 1:38 PM Ticket #1018 (Make it possible to filter on null at the same time as a real value) created by
- In the web client it is possible to filter on two values by giving a …
- 9:26 AM Ticket #1017 (Make MedianRatioNormalization to normalize 1-channel data) created by
- The summary says it all. Remember to change the information on core …
May 6, 2008:
- 7:30 PM Ticket #1016 (Filter table using a reporter list) created by
- For a table that lists reporters/reporter info it would be useful to …
- 7:11 PM Ticket #1015 (Add reporter list from tables that list reporters/reporter info.) created by
- Currently, the functionality to create reporter lists is only …
- 1:51 PM Ticket #954 (Array slides – Creating array slides using import plugin) closed by
- wontfix: This will be probably be implemented as a more generic import plug-in …
- 9:23 AM Changeset [4269] by
- Fixes #1013: Sharing of items to other users and/or groups fails This …
- 9:23 AM Ticket #1013 (Sharing of items to other users and/or groups fails) closed by
- fixed: (In [4269]) Fixes #1013: Sharing of items to other users and/or groups …
- 9:08 AM Ticket #1014 (Issues listing data after removing items) created by
- In some cases listing of spot data fails for me. After deleting …
- 8:47 AM Ticket #1013 (Sharing of items to other users and/or groups fails) created by
- A user with role 'User' cannot share items to other users nor groups. …
- 8:41 AM Ticket #1012 (Information on 'read' access to users needs clarification) created by
- In …
- 8:25 AM Changeset [4268] by
- Minor change in web client doc.
May 5, 2008:
- 10:05 PM Changeset [4267] by
- References #974. Revert accidental renaming of method in [4256]
- 3:02 PM Ticket #964 (Support preset filter list with null/not null values) closed by
- duplicate: Replaced by #1011
- 3:02 PM Ticket #962 (Filtering the list – ”not equal to” operator for selection list options) closed by
- duplicate: Replaced by #1011
- 3:01 PM Ticket #1011 (Select multiple alternatives for a filter with a specified list of options) created by
- This ticket replaces #962 and #964. A property of an item that can …
- 1:24 PM Changeset [4266] by
- Fixes #943: Base1PluginExecuter should import reporterlists
- 1:24 PM Ticket #943 (Base1PluginExecuter should import reporterlists) closed by
- fixed: (In [4266]) Fixes #943: Base1PluginExecuter should import reporterlists
- 9:37 AM Ticket #1001 (Plug-ins that use the 'execute immediately' option can't be aborted) closed by
- fixed: (In [4265]) Fixes #1001: Plug-ins that use the 'execute immediately' …
- 9:37 AM Changeset [4265] by
- Fixes #1001: Plug-ins that use the 'execute immediately' option can't …
- 9:36 AM Ticket #1010 (Display progress reporter for plug-ins that are executing with the ...) created by
- In the current implementation a window with the message `Do not close …
Apr 30, 2008:
- 12:40 PM Changeset [4264] by
- References #436: Create extension system for the web application …
- 12:39 PM Changeset [4263] by
- References #933: Create extension points for some selected places in …
- 9:54 AM Changeset [4262] by
- References #933: Create extension points for some selected places in …
Apr 29, 2008:
- 1:58 PM Ticket #1009 (Link from array design to job that imported the features) closed by
- fixed: (In [4261]) Fixes #1009: Link from array design to job that imported …
- 1:58 PM Changeset [4261] by
- Fixes #1009: Link from array design to job that imported the features
- 1:58 PM Changeset [4260] by
- References #974. Don't display import information for file-only data sets
- 1:47 PM Changeset [4259] by
- References #974. Changed label on 'import date' column
- 1:42 PM Changeset [4258] by
- Fixes #974: Link from raw bioassay to job that imported the raw data
- 1:42 PM Ticket #974 (Link from raw bioassay to job that imported the raw data) closed by
- fixed: (In [4258]) Fixes #974: Link from raw bioassay to job that imported …
- 12:59 PM Changeset [4257] by
- References #1009: Link from array design to job that imported the …
- 11:39 AM Changeset [4256] by
- References #974: Link from raw bioassay to job that imported the raw …
- 8:26 AM Ticket #1009 (Link from array design to job that imported the features) created by
- This is the same thing for array designs as #974 is for raw bioassays
Apr 28, 2008:
- 11:16 PM Ticket #1008 (Error in API doc for class `SpotExtraValueBatcher<I>`) created by
-
In javadoc section for
Class SpotExtraValueBatcher<I>there should … - 8:29 PM Ticket #1007 (Add reference to the Illumina plugin in BASE doc Appendix B) created by
- The listing of core plugins should reference to baseplugins.thep.lu.se …
- 3:44 PM Changeset [4255] by
- Typo.
- 3:00 PM Changeset [4254] by
- Fixes #972: Assign job to experiment when the job is created The …
- 3:00 PM Ticket #972 (Assign job to experiment when the job is created) closed by
- fixed: (In [4254]) Fixes #972: Assign job to experiment when the job is …
- 12:25 PM Changeset [4253] by
- Undo changes made in [4250] to this file. The code was related to …
- 12:19 PM Ticket #1006 (Make it possible to search for missing annotations) closed by
- fixed: (In [4252]) Fixes #1006: Make it possible to search for missing annotations
- 12:19 PM Changeset [4252] by
- Fixes #1006: Make it possible to search for missing annotations
- 10:54 AM Ticket #1006 (Make it possible to search for missing annotations) created by
- There is an issue that manifests itself when filtering lists of items …
- 10:48 AM Changeset [4251] by
- Fixes #965: Filtering the list – selection list vs. input box for …
- 10:48 AM Ticket #965 (Filtering the list – selection list vs. input box for enumeration type ...) closed by
- fixed: (In [4251]) Fixes #965: Filtering the list ?\226?\128?\147 selection …
Apr 25, 2008:
- 3:41 PM Changeset [4250] by
- References #965: Filtering the list – selection list vs. input box for …
Apr 24, 2008:
- 1:30 PM Changeset [4249] by
- Fixes #1005: Test programs should print out server information just …
- 1:30 PM Ticket #1005 (Test programs should print out server information just like the initdb ...) closed by
- fixed: (In [4249]) Fixes #1005: Test programs should print out server …
- 1:08 PM Changeset [4248] by
- Fixes #1004: Upgrade Postgres JDBC driver to 8.3.603
- 1:08 PM Ticket #1004 (Upgrade Postgres JDBC driver to 8.3.603) closed by
- fixed: (In [4248]) Fixes #1004: Upgrade Postgres JDBC driver to 8.3.603
- 1:07 PM Ticket #1005 (Test programs should print out server information just like the initdb ...) created by
- This is very useful to know and make sure that the test programs run …
- 12:55 PM Changeset [4247] by
- Fixes #1003: Illumina raw data importer – Enhance feature mismatch …
- 12:55 PM Ticket #1003 (Illumina raw data importer – Enhance feature mismatch error handling) closed by
- fixed: (In [4247]) Fixes #1003: Illumina raw data importer ?\226?\128?\147 …
- 12:11 PM Ticket #1004 (Upgrade Postgres JDBC driver to 8.3.603) created by
- We currently have 8.2.506. The documentation on their web page …
- 11:39 AM Changeset [4246] by
- Fixes #968: Raw data importer – Enhance feature mismatch error handling
- 11:39 AM Ticket #968 (Raw data importer – Enhance feature mismatch error handling) closed by
- fixed: (In [4246]) Fixes #968: Raw data importer ?\226?\128?\147 Enhance …
- 10:48 AM Ticket #1003 (Illumina raw data importer – Enhance feature mismatch error handling) created by
- Do the same things with this importer as for the flat file raw data …
- 8:00 AM Changeset [4245] by
- Fixes #1002: Possible PermissionDeniedException? when listing …
- 8:00 AM Ticket #1002 (Possible PermissionDeniedException when listing rawbioassay through ...) closed by
- fixed: (In [4245]) Fixes #1002: Possible PermissionDeniedException? when …
- 7:44 AM Ticket #1002 (Possible PermissionDeniedException when listing rawbioassay through ...) created by
- This happens if one of the raw bioassays the user has access to is …
Apr 23, 2008:
- 3:04 PM Changeset [4244] by
- Fixes #993: Paste multiple barcodes in the Multiple slides wizard
- 3:04 PM Ticket #993 (Paste multiple barcodes in the Multiple slides wizard) closed by
- fixed: (In [4244]) Fixes #993: Paste multiple barcodes in the Multiple slides …
- 1:51 PM Changeset [4243] by
- Fixes #920: Add support for aborting queries using a StatlessSession?
- 1:51 PM Ticket #920 (Add support for aborting queries using a StatlessSession) closed by
- fixed: (In [4243]) Fixes #920: Add support for aborting queries using a …
- 1:50 PM Ticket #1001 (Plug-ins that use the 'execute immediately' option can't be aborted) created by
- This is true for all plug-ins even those that implements the …
- 1:44 PM Changeset [4242] by
- Fixes #1000: SimpleExport? count items twice
- 1:44 PM Ticket #1000 (SimpleExport count items twice) closed by
- fixed: (In [4242]) Fixes #1000: SimpleExport? count items twice
- 1:40 PM Ticket #1000 (SimpleExport count items twice) created by
-
The
SimpleExportis the plug-in that is used for all table-like …
Apr 22, 2008:
- 2:07 PM Changeset [4241] by
- Fixes #994: Create GAL export plug-in for array designs
- 2:07 PM Ticket #994 (Create GAL export plug-in for array designs) closed by
- fixed: (In [4241]) Fixes #994: Create GAL export plug-in for array designs
- 2:06 PM Changeset [4240] by
- Fixes #999: PrintMapImporter? should import feature diameter from TAM …
- 2:06 PM Ticket #999 (PrintMapImporter should import feature diameter from TAM and MWBR files) closed by
- fixed: (In [4240]) Fixes #999: PrintMapImporter? should import feature …
- 11:48 AM Changeset [4239] by
- References #994: Create GAL export plug-in for array designs Added …
- 11:36 AM Ticket #999 (PrintMapImporter should import feature diameter from TAM and MWBR files) created by
- We need a new column in the ArrayDesignBlock table for this. The …
Apr 21, 2008:
- 10:50 AM Ticket #989 (Add support for using extension classes in custom JSP pages) closed by
- fixed
- 10:50 AM Ticket #988 (Add support for servlets in extensions) closed by
- fixed
- 10:49 AM Ticket #436 (Create extension system for the web application) closed by
- fixed
- 10:00 AM Changeset [4238] by
- Fixes #998: Decimal numbers may be incorrectly rounded
- 10:00 AM Ticket #998 (Decimal numbers may be incorrectly rounded) closed by
- fixed: (In [4238]) Fixes #998: Decimal numbers may be incorrectly rounded
Apr 19, 2008:
- 3:26 PM Ticket #998 (Decimal numbers may be incorrectly rounded) created by
- Numbers are not sorted correctly. Bioassay, Spots data, Sort Ch1. …
Apr 18, 2008:
- 2:41 PM Ticket #997 (Read and update installation/upgrade instructions) created by
- The installation and upgrade instructions are becoming a bit old. We …
- 2:08 PM Changeset [4237] by
- References #436: Create extension system for the web application …
- 1:06 PM Changeset [4236] by
- References #436: Create extension system for the web application …
- 11:51 AM Changeset [4235] by
- Fixes #996: MEV can't open data files that has a missing value in the …
- 11:51 AM Ticket #996 (MEV can't open data files that has a missing value in the last column) closed by
- fixed: (In [4235]) Fixes #996: MEV can't open data files that has a missing …
- 11:31 AM Ticket #932 (Convert the MeV launcher to an extension) closed by
- fixed: (In [4234]) Fixes #932: Convert the MeV launcher to an extension …
- 11:31 AM Changeset [4234] by
- Fixes #932: Convert the MeV launcher to an extension MEV-related code …
- 11:16 AM Ticket #996 (MEV can't open data files that has a missing value in the last column) created by
- The BioAssaySetExporter? can export data in MEV format. The export …
Apr 17, 2008:
- 3:05 PM Changeset [4233] by
- References #436: Create extension system for the web application …
- 2:25 PM Ticket #995 (Add link to closed tickets for each milestone on DownloadPage) closed by
- fixed
- 2:25 PM DownloadPage edited by
- Fixes #995 (diff)
- 2:06 PM Changeset [4232] by
- Merged patch release 2.6.2 to the trunk. Delta 2.6.2 - 2.6.1
- 1:53 PM Ticket #995 (Add link to closed tickets for each milestone on DownloadPage) created by
- It is a bit difficult to get to know what has been fixed for each …
- 1:38 PM Milestone BASE 2.6.2 completed
- Bug fixes for 2.6.1. Revision log: log:branches/2.6-stable@4191:4230
- 1:37 PM DownloadPage edited by
- Releasing 2.6.2 (diff)
- 1:31 PM Changeset [4231] by
- Changes for future release 2.6.3
- 1:19 PM Changeset [4230] by
- Tagging version 2.6.2
- 1:19 PM Changeset [4229] by
- Preparing release 2.6.2
- 1:18 PM Changeset [4228] by
- References #957: Base1PluginExecuter doesn't import plug-in generated …
- 12:30 PM Tickets #990,991 batch updated by
- fixed: (In [4227]) Fixes #990 and #991: Change default create date... and …
- 12:30 PM Changeset [4227] by
- Fixes #990 and #991: Change default create date... and Created date - …
- 12:17 PM Changeset [4226] by
- Fixes #961: Expand the maximum number of characters accepted by filter …
- 12:17 PM Ticket #961 (Expand the maximum number of characters accepted by filter input box) closed by
- fixed: (In [4226]) Fixes #961: Expand the maximum number of characters …
Apr 16, 2008:
- 8:15 AM Changeset [4225] by
- References #989: Add support for using extension classes in custom JSP …
- 8:02 AM Changeset [4224] by
- References #436: Create extension system for the web application Svn …
Apr 15, 2008:
- 10:09 PM Ticket #927 (Image Macro fails on Feature Trac Page) closed by
- fixed
- 9:59 PM Features edited by
- (diff)
- 8:14 PM Changeset [4223] by
- References #989: Add support for using extension classes in custom JSP …
- 2:24 PM Changeset [4222] by
- References #989: Add support for using extension classes in custom JSP …
- 12:18 PM Ticket #994 (Create GAL export plug-in for array designs) created by
- Add functionality to create/download GAL files from array designs …
- 10:05 AM Ticket #993 (Paste multiple barcodes in the Multiple slides wizard) created by
- In BASE2, multiple array slides can be created using the “Multiple …
Apr 14, 2008:
- 7:29 PM Ticket #957 (Base1PluginExecuter doesn't import plug-in generated BASEfiles as expected) closed by
- fixed: I am closing this now so we can release 2.6.2. New or remaining bugs …
- 7:13 PM Ticket #992 (Regular expressions with backslashes trigger "Not allowed to use ...) closed by
- wontfix: This can't be fixed. A column mapping ends as soon as a \ is …
- 5:34 PM Ticket #992 (Regular expressions with backslashes trigger "Not allowed to use ...) created by
- I have some raw data files with column headings F635 Median and …
- 2:40 PM Changeset [4221] by
- References #988: Add support for servlets in extensions The main …
- 7:53 AM Ticket #955 (Array slides – make test for barcode uniqueness) closed by
- fixed: (In [4220]) Fixes #955: Array slides ?\226?\128?\147 make test for …
- 7:53 AM Changeset [4220] by
- Fixes #955: Array slides – make test for barcode uniqueness
Apr 11, 2008:
- 5:36 PM Ticket #991 (Created date - auto changed from blank when edit sample) created by
- When editing a sample that does not have Creation date defined …
- 5:32 PM Ticket #990 (Change default create date for samples (and other items).) created by
- When adding Samples the Created date is by default set to current …
- 1:57 PM Ticket #986 (Move example code for web services to the BASE plug-ins site) closed by
- fixed
- 1:54 PM Changeset [4219] by
- References #986: Move example code for web services to the BASE …
- 11:49 AM Ticket #898 (Move example code for plug-ins to the BASE plug-ins site) closed by
- fixed
- 11:46 AM DeveloperInformation edited by
- Changed documentation links (diff)
- 11:41 AM DeveloperInformation edited by
- Link to new site for examples (diff)
- 10:58 AM Changeset [4218] by
- References #898: Move example code for plug-ins to the BASE plug-ins …
Apr 10, 2008:
- 9:47 PM Ticket #989 (Add support for using extension classes in custom JSP pages) created by
- An extensions that uses custom JSP pages are currently limited to use …
- 9:31 PM Ticket #988 (Add support for servlets in extensions) created by
- This is "needed" by the MeV launcher. It currently uses the MevExport? …
- 6:07 PM Ticket #987 (NullPointerException in "Test with file" function if no "data header ...) created by
- When using Annotation importer. Input file is small and contains two …
- 2:34 PM Ticket #986 (Move example code for web services to the BASE plug-ins site) created by
- Was part of #898. Better to have this as it's own ticket.
- 2:28 PM Changeset [4217] by
- References #436: Create extension system for the web application …
- 2:23 PM Changeset [4216] by
- Fixes #985: File sizes are not correctly rounded Also fixed so that …
- 2:23 PM Ticket #985 (File sizes are not correctly rounded) closed by
- fixed: (In [4216]) Fixes #985: File sizes are not correctly rounded Also …
- 1:58 PM Ticket #985 (File sizes are not correctly rounded) created by
- I uploaded a file which size is 4050 (~3.995Kb) bytes in size. This is …
- 1:52 PM Changeset [4215] by
- Fixes #984: Bioassays may show up duplicated in list of bioassays The …
- 1:52 PM Ticket #984 (Bioassays may show up duplicated in list of bioassays) closed by
- fixed: (In [4215]) Fixes #984: Bioassays may show up duplicated in list of …
- 1:45 PM Ticket #983 (update.sh script doesn't validate parameters) closed by
- fixed: (In [4214]) Fixes #983: update.sh script doesn't validate parameters
- 1:45 PM Changeset [4214] by
- Fixes #983: update.sh script doesn't validate parameters
- 1:42 PM Changeset [4213] by
- Fixes #980: Items created by jobs are not shared to the active project.
- 1:42 PM Ticket #980 (Items created by jobs are not shared to the active project.) closed by
- fixed: (In [4213]) Fixes #980: Items created by jobs are not shared to the …
- 12:53 PM Changeset [4212] by
- References #957: Base1PluginExecuter doesn't import plug-in generated …
- 12:18 PM Ticket #984 (Bioassays may show up duplicated in list of bioassays) created by
- I am not really sure why this is happening. Sometimes a bioassay …
- 12:09 PM Ticket #983 (update.sh script doesn't validate parameters) created by
- I am following the Illumina plug-in installation recipe and read that …
Apr 9, 2008:
- 4:08 PM Ticket #982 (Wrong destination (for shared to user) from link to directory from ...) created by
- After running a plugin (that creates directories and files and …
- 3:16 PM Ticket #981 (Share all subdirectories and files when sharing a directory) created by
- When sharing a directory, its subdirectories and files are not shared. …
- 3:15 PM Ticket #980 (Items created by jobs are not shared to the active project.) created by
- The user case: When working in an active project I run a plugin in an …
- 2:44 PM Ticket #979 (Biomaterial LIMS) created by
- Enhancing biomaterial management in BASE by adding Biomaterial LIMS …
Apr 8, 2008:
- 2:16 PM Ticket #978 (Unzipped files never inherit file type specified during upload) created by
- There should perhaps be an option to unpack an uploaded zip file …
Note: See TracTimeline
for information about the timeline view.
