Timeline
Jun 26, 2008:
- 8:38 PM Ticket #1070 (Excess memory usage when creating root bioassayset with different ...) created by
- Although the implementation is correct I tag this as a defect since …
- 11:11 AM Ticket #1069 (New mode for Import reporters to reporterlist - Add existing without ...) created by
- When importing reporters to a reporterlist from file (using Reporter …
- 9:51 AM Ticket #1068 (Sorting spotdata on a formula-based column where the formula contains ...) closed by
- fixed: (In [4352]) Fixes #1068: Sorting spotdata on a formula-based column …
- 9:51 AM Changeset [4352] by
- Fixes #1068: Sorting spotdata on a formula-based column where the …
- 9:32 AM Ticket #1068 (Sorting spotdata on a formula-based column where the formula contains ...) created by
- […]
- 9:30 AM Ticket #1065 (Can't display spot-data columns that are based on formulas returning ...) closed by
- duplicate: I think the fix in #1067 is better. * Using CAST in the SQL will …
- 9:25 AM Changeset [4351] by
- Fixes #1067: Can't display spot-data columns that are based on …
- 9:25 AM Ticket #1067 (Can't display spot-data columns that are based on formulas returning ...) closed by
- fixed: (In [4351]) Fixes #1067: Can't display spot-data columns that are …
Jun 25, 2008:
- 3:42 PM Ticket #1067 (Can't display spot-data columns that are based on formulas returning ...) created by
- This is the same problem as in ticket #1065. I have been investigating …
- 12:28 PM Ticket #1066 (Reset all filters functionality request) created by
- In some cases filtering of list views and inclusion of columns to list …
- 10:54 AM Ticket #1065 (Can't display spot-data columns that are based on formulas returning ...) created by
- See also #1067. I was looking at spot data and with a few columns …
- 9:57 AM Ticket #1064 (Add support for dry-run to the plug-in system) created by
- There is a wish in ticket #1028 that it should be possible to run a …
Jun 24, 2008:
- 3:00 PM Changeset [4350] by
- Fixes #1062.
- 3:00 PM Ticket #1062 (Add information about Illumina plugin to platform section in doc) closed by
- fixed: (In [4350]) Fixes #1062.
Jun 23, 2008:
- 9:32 PM Ticket #1063 (Read doc/src/docbook/overviewdoc/features.xml) created by
- Was: Add information about supported microarray platforms to web site …
- 9:28 PM Ticket #1062 (Add information about Illumina plugin to platform section in doc) created by
- 2:43 PM Changeset [4349] by
- References #1037: Add 'id' column to all list pages Fixed incorrect …
- 8:07 AM Ticket #1060 (Bug? - Overview plots fail after BASE 2.7.1 update) closed by
- invalid: I don't think this has anything to do with the 2.7.1 update. It is …
- 7:56 AM Ticket #1061 (Error: Run plugin: Formula intensity calculator) closed by
-
invalid: You need to give the
base2@myserver.eduuser access to the dynamic …
Jun 19, 2008:
- 11:37 PM Ticket #1061 (Error: Run plugin: Formula intensity calculator) created by
- When attempting to run this plugin, I get this MySQL error: CREATE …
- 4:34 PM Ticket #1060 (Bug? - Overview plots fail after BASE 2.7.1 update) created by
- After updating to BASE 2.7.1 (Lund onk installation) overview plots …
Jun 18, 2008:
- 2:43 PM Changeset [4348] by
- References #1038: Provide manual parameter for 'spotsize' in GAL …
- 2:19 PM Changeset [4347] by
- Merged patch release 2.7.1 to the trunk
- 2:06 PM Milestone BASE 2.7.1 completed
- Bug fixes for 2.7. Revision log: log:branches/2.7-stable@4296:4345
- 2:06 PM DownloadPage edited by
- Releasing 2.7.1 (diff)
- 2:02 PM Changeset [4346] by
- Changes for future release 2.7.2
- 1:48 PM Changeset [4345] by
- Tagging version 2.7.1
- 1:47 PM Changeset [4344] by
- Preparing release 2.7.1
Jun 17, 2008:
- 11:36 PM Ticket #1059 (JasperException: Unable to find setter method for attribute: direction ...) created by
- I'm attempting to use BASE 2.6.3. I only have Tomcat5 available, and …
- 2:54 PM Changeset [4343] by
- References #1010
- 2:53 PM Changeset [4342] by
- Fixes #1010
- 2:53 PM Ticket #1010 (Display progress reporter for plug-ins that are executing with the ...) closed by
- fixed: (In [4342]) Fixes #1010
- 2:06 PM Ticket #1056 (Disk usage does not seem to report disk usage properly for experiments) closed by
- fixed: (In [4341]) Fixes #1056: Disk usage does not seem to report disk usage …
- 2:06 PM Changeset [4341] by
- Fixes #1056: Disk usage does not seem to report disk usage properly …
- 1:14 PM Changeset [4340] by
- Fixes #1054: Make it possible for the annotation importer to identify …
- 1:14 PM Ticket #1054 (Make it possible for the annotation importer to identify items by ...) closed by
- fixed: (In [4340]) Fixes #1054: Make it possible for the annotation importer …
- 1:12 PM Ticket #1010 (Display progress reporter for plug-ins that are executing with the ...) reopened by
- The progress reporter does not finish, instead it hangs even if the …
- 1:02 PM Ticket #1058 (Metadata.getPropertyValue() fails to get value for the 'id' property) closed by
- fixed: (In [4339]) Fixes #1058: Metadata.getPropertyValue() fails to get …
- 1:02 PM Changeset [4339] by
- Fixes #1058: Metadata.getPropertyValue() fails to get value for the …
- 1:02 PM Ticket #1058 (Metadata.getPropertyValue() fails to get value for the 'id' property) created by
-
This makes it impossible to export the
idvalue from data tables … - 11:20 AM Ticket #1050 (Add core support for storing analysed data in files instead of in the ...) closed by
- fixed: Seems to be working ok.
- 11:19 AM Ticket #1051 (Add support in the GUI for accssing files used to store analysed data) closed by
- fixed: (In [4338]) Fixes #1051: Add support in the GUI for accssing files …
- 11:19 AM Changeset [4338] by
- Fixes #1051: Add support in the GUI for accssing files used to store …
- 11:01 AM Changeset [4337] by
- Fixes #1052: Core analysis plug-ins need to be aware of bioassaysets …
- 11:01 AM Ticket #1052 (Core analysis plug-ins need to be aware of bioassaysets that use data ...) closed by
- fixed: (In [4337]) Fixes #1052: Core analysis plug-ins need to be aware of …
- 9:51 AM Ticket #1049 (Add the 'quadratic mean' to available Avg. method's for formulas.) closed by
- fixed: (In [4336]) Fixes #1049 Add the 'quadratic mean' to available Avg. …
- 9:51 AM Changeset [4336] by
- Fixes #1049 Add the 'quadratic mean' to available Avg. method's for …
- 9:26 AM Changeset [4335] by
- References #1050: Add core support for storing analysed data in files …
- 8:01 AM Changeset [4334] by
- References #1050: Add core support for storing analysed data in files …
Jun 16, 2008:
- 8:09 PM Ticket #1057 (Make it possible to access and change web service options on client side) created by
- The current implementation of the client-side of the web services …
- 9:49 AM Ticket #1037 (Add 'id' column to all list pages) closed by
- fixed: (In [4333]) Fixes #1037 Add 'id' column to all list pages
- 9:49 AM Changeset [4333] by
- Fixes #1037 Add 'id' column to all list pages
Jun 12, 2008:
- 11:22 AM Changeset [4332] by
- References #1037 Most of the list pages can now show an item's ID.
Jun 11, 2008:
- 5:16 PM Ticket #1056 (Disk usage does not seem to report disk usage properly for experiments) created by
- Defect? Experiments in BASE2 with lots of bioassaysets (and …
- 2:47 PM Ticket #1055 (Messaging system) created by
- The messaging system should allow users with proper credential to send …
- 9:12 AM Changeset [4331] by
- References #1037 The most important list pages are done.
Jun 10, 2008:
- 3:59 PM Ticket #1010 (Display progress reporter for plug-ins that are executing with the ...) closed by
- fixed: (In [4330]) Fixes #1010 Display progress reporter for plug-ins that …
- 3:59 PM Changeset [4330] by
- Fixes #1010 Display progress reporter for plug-ins that are executing …
Jun 5, 2008:
- 2:45 PM Ticket #1054 (Make it possible for the annotation importer to identify items by ...) created by
- The current implementation only supports 'name' or 'externalId' as …
- 8:12 AM Ticket #1048 (Plugin configuration wizard display/parse incorrectly (when ...) closed by
- wontfix: I have found what you are talking about. The issue here is that when …
- 8:01 AM Changeset [4329] by
- Fixes #1047: Type.BOOLEAN.parseString() doesn't convert strings as expected
- 8:01 AM Ticket #1047 (Type.BOOLEAN.parseString() doesn't convert strings as expected) closed by
- fixed: (In [4329]) Fixes #1047: Type.BOOLEAN.parseString() doesn't convert …
- 7:58 AM Changeset [4328] by
- Fixes #1053: Values.getBoolean() is case-sensitive
- 7:58 AM Ticket #1053 (Values.getBoolean() is case-sensitive) closed by
- fixed: (In [4328]) Fixes #1053: Values.getBoolean() is case-sensitive
- 7:55 AM Ticket #1053 (Values.getBoolean() is case-sensitive) created by
- Trying to convert string values to boolean. Using lowercase strings, …
Jun 4, 2008:
- 1:35 PM Ticket #1052 (Core analysis plug-ins need to be aware of bioassaysets that use data ...) created by
- This is related to #1029 and depends on #1050. All existing core …
- 1:29 PM Ticket #1051 (Add support in the GUI for accssing files used to store analysed data) created by
- This is related to to #1029 and depends on #1050. The first thing is …
- 1:22 PM Ticket #1050 (Add core support for storing analysed data in files instead of in the ...) created by
- This is related to #1029, but is only about changes needed in the core …
- 11:45 AM Ticket #1049 (Add the 'quadratic mean' to available Avg. method's for formulas.) created by
- http://en.wikipedia.org/wiki/Quadratic_mean
- 10:56 AM Ticket #1048 (Plugin configuration wizard display/parse incorrectly (when ...) created by
- When testing with file (parsing file) the rows above defined data …
- 10:08 AM Ticket #1047 (Type.BOOLEAN.parseString() doesn't convert strings as expected) created by
- When importing Raw data (type = Agilent), data from the file is mapped …
Jun 3, 2008:
- 4:14 PM Changeset [4327] by
- References #1010 Using the SimpleProgressReporter? to get progress of …
- 3:07 PM Changeset [4326] by
- Fixes #1045. References #1016.
- 3:07 PM Ticket #1045 (File list view creates an exception) closed by
- fixed: (In [4326]) Fixes #1045. References #1016.
- 2:00 PM Ticket #1046 (Remember closed/expanded node status in the hierarchical tree of ...) created by
- Currently, closed nodes in the hierarchical tree of Bioassay sets (in …
- 11:25 AM Changeset [4325] by
- Fixes #1038: Provide manual parameter for 'spotsize' in GAL exporter
- 11:25 AM Ticket #1038 (Provide manual parameter for 'spotsize' in GAL exporter) closed by
- fixed: (In [4325]) Fixes #1038: Provide manual parameter for 'spotsize' in …
- 11:07 AM Ticket #1045 (File list view creates an exception) created by
- When I try to view my files as ordinary user I get the below …
- 10:58 AM Changeset [4324] by
- Fixes #532.
- 10:58 AM Ticket #532 (Read "Jobs" section) closed by
- fixed: (In [4324]) Fixes #532.
- 9:41 AM Ticket #1036 (Implement 'service' extension point) closed by
- fixed: Seems to be working fine right now.
Jun 2, 2008:
- 1:11 PM Ticket #1044 (MeV launch returns a 'jsp' extension not a 'jnlp') closed by
- worksforme: It is a browser-related problem.
- 12:22 PM Ticket #1044 (MeV launch returns a 'jsp' extension not a 'jnlp') created by
- I am not sure if this should be in this ticket system or baseplugins …
May 30, 2008:
- 12:06 PM Changeset [4323] by
- Fixes #1043: JarClassLoader?.getInstance() doesn't create a new class …
- 12:06 PM Ticket #1043 (JarClassLoader.getInstance() doesn't create a new class loader if a ...) closed by
- fixed: (In [4323]) Fixes #1043: JarClassLoader?.getInstance() doesn't create a …
- 11:22 AM Ticket #1043 (JarClassLoader.getInstance() doesn't create a new class loader if a ...) created by
- The documentation on the method says that a new class loader should be …
- 11:15 AM Changeset [4322] by
- Fixes #1042: Improve error handling in the extensions system
- 11:15 AM Ticket #1042 (Improve error handling in the extensions system) closed by
- fixed: (In [4322]) Fixes #1042: Improve error handling in the extensions system
- 10:58 AM Ticket #1042 (Improve error handling in the extensions system) created by
- The extensions system contains code like the example below in several …
May 29, 2008:
- 3:02 PM Ticket #1041 (ZipException: error in opening zip file in JarClassLoader if a JAR ...) closed by
- fixed: (In [4321]) Fixes #1041: ZipException?: error in opening zip file in …
- 3:02 PM Changeset [4321] by
- Fixes #1041: ZipException?: error in opening zip file in JarClassLoader? …
- 2:43 PM Ticket #1041 (ZipException: error in opening zip file in JarClassLoader if a JAR ...) created by
- Here is the interesting parts of the stacktrace: […] The starting …
- 1:39 PM Changeset [4320] by
- References #1036: Implement 'service' extension point Now it is ready …
- 11:38 AM Changeset [4319] by
- Fixes #1040: Exceptions when stopping Tomcat
- 11:38 AM Ticket #1040 (Exceptions when stopping Tomcat) closed by
- fixed: (In [4319]) Fixes #1040: Exceptions when stopping Tomcat
- 11:11 AM Ticket #1040 (Exceptions when stopping Tomcat) created by
- This has been around for a long time... When stopping Tomcat using the …
May 28, 2008:
- 8:21 PM Ticket #408 (Implement FTP server) closed by
- invalid: Moved to http://baseplugins.thep.lu.se/wiki/net.sf.basedb.ftp
- 8:01 AM Ticket #1039 (link to list of plugins is broken) closed by
- fixed: The link is fixed
- 8:00 AM WikiStart edited by
- Repaired a broken link (diff)
- 12:15 AM Ticket #1039 (link to list of plugins is broken) created by
- Link on first page core plug-ins with sample configuration files …
May 27, 2008:
- 12:21 PM Ticket #1038 (Provide manual parameter for 'spotsize' in GAL exporter) created by
- Since the 'spotsize' column wasn't added until BASE 2.7 (#999), many …
- 11:55 AM Ticket #1037 (Add 'id' column to all list pages) created by
- The internal ID of items is not visible anywhere in the web interface. …
- 10:16 AM Ticket #639 (exportPureMatrix method) closed by
- fixed: changeset:4318 adds functionality to export 2-channel data. ch1/ch2 …
- 10:08 AM Changeset [4318] by
- Addresses #639. Exporting plain matrix for 1 and 2 channel data.
- 9:36 AM Ticket #1036 (Implement 'service' extension point) created by
- It could be useful to have an extension point that can be used for …
- 8:44 AM Changeset [4317] by
- Fixes #1022: Add support for using regular expressions in queries
- 8:44 AM Ticket #1022 (Add support for using regular expressions in queries) closed by
- fixed: (In [4317]) Fixes #1022: Add support for using regular expressions in …
- 8:17 AM Changeset [4316] by
- Removed obsolete/stray code.
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