Timeline
Jul 2, 2008:
- 10:36 PM Ticket #1078 (Copyright in 'About' BASE should contain year 2008) created by
- 4:30 PM Milestone BASE 2.7.2 completed
- Bug fixes for 2.7.1. Revision log: log:branches/2.7-stable@4345:4369
- 4:29 PM DownloadPage edited by
- Releasing 2.7.2 (diff)
- 4:22 PM Changeset [4370] by
- Changes for the future release 2.7.3
- 3:55 PM Changeset [4369] by
- Tagging version 2.7.2
- 3:54 PM Changeset [4368] by
- Preparing release 2.7.2
- 3:51 PM Changeset [4367] by
- Fixes #1077. Changed help text on step parameter, also changed default …
- 3:51 PM Ticket #1077 (Lowess normalization broken) closed by
- fixed: (In [4367]) Fixes #1077. Changed help text on step parameter, also …
- 1:23 PM Changeset [4366] by
- References #1028: Plug-in for batch upload/modification of items …
- 10:33 AM Changeset [4365] by
- Minor changes to text.
- 9:04 AM Changeset [4364] by
- References #1077: Lowess normalization broken Added warning in update …
- 8:56 AM Changeset [4363] by
- Addresses #1077. A couple of more issues found. Further quality …
- 8:47 AM Ticket #1077 (Lowess normalization broken) reopened by
Jul 1, 2008:
- 4:30 PM Changeset [4362] by
- Fixes #1074.
- 4:30 PM Ticket #1074 (Base1PluginExecuter: BASE1 text field parameter is not working properly) closed by
- fixed: (In [4362]) Fixes #1074.
- 1:43 PM Changeset [4361] by
- References #1077: Lowess normalization broken Added script for …
- 11:59 AM Changeset [4360] by
- Fixes #1077.
- 11:59 AM Ticket #1077 (Lowess normalization broken) closed by
- fixed: (In [4360]) Fixes #1077.
- 11:40 AM Changeset [4359] by
- Fixes #1076: Backwards incompatible change in MedianRatioNormalization? …
- 11:40 AM Ticket #1076 (Backwards incompatible change in MedianRatioNormalization plugin) closed by
- fixed: (In [4359]) Fixes #1076: Backwards incompatible change in …
- 11:10 AM Ticket #1077 (Lowess normalization broken) created by
- This problem affects all versions of BASE2. As pointed out in the …
- 11:08 AM Changeset [4358] by
- Fixes #1075: Lowess normaliztion fails on trunk but works on latest …
- 11:08 AM Ticket #1075 (Lowess normalization fails on trunk but works on latest 2.7-stable) closed by
- fixed: (In [4358]) Fixes #1075: Lowess normaliztion fails on trunk but works …
- 9:19 AM Ticket #1076 (Backwards incompatible change in MedianRatioNormalization plugin) created by
- The fix to #1030 which was included in the 2.7.1 release, removed the …
Jun 30, 2008:
- 10:51 PM Ticket #1075 (Lowess normalization fails on trunk but works on latest 2.7-stable) created by
- Running trunk version lowess on my development machine creates the …
- 7:31 PM Ticket #1074 (Base1PluginExecuter: BASE1 text field parameter is not working properly) created by
- Text field parameters in BASE1 are treated specially in that they are …
- 2:48 PM Changeset [4357] by
- References #1072: Core plug-in versions should follow BASE versions …
- 2:47 PM Ticket #1072 (Core plug-in versions should follow BASE versions) closed by
- fixed: (In [4356]) Fixes #1072: Core plug-in versions should follow BASE versions
- 2:47 PM Changeset [4356] by
- Fixes #1072: Core plug-in versions should follow BASE versions
- 2:32 PM Ticket #1073 (Store current plug-in version when running a job) closed by
- fixed: (In [4355]) Fixes #1073: Store current plug-in version when running a job
- 2:32 PM Changeset [4355] by
- Fixes #1073: Store current plug-in version when running a job
- 11:10 AM Ticket #1073 (Store current plug-in version when running a job) created by
- It may be useful to know the version number of a plug-in that was used …
- 11:06 AM Ticket #1072 (Core plug-in versions should follow BASE versions) created by
- The version number of the core plug-ins as reported by the …
- 8:41 AM Changeset [4354] by
- Fixes #1070: Excess memory usage when creating root bioassayset with …
- 8:41 AM Ticket #1070 (Excess memory usage when creating root bioassayset with different ...) closed by
- fixed: (In [4354]) Fixes #1070: Excess memory usage when creating root …
Jun 27, 2008:
- 2:45 PM Ticket #1071 (Help text for default configuration selection for Base1PluginExecuter ...) created by
- Selecting the Base1PluginExecuter as plug-in to run will show the …
- 2:34 PM Changeset [4353] by
- References #1070: Excess memory usage when creating root bioassayset …
Jun 26, 2008:
- 8:38 PM Ticket #1070 (Excess memory usage when creating root bioassayset with different ...) created by
- Although the implementation is correct I tag this as a defect since …
- 11:11 AM Ticket #1069 (New mode for Import reporters to reporterlist - Add existing without ...) created by
- When importing reporters to a reporterlist from file (using Reporter …
- 9:51 AM Ticket #1068 (Sorting spotdata on a formula-based column where the formula contains ...) closed by
- fixed: (In [4352]) Fixes #1068: Sorting spotdata on a formula-based column …
- 9:51 AM Changeset [4352] by
- Fixes #1068: Sorting spotdata on a formula-based column where the …
- 9:32 AM Ticket #1068 (Sorting spotdata on a formula-based column where the formula contains ...) created by
- […]
- 9:30 AM Ticket #1065 (Can't display spot-data columns that are based on formulas returning ...) closed by
- duplicate: I think the fix in #1067 is better. * Using CAST in the SQL will …
- 9:25 AM Changeset [4351] by
- Fixes #1067: Can't display spot-data columns that are based on …
- 9:25 AM Ticket #1067 (Can't display spot-data columns that are based on formulas returning ...) closed by
- fixed: (In [4351]) Fixes #1067: Can't display spot-data columns that are …
Jun 25, 2008:
- 3:42 PM Ticket #1067 (Can't display spot-data columns that are based on formulas returning ...) created by
- This is the same problem as in ticket #1065. I have been investigating …
- 12:28 PM Ticket #1066 (Reset all filters functionality request) created by
- In some cases filtering of list views and inclusion of columns to list …
- 10:54 AM Ticket #1065 (Can't display spot-data columns that are based on formulas returning ...) created by
- See also #1067. I was looking at spot data and with a few columns …
- 9:57 AM Ticket #1064 (Add support for dry-run to the plug-in system) created by
- There is a wish in ticket #1028 that it should be possible to run a …
Jun 24, 2008:
- 3:00 PM Changeset [4350] by
- Fixes #1062.
- 3:00 PM Ticket #1062 (Add information about Illumina plugin to platform section in doc) closed by
- fixed: (In [4350]) Fixes #1062.
Jun 23, 2008:
- 9:32 PM Ticket #1063 (Read doc/src/docbook/overviewdoc/features.xml) created by
- Was: Add information about supported microarray platforms to web site …
- 9:28 PM Ticket #1062 (Add information about Illumina plugin to platform section in doc) created by
- 2:43 PM Changeset [4349] by
- References #1037: Add 'id' column to all list pages Fixed incorrect …
- 8:07 AM Ticket #1060 (Bug? - Overview plots fail after BASE 2.7.1 update) closed by
- invalid: I don't think this has anything to do with the 2.7.1 update. It is …
- 7:56 AM Ticket #1061 (Error: Run plugin: Formula intensity calculator) closed by
-
invalid: You need to give the
base2@myserver.eduuser access to the dynamic …
Jun 19, 2008:
- 11:37 PM Ticket #1061 (Error: Run plugin: Formula intensity calculator) created by
- When attempting to run this plugin, I get this MySQL error: CREATE …
- 4:34 PM Ticket #1060 (Bug? - Overview plots fail after BASE 2.7.1 update) created by
- After updating to BASE 2.7.1 (Lund onk installation) overview plots …
Jun 18, 2008:
- 2:43 PM Changeset [4348] by
- References #1038: Provide manual parameter for 'spotsize' in GAL …
- 2:19 PM Changeset [4347] by
- Merged patch release 2.7.1 to the trunk
- 2:06 PM Milestone BASE 2.7.1 completed
- Bug fixes for 2.7. Revision log: log:branches/2.7-stable@4296:4345
- 2:06 PM DownloadPage edited by
- Releasing 2.7.1 (diff)
- 2:02 PM Changeset [4346] by
- Changes for future release 2.7.2
- 1:48 PM Changeset [4345] by
- Tagging version 2.7.1
- 1:47 PM Changeset [4344] by
- Preparing release 2.7.1
Jun 17, 2008:
- 11:36 PM Ticket #1059 (JasperException: Unable to find setter method for attribute: direction ...) created by
- I'm attempting to use BASE 2.6.3. I only have Tomcat5 available, and …
- 2:54 PM Changeset [4343] by
- References #1010
- 2:53 PM Changeset [4342] by
- Fixes #1010
- 2:53 PM Ticket #1010 (Display progress reporter for plug-ins that are executing with the ...) closed by
- fixed: (In [4342]) Fixes #1010
- 2:06 PM Ticket #1056 (Disk usage does not seem to report disk usage properly for experiments) closed by
- fixed: (In [4341]) Fixes #1056: Disk usage does not seem to report disk usage …
- 2:06 PM Changeset [4341] by
- Fixes #1056: Disk usage does not seem to report disk usage properly …
- 1:14 PM Changeset [4340] by
- Fixes #1054: Make it possible for the annotation importer to identify …
- 1:14 PM Ticket #1054 (Make it possible for the annotation importer to identify items by ...) closed by
- fixed: (In [4340]) Fixes #1054: Make it possible for the annotation importer …
- 1:12 PM Ticket #1010 (Display progress reporter for plug-ins that are executing with the ...) reopened by
- The progress reporter does not finish, instead it hangs even if the …
- 1:02 PM Ticket #1058 (Metadata.getPropertyValue() fails to get value for the 'id' property) closed by
- fixed: (In [4339]) Fixes #1058: Metadata.getPropertyValue() fails to get …
- 1:02 PM Changeset [4339] by
- Fixes #1058: Metadata.getPropertyValue() fails to get value for the …
- 1:02 PM Ticket #1058 (Metadata.getPropertyValue() fails to get value for the 'id' property) created by
-
This makes it impossible to export the
idvalue from data tables … - 11:20 AM Ticket #1050 (Add core support for storing analysed data in files instead of in the ...) closed by
- fixed: Seems to be working ok.
- 11:19 AM Ticket #1051 (Add support in the GUI for accssing files used to store analysed data) closed by
- fixed: (In [4338]) Fixes #1051: Add support in the GUI for accssing files …
- 11:19 AM Changeset [4338] by
- Fixes #1051: Add support in the GUI for accssing files used to store …
- 11:01 AM Changeset [4337] by
- Fixes #1052: Core analysis plug-ins need to be aware of bioassaysets …
- 11:01 AM Ticket #1052 (Core analysis plug-ins need to be aware of bioassaysets that use data ...) closed by
- fixed: (In [4337]) Fixes #1052: Core analysis plug-ins need to be aware of …
- 9:51 AM Ticket #1049 (Add the 'quadratic mean' to available Avg. method's for formulas.) closed by
- fixed: (In [4336]) Fixes #1049 Add the 'quadratic mean' to available Avg. …
- 9:51 AM Changeset [4336] by
- Fixes #1049 Add the 'quadratic mean' to available Avg. method's for …
- 9:26 AM Changeset [4335] by
- References #1050: Add core support for storing analysed data in files …
- 8:01 AM Changeset [4334] by
- References #1050: Add core support for storing analysed data in files …
Jun 16, 2008:
- 8:09 PM Ticket #1057 (Make it possible to access and change web service options on client side) created by
- The current implementation of the client-side of the web services …
- 9:49 AM Ticket #1037 (Add 'id' column to all list pages) closed by
- fixed: (In [4333]) Fixes #1037 Add 'id' column to all list pages
- 9:49 AM Changeset [4333] by
- Fixes #1037 Add 'id' column to all list pages
Jun 12, 2008:
- 11:22 AM Changeset [4332] by
- References #1037 Most of the list pages can now show an item's ID.
Jun 11, 2008:
- 5:16 PM Ticket #1056 (Disk usage does not seem to report disk usage properly for experiments) created by
- Defect? Experiments in BASE2 with lots of bioassaysets (and …
- 2:47 PM Ticket #1055 (Messaging system) created by
- The messaging system should allow users with proper credential to send …
- 9:12 AM Changeset [4331] by
- References #1037 The most important list pages are done.
Jun 10, 2008:
- 3:59 PM Ticket #1010 (Display progress reporter for plug-ins that are executing with the ...) closed by
- fixed: (In [4330]) Fixes #1010 Display progress reporter for plug-ins that …
- 3:59 PM Changeset [4330] by
- Fixes #1010 Display progress reporter for plug-ins that are executing …
Jun 5, 2008:
- 2:45 PM Ticket #1054 (Make it possible for the annotation importer to identify items by ...) created by
- The current implementation only supports 'name' or 'externalId' as …
- 8:12 AM Ticket #1048 (Plugin configuration wizard display/parse incorrectly (when ...) closed by
- wontfix: I have found what you are talking about. The issue here is that when …
- 8:01 AM Changeset [4329] by
- Fixes #1047: Type.BOOLEAN.parseString() doesn't convert strings as expected
- 8:01 AM Ticket #1047 (Type.BOOLEAN.parseString() doesn't convert strings as expected) closed by
- fixed: (In [4329]) Fixes #1047: Type.BOOLEAN.parseString() doesn't convert …
- 7:58 AM Changeset [4328] by
- Fixes #1053: Values.getBoolean() is case-sensitive
- 7:58 AM Ticket #1053 (Values.getBoolean() is case-sensitive) closed by
- fixed: (In [4328]) Fixes #1053: Values.getBoolean() is case-sensitive
- 7:55 AM Ticket #1053 (Values.getBoolean() is case-sensitive) created by
- Trying to convert string values to boolean. Using lowercase strings, …
Jun 4, 2008:
- 1:35 PM Ticket #1052 (Core analysis plug-ins need to be aware of bioassaysets that use data ...) created by
- This is related to #1029 and depends on #1050. All existing core …
- 1:29 PM Ticket #1051 (Add support in the GUI for accssing files used to store analysed data) created by
- This is related to to #1029 and depends on #1050. The first thing is …
- 1:22 PM Ticket #1050 (Add core support for storing analysed data in files instead of in the ...) created by
- This is related to #1029, but is only about changes needed in the core …
- 11:45 AM Ticket #1049 (Add the 'quadratic mean' to available Avg. method's for formulas.) created by
- http://en.wikipedia.org/wiki/Quadratic_mean
- 10:56 AM Ticket #1048 (Plugin configuration wizard display/parse incorrectly (when ...) created by
- When testing with file (parsing file) the rows above defined data …
- 10:08 AM Ticket #1047 (Type.BOOLEAN.parseString() doesn't convert strings as expected) created by
- When importing Raw data (type = Agilent), data from the file is mapped …
Jun 3, 2008:
- 4:14 PM Changeset [4327] by
- References #1010 Using the SimpleProgressReporter? to get progress of …
- 3:07 PM Changeset [4326] by
- Fixes #1045. References #1016.
- 3:07 PM Ticket #1045 (File list view creates an exception) closed by
- fixed: (In [4326]) Fixes #1045. References #1016.
- 2:00 PM Ticket #1046 (Remember closed/expanded node status in the hierarchical tree of ...) created by
- Currently, closed nodes in the hierarchical tree of Bioassay sets (in …
- 11:25 AM Changeset [4325] by
- Fixes #1038: Provide manual parameter for 'spotsize' in GAL exporter
- 11:25 AM Ticket #1038 (Provide manual parameter for 'spotsize' in GAL exporter) closed by
- fixed: (In [4325]) Fixes #1038: Provide manual parameter for 'spotsize' in …
- 11:07 AM Ticket #1045 (File list view creates an exception) created by
- When I try to view my files as ordinary user I get the below …
- 10:58 AM Changeset [4324] by
- Fixes #532.
- 10:58 AM Ticket #532 (Read "Jobs" section) closed by
- fixed: (In [4324]) Fixes #532.
- 9:41 AM Ticket #1036 (Implement 'service' extension point) closed by
- fixed: Seems to be working fine right now.
Jun 2, 2008:
- 1:11 PM Ticket #1044 (MeV launch returns a 'jsp' extension not a 'jnlp') closed by
- worksforme: It is a browser-related problem.
- 12:22 PM Ticket #1044 (MeV launch returns a 'jsp' extension not a 'jnlp') created by
- I am not sure if this should be in this ticket system or baseplugins …
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