Timeline



Oct 15, 2008:

4:40 PM Changeset [4587] by Martin Svensson
References #1136 Change to fit all jsp-pages, including files, and …
3:14 PM Changeset [4586] by Nicklas Nordborg
This directory was added in [4574] by accident.
3:13 PM Changeset [4585] by Nicklas Nordborg
Merged patch release 2.8.3 to the trunk.
2:10 PM Milestone BASE 2.8.3 completed
Revision Log: log:branches/2.8-stable@4535:4583
2:10 PM DownloadPage edited by Nicklas Nordborg
Releasing BASE 2.8.3 (diff)
2:05 PM Changeset [4584] by Nicklas Nordborg
Changes for future release 2.8.4
1:44 PM Changeset [4583] by Nicklas Nordborg
Tagging version 2.8.3
1:43 PM Changeset [4582] by Nicklas Nordborg
Preparing release 2.8.3
1:41 PM Changeset [4581] by Nicklas Nordborg
Fixes #1144: Test program for Base1PluginExecuter doesn't report a failure
1:41 PM Ticket #1144 (Test program for Base1PluginExecuter doesn't report a failure) closed by Nicklas Nordborg
fixed: (In [4581]) Fixes #1144: Test program for Base1PluginExecuter doesn't …
1:40 PM Ticket #1144 (Test program for Base1PluginExecuter doesn't report a failure) created by Nicklas Nordborg
I was running the test program on Windows which of course fails …
1:34 PM Changeset [4580] by Nicklas Nordborg
References #1131: Permission problems creating a new directory in a …
1:10 PM Ticket #1143 (Problems with file browser and Internet Explorer) closed by Nicklas Nordborg
fixed: I have now verified the fix.

Oct 14, 2008:

9:46 AM Changeset [4579] by Nicklas Nordborg
References #1143: Problems with file browser and Internet Explorer I …
8:59 AM Ticket #1143 (Problems with file browser and Internet Explorer) created by Nicklas Nordborg
We have been experiencing some intermittent and strange problems with …

Oct 13, 2008:

4:38 PM Changeset [4578] by Martin Svensson
References #1136 Updated most of the index-, view- and list-jsp pages …
11:38 AM Changeset [4577] by Nicklas Nordborg
References #792: Add support for units to annotation values Make it …
11:04 AM Ticket #1122 (News item sort order should be controllable) closed by Nicklas Nordborg
fixed: (In [4576]) Fixes #1122: News item sort order should be controllable
11:04 AM Changeset [4576] by Nicklas Nordborg
Fixes #1122: News item sort order should be controllable
10:57 AM Changeset [4575] by Nicklas Nordborg
Fixes #1121: News item 'BASE Server installed' is created after …
10:57 AM Ticket #1121 (News item 'BASE Server installed' is created after running updatedb) closed by Nicklas Nordborg
fixed: (In [4575]) Fixes #1121: News item 'BASE Server installed' is created …
9:52 AM Ticket #1142 (Batch importer plug-ins should handle lack of USE permission better) created by Nicklas Nordborg
The current implementation of the batch importer simply ignores all …
9:43 AM Changeset [4574] by Nicklas Nordborg
Fixes #1137: Importing hybridizations fail when association is tried …
9:43 AM Ticket #1137 (Importing hybridizations fail when association is tried to a slide ...) closed by Nicklas Nordborg
fixed: (In [4574]) Fixes #1137: Importing hybridizations fail when …

Oct 10, 2008:

4:37 PM Changeset [4573] by Martin Svensson
References #1136 Added ownership-jsppages and also started to updated …
12:17 PM Ticket #1138 (SMART option for feature mismatch in rawbioassay import does not work) closed by Nicklas Nordborg
invalid: It is more or less impossible to delete the entries since there are …

Oct 9, 2008:

2:56 PM Ticket #1141 (Spelling error for "Disk usage") closed by Nicklas Nordborg
fixed: (In [4572]) Fixes #1141: Spelling error for "Disk usage"
2:56 PM Changeset [4572] by Nicklas Nordborg
Fixes #1141: Spelling error for "Disk usage"
2:47 PM Ticket #1141 (Spelling error for "Disk usage") created by Nicklas Nordborg
It is spelled "Disc usage" in several places, for example in the role …
2:36 PM Changeset [4571] by Nicklas Nordborg
Fixes #1140: Unclosed DbControl?
2:36 PM Ticket #1140 (Unclosed dbcontrol) closed by Nicklas Nordborg
fixed: (In [4571]) Fixes #1140: Unclosed DbControl?
12:40 PM Ticket #1140 (Unclosed dbcontrol) created by Martin Svensson
[…]
10:00 AM Ticket #1139 (Display the barcode for array slide in the hybridization information page) created by Jari Häkkinen
Currently the slide name is displayed on the hybridization information …
9:56 AM Ticket #1138 (SMART option for feature mismatch in rawbioassay import does not work) created by Jari Häkkinen
We have problems with the SMART option for feature mismatch error …
9:23 AM Ticket #1137 (Importing hybridizations fail when association is tried to a slide ...) created by Jari Häkkinen
Hybs and slides have a 1-to-1 relation so the problem is expected. …

Oct 8, 2008:

2:35 PM Ticket #1125 (Replace existing file in file upload) closed by Martin Svensson
fixed: (In [4570]) Fixes #1125 Replace existing file in file upload
2:35 PM Changeset [4570] by Martin Svensson
Fixes #1125 Replace existing file in file upload
10:20 AM Ticket #1136 (Give away/set owner of items) created by Jari Häkkinen
In ticket:348 take ownership was added to BASE, why is set ownership …
9:18 AM Changeset [4569] by Nicklas Nordborg
Fixes #1134: Raw bioassays are available for inclusion in root …
9:18 AM Ticket #1134 (Raw bioassays are available for inclusion in root bioassay creation ...) closed by Nicklas Nordborg
fixed: (In [4569]) Fixes #1134: Raw bioassays are available for inclusion in …

Oct 7, 2008:

3:54 PM Changeset [4568] by Martin Svensson
Fixes #1105 Automatically set "array design" on raw bioassay that has …
3:54 PM Ticket #1105 (Automatically set "array design" on raw bioassay that has link via ...) closed by Martin Svensson
fixed: (In [4568]) Fixes #1105 Automatically set "array design" on raw …
2:18 PM Ticket #1135 (Create plug-in for importing raw data to multiple raw bioassays in one go) created by Jari Häkkinen
The batch importers now support creation of items down to RawBioAssay …
2:13 PM Changeset [4567] by Nicklas Nordborg
Fixes #1113 and #1114: "Broadcast to currently active BASE users" and …
2:13 PM Tickets #1113,​1114 batch updated by Nicklas Nordborg
fixed: (In [4567]) Fixes #1113 and #1114: "Broadcast to currently active BASE …
1:50 PM Ticket #1134 (Raw bioassays are available for inclusion in root bioassay creation ...) created by Jari Häkkinen
Creating a new root bioassay from raw bioassays in some cases fail …
11:37 AM Changeset [4566] by Nicklas Nordborg
References #792: Add support for units to annotation values Added …
10:44 AM Ticket #1133 (Experimental factors - inherit annotations) created by base
I have in BASE2 created a new annotation at the Biosource level. When …
9:58 AM Changeset [4565] by Nicklas Nordborg
References #792: Add support for units to annotation values Added …
9:57 AM Ticket #1104 (Automatically set "number of arrays" on hybridization that has link to ...) closed by Martin Svensson
fixed: (In [4564]) Fixes #1104 Automatically set "number of arrays" on …
9:57 AM Changeset [4564] by Martin Svensson
Fixes #1104 Automatically set "number of arrays" on hybridization that …
9:12 AM Changeset [4563] by Martin Svensson
References #1104, Updating the 'number of arrays'-field when an …

Oct 6, 2008:

2:10 PM Changeset [4562] by Nicklas Nordborg
References #792: Add support for units to annotation values Added …
11:18 AM Changeset [4561] by Nicklas Nordborg
References #792: Add support for units to annotation values Updated …
11:14 AM WikiStart edited by Nicklas Nordborg
Removed links to trunk versions since there is no published trunk … (diff)
9:27 AM DeveloperInformation edited by Nicklas Nordborg
Removed links to trunk versions since there is no published trunk … (diff)
9:22 AM Changeset [4560] by Nicklas Nordborg
References #792: Add support for units to annotation values All list …

Oct 3, 2008:

4:23 PM Changeset [4559] by Martin Svensson
Fixes #1092 Add listing of child items that are the same type as the parent
4:23 PM Ticket #1092 (Add listing of child items that are the same type as the parent) closed by Martin Svensson
fixed: (In [4559]) Fixes #1092 Add listing of child items that are the same …
2:26 PM Changeset [4558] by Nicklas Nordborg
References #792: Add support for units to annotation values Added …
12:28 PM Changeset [4557] by Nicklas Nordborg
References #792: Add support for units to annotation values Made …
10:56 AM Changeset [4556] by Nicklas Nordborg
References #792: Add support for units to annotation values …

Oct 2, 2008:

1:55 PM Changeset [4555] by Nicklas Nordborg
References #792: Add support for units to annotation values Made it …

Oct 1, 2008:

2:00 PM Ticket #1131 (Permission problems creating a new directory in a shared directory) closed by Nicklas Nordborg
fixed: (In [4554]) Fixes #1131: Permission problems creating a new directory …
2:00 PM Changeset [4554] by Nicklas Nordborg
Fixes #1131: Permission problems creating a new directory in a shared …
12:47 PM Changeset [4553] by Nicklas Nordborg
Fixes #1132: Plug-ins fail to create sub-directory when "auto-share" …
12:47 PM Ticket #1132 (Plug-ins fail to create sub-directory when "auto-share" functionality ...) closed by Nicklas Nordborg
fixed: (In [4553]) Fixes #1132: Plug-ins fail to create sub-directory when …
12:09 PM Ticket #1132 (Plug-ins fail to create sub-directory when "auto-share" functionality ...) created by Nicklas Nordborg
Here is an example stacktrace from the ZipFileUnpacker? plug-in. …

Sep 30, 2008:

11:33 AM Ticket #1131 (Permission problems creating a new directory in a shared directory) created by Jari Häkkinen
On our BASE production server running 2.8.2 we have a problem running …

Sep 29, 2008:

11:41 AM Changeset [4552] by Nicklas Nordborg
References #792: Add support for units to annotation values Added …
9:49 AM Ticket #1130 (Batch importer looks may mix lookup for scanners and print robots) closed by Nicklas Nordborg
fixed: (In [4550]) Fixes #1130: Batch importer may mix lookup for scanners …
9:47 AM Changeset [4551] by Nicklas Nordborg
Fixes #1127: Batch import: Problem importing labeled extracts - …
9:47 AM Ticket #1127 (Batch import: Problem importing labeled extracts - Duplicate protocol) closed by Nicklas Nordborg
fixed: (In [4551]) Fixes #1127: Batch import: Problem importing labeled …
9:12 AM Changeset [4550] by Nicklas Nordborg
Fixes #1030: Batch importer may mix lookup for scanners and print robots
8:42 AM Ticket #1130 (Batch importer looks may mix lookup for scanners and print robots) created by Nicklas Nordborg
The same template query is used for both scanners and print robots. …

Sep 26, 2008:

2:52 PM Changeset [4549] by Nicklas Nordborg
References #792: Add support for units to annotation values Added …
2:29 PM Changeset [4548] by Nicklas Nordborg
References #792: Add support for units to annotation values …
11:41 AM Ticket #1129 (Filtering of child/parent items in table listing) created by Jari Häkkinen
In many cases it would be nice to be able to filter on child or parent …
11:03 AM Changeset [4547] by Nicklas Nordborg
References #792: Add support for units to annotation values * Added …

Sep 25, 2008:

5:28 PM DocBookSupport edited by Jari Häkkinen
Added link to on-line version of the sample sheet. (diff)
5:23 PM Ticket #1128 (Export of child items) created by base
Export of items does not allow selection of child items. I think that …
5:16 PM Ticket #1127 (Batch import: Problem importing labeled extracts - Duplicate protocol) created by base
I tried to import labeled extracts with a protocol connected (protocol …
2:35 PM Changeset [4546] by Nicklas Nordborg
References #792: Add support for units to annotation values Add …
2:13 PM Changeset [4545] by Nicklas Nordborg
References #792: Add support for units to annotation values * Change …
9:01 AM Changeset [4544] by Nicklas Nordborg
References #792: Add support for units to annotation values * Made …

Sep 24, 2008:

11:11 AM Features edited by Jari Häkkinen
Changed info on migration from BASE 1.2 to latest BASE. (diff)

Sep 22, 2008:

2:43 PM Changeset [4543] by Nicklas Nordborg
References #792: Add support for units to annotation values Added web …
9:19 AM Changeset [4542] by Nicklas Nordborg
References #792: Add support for units to annotation values Add …
8:50 AM Changeset [4541] by Nicklas Nordborg
References #792: Add support for units to annotation values Major …

Sep 21, 2008:

4:03 PM reporter_map_importer_genepix.xml attached to DocBookSupport by Jari Häkkinen
4:02 PM reporter_importer_genepix.xml attached to DocBookSupport by Jari Häkkinen
4:01 PM reporter_importer_affymetrix2.xml attached to DocBookSupport by Jari Häkkinen
4:01 PM reporter_importer_affymetrix.xml attached to DocBookSupport by Jari Häkkinen
4:01 PM reporter_importer_384wells.xml attached to DocBookSupport by Jari Häkkinen
4:00 PM reporter_importer_96wells.xml attached to DocBookSupport by Jari Häkkinen
4:00 PM raw_data_importer_genepix-cy5_cy3.xml attached to DocBookSupport by Jari Häkkinen
4:00 PM raw_data_importer_genepix-cy3_cy5.xml attached to DocBookSupport by Jari Häkkinen
3:59 PM plate_importer_384wells.xml attached to DocBookSupport by Jari Häkkinen
3:59 PM plate_importer_96wells.xml attached to DocBookSupport by Jari Häkkinen

Sep 19, 2008:

7:51 AM Ticket #1126 (Illegal charset exception when I try to import new BASE1 configuration) closed by Nicklas Nordborg
duplicate: Part of #425.
7:50 AM Changeset [4540] by Nicklas Nordborg
References #425, #1126. Now sets character set correctly when file upload.

Sep 18, 2008:

5:16 PM Changeset [4539] by Martin Svensson
References #1092 Two of three biomaterials are updated and …
3:10 PM Ticket #1126 (Illegal charset exception when I try to import new BASE1 configuration) created by Jari Häkkinen
During upload of the configuration I do not select a charset ... …
1:42 PM Changeset [4538] by Nicklas Nordborg
References #792: Add support for units to annotation values First …
11:23 AM Changeset [4537] by Nicklas Nordborg
Merged patch release 2.8.2 to the trunk
11:08 AM Milestone BASE 2.8.2 completed
Revision Log: log:branches/2.8-stable@4500:4535
11:07 AM Ticket #1124 (Base1PluginExecuter fails to import lines with empty fields) closed by Nicklas Nordborg
fixed
11:07 AM DownloadPage edited by Nicklas Nordborg
Releasing 2.8.2 (diff)
11:03 AM Changeset [4536] by Nicklas Nordborg
Changes for future release 2.8.3
10:42 AM Changeset [4535] by Nicklas Nordborg
Tagging version 2.8.2
9:00 AM Changeset [4534] by Nicklas Nordborg
Preparing release 2.8.2
8:55 AM Ticket #1125 (Replace existing file in file upload) created by Nicklas Nordborg
Add option to allow replacing an existing file in "Upload new file" dialog.
8:44 AM Ticket #1112 (Create new items with project default properties from active project) closed by Nicklas Nordborg
fixed: (In [4533]) Fixes #1112: Create new items with project default …
8:44 AM Changeset [4533] by Nicklas Nordborg
Fixes #1112: Create new items with project default properties from …

Sep 17, 2008:

2:36 PM Changeset [4532] by Nicklas Nordborg
Reverting changes from [4529] to avoid conflicts when merging 2.8.2 …
2:27 PM Changeset [4531] by Nicklas Nordborg
References #1124: Base1PluginExecuter fails to import lines with empty …
12:51 PM Ticket #1110 (Update documentation links on Wiki and in docbook-text) closed by Martin Svensson
fixed: The links on the wiki pages will be updated as soon as 2.8.2 is released.
12:48 PM Ticket #1111 (Samples list page "new extract" (+) button popup says "new sample") closed by Martin Svensson
fixed
12:38 PM Ticket #1118 (Change problematic forms to use POST instead of GET) closed by Nicklas Nordborg
fixed: Closing this so we can release 2.8.2. Open a new ticket if more forms …
9:28 AM Ticket #1124 (Base1PluginExecuter fails to import lines with empty fields) reopened by Nicklas Nordborg
There is also a similar problem with extra values being skipped if …
9:22 AM Ticket #1124 (Base1PluginExecuter fails to import lines with empty fields) closed by Nicklas Nordborg
fixed: (In [4530]) Fixes #1124: Base1PluginExecuter fails to import lines …
9:22 AM Changeset [4530] by Nicklas Nordborg
Fixes #1124: Base1PluginExecuter fails to import lines with empty fields
8:58 AM Changeset [4529] by Jari Häkkinen
Addresses #1124. The index counter was not updated properly for number …
8:52 AM Ticket #1112 (Create new items with project default properties from active project) reopened by Nicklas Nordborg
See #1123.
8:52 AM Ticket #1123 (BioAssaySetExporter should request 'r' for reading Projects) closed by Nicklas Nordborg
invalid: Seems like a side-effect of a bad implementation of #1112.
8:38 AM Ticket #1124 (Base1PluginExecuter fails to import lines with empty fields) created by Jari Häkkinen
I have problems importing BASEFiles that are a mix of serial and …

Sep 16, 2008:

7:42 PM Ticket #1123 (BioAssaySetExporter should request 'r' for reading Projects) created by Jari Häkkinen
I am running rev 4527 on trunk. Setting use permission to yes will …
4:29 PM Changeset [4528] by Martin Svensson
References #1111 Changed two misleading tooltips. Could not find any …
12:58 PM Changeset [4527] by Nicklas Nordborg
Fixes #1112: Create new items with project default properties from …
12:58 PM Ticket #1112 (Create new items with project default properties from active project) closed by Nicklas Nordborg
fixed: (In [4527]) Fixes #1112: Create new items with project default …
8:41 AM Ticket #425 (Store the character encoding for text files) closed by Nicklas Nordborg
fixed
8:39 AM Changeset [4526] by Nicklas Nordborg
References #425: Store the character encoding for text files Updated …
8:31 AM Changeset [4525] by Nicklas Nordborg
References #425: Store the character encoding for text files Adding …

Sep 15, 2008:

1:34 PM Ticket #1122 (News item sort order should be controllable) created by Jari Häkkinen
The order of the news items in the 'home' listing follows date …
1:28 PM Ticket #1121 (News item 'BASE Server installed' is created after running updatedb) created by Jari Häkkinen
I get the message […] after upgrading from 2.7 to 2.8 (and even …
11:44 AM Changeset [4524] by Nicklas Nordborg
References #425: Store the character encoding for text files Document …
11:18 AM Changeset [4523] by Nicklas Nordborg
References #425: Store the character encoding for text files Export …
9:41 AM Changeset [4522] by Nicklas Nordborg
References #425: Store the character encoding for text files Added …
9:40 AM Changeset [4521] by Nicklas Nordborg
References #425: Store the character encoding for text files "Test …
8:31 AM Changeset [4520] by Nicklas Nordborg
References #425: Store the character encoding for text files Fixed in …
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