Timeline



Oct 17, 2008:

9:18 AM Ticket #1150 (Incorrect mapping of BASE1/BASE2 differences by Base1PluginExecuter) created by Nicklas Nordborg
As an example if a BASE1-plugin asks for 'geneSymbol' the generated …

Oct 16, 2008:

10:06 PM Ticket #1149 (Mark related items for removal when "parent" item is marked for removal) created by Jari Häkkinen
When a transformation is deleted in the analysis view the created …
9:57 PM Ticket #1148 (Removing items from trashcan when circular references exists ...) created by Jari Häkkinen
is probably not easy. However, when an item is blocked by another item …
9:48 PM Ticket #1147 (Incorrect result from isUsed() method prevents deletion of some items) created by Jari Häkkinen
The trashcan view shows the dependency icon for the item but clicking …
9:26 PM Changeset [4590] by Jari Häkkinen
Fixed typo.
1:23 PM Ticket #1146 (updateindexes.sh should create indexes for foreign keys) closed by Nicklas Nordborg
fixed: (In [4589]) Fixes #1146: updateindexes.sh should create indexes for …
1:23 PM Changeset [4589] by Nicklas Nordborg
Fixes #1146: updateindexes.sh should create indexes for foreign keys
12:13 PM Changeset [4588] by Martin Svensson
Fixes #1136 Give away/set owner of items
12:13 PM Ticket #1136 (Give away/set owner of items) closed by Martin Svensson
fixed: (In [4588]) Fixes #1136 Give away/set owner of items
11:25 AM Ticket #1146 (updateindexes.sh should create indexes for foreign keys) created by Nicklas Nordborg
MySQL automatically generates an index on all foreign key columns, but …
8:31 AM Ticket #1145 (Make the generic raw data importer support batch import) created by Nicklas Nordborg
This ticket replaces #1135. The multi-import feature should be …

Oct 15, 2008:

4:40 PM Changeset [4587] by Martin Svensson
References #1136 Change to fit all jsp-pages, including files, and …
3:14 PM Changeset [4586] by Nicklas Nordborg
This directory was added in [4574] by accident.
3:13 PM Changeset [4585] by Nicklas Nordborg
Merged patch release 2.8.3 to the trunk.
2:10 PM Milestone BASE 2.8.3 completed
Revision Log: log:branches/2.8-stable@4535:4583
2:10 PM DownloadPage edited by Nicklas Nordborg
Releasing BASE 2.8.3 (diff)
2:05 PM Changeset [4584] by Nicklas Nordborg
Changes for future release 2.8.4
1:44 PM Changeset [4583] by Nicklas Nordborg
Tagging version 2.8.3
1:43 PM Changeset [4582] by Nicklas Nordborg
Preparing release 2.8.3
1:41 PM Changeset [4581] by Nicklas Nordborg
Fixes #1144: Test program for Base1PluginExecuter doesn't report a failure
1:41 PM Ticket #1144 (Test program for Base1PluginExecuter doesn't report a failure) closed by Nicklas Nordborg
fixed: (In [4581]) Fixes #1144: Test program for Base1PluginExecuter doesn't …
1:40 PM Ticket #1144 (Test program for Base1PluginExecuter doesn't report a failure) created by Nicklas Nordborg
I was running the test program on Windows which of course fails …
1:34 PM Changeset [4580] by Nicklas Nordborg
References #1131: Permission problems creating a new directory in a …
1:10 PM Ticket #1143 (Problems with file browser and Internet Explorer) closed by Nicklas Nordborg
fixed: I have now verified the fix.

Oct 14, 2008:

9:46 AM Changeset [4579] by Nicklas Nordborg
References #1143: Problems with file browser and Internet Explorer I …
8:59 AM Ticket #1143 (Problems with file browser and Internet Explorer) created by Nicklas Nordborg
We have been experiencing some intermittent and strange problems with …

Oct 13, 2008:

4:38 PM Changeset [4578] by Martin Svensson
References #1136 Updated most of the index-, view- and list-jsp pages …
11:38 AM Changeset [4577] by Nicklas Nordborg
References #792: Add support for units to annotation values Make it …
11:04 AM Ticket #1122 (News item sort order should be controllable) closed by Nicklas Nordborg
fixed: (In [4576]) Fixes #1122: News item sort order should be controllable
11:04 AM Changeset [4576] by Nicklas Nordborg
Fixes #1122: News item sort order should be controllable
10:57 AM Changeset [4575] by Nicklas Nordborg
Fixes #1121: News item 'BASE Server installed' is created after …
10:57 AM Ticket #1121 (News item 'BASE Server installed' is created after running updatedb) closed by Nicklas Nordborg
fixed: (In [4575]) Fixes #1121: News item 'BASE Server installed' is created …
9:52 AM Ticket #1142 (Batch importer plug-ins should handle lack of USE permission better) created by Nicklas Nordborg
The current implementation of the batch importer simply ignores all …
9:43 AM Changeset [4574] by Nicklas Nordborg
Fixes #1137: Importing hybridizations fail when association is tried …
9:43 AM Ticket #1137 (Importing hybridizations fail when association is tried to a slide ...) closed by Nicklas Nordborg
fixed: (In [4574]) Fixes #1137: Importing hybridizations fail when …

Oct 10, 2008:

4:37 PM Changeset [4573] by Martin Svensson
References #1136 Added ownership-jsppages and also started to updated …
12:17 PM Ticket #1138 (SMART option for feature mismatch in rawbioassay import does not work) closed by Nicklas Nordborg
invalid: It is more or less impossible to delete the entries since there are …

Oct 9, 2008:

2:56 PM Ticket #1141 (Spelling error for "Disk usage") closed by Nicklas Nordborg
fixed: (In [4572]) Fixes #1141: Spelling error for "Disk usage"
2:56 PM Changeset [4572] by Nicklas Nordborg
Fixes #1141: Spelling error for "Disk usage"
2:47 PM Ticket #1141 (Spelling error for "Disk usage") created by Nicklas Nordborg
It is spelled "Disc usage" in several places, for example in the role …
2:36 PM Changeset [4571] by Nicklas Nordborg
Fixes #1140: Unclosed DbControl?
2:36 PM Ticket #1140 (Unclosed dbcontrol) closed by Nicklas Nordborg
fixed: (In [4571]) Fixes #1140: Unclosed DbControl?
12:40 PM Ticket #1140 (Unclosed dbcontrol) created by Martin Svensson
[…]
10:00 AM Ticket #1139 (Display the barcode for array slide in the hybridization information page) created by Jari Häkkinen
Currently the slide name is displayed on the hybridization information …
9:56 AM Ticket #1138 (SMART option for feature mismatch in rawbioassay import does not work) created by Jari Häkkinen
We have problems with the SMART option for feature mismatch error …
9:23 AM Ticket #1137 (Importing hybridizations fail when association is tried to a slide ...) created by Jari Häkkinen
Hybs and slides have a 1-to-1 relation so the problem is expected. …

Oct 8, 2008:

2:35 PM Ticket #1125 (Replace existing file in file upload) closed by Martin Svensson
fixed: (In [4570]) Fixes #1125 Replace existing file in file upload
2:35 PM Changeset [4570] by Martin Svensson
Fixes #1125 Replace existing file in file upload
10:20 AM Ticket #1136 (Give away/set owner of items) created by Jari Häkkinen
In ticket:348 take ownership was added to BASE, why is set ownership …
9:18 AM Changeset [4569] by Nicklas Nordborg
Fixes #1134: Raw bioassays are available for inclusion in root …
9:18 AM Ticket #1134 (Raw bioassays are available for inclusion in root bioassay creation ...) closed by Nicklas Nordborg
fixed: (In [4569]) Fixes #1134: Raw bioassays are available for inclusion in …

Oct 7, 2008:

3:54 PM Changeset [4568] by Martin Svensson
Fixes #1105 Automatically set "array design" on raw bioassay that has …
3:54 PM Ticket #1105 (Automatically set "array design" on raw bioassay that has link via ...) closed by Martin Svensson
fixed: (In [4568]) Fixes #1105 Automatically set "array design" on raw …
2:18 PM Ticket #1135 (Create plug-in for importing raw data to multiple raw bioassays in one go) created by Jari Häkkinen
The batch importers now support creation of items down to RawBioAssay …
2:13 PM Changeset [4567] by Nicklas Nordborg
Fixes #1113 and #1114: "Broadcast to currently active BASE users" and …
2:13 PM Tickets #1113,​1114 batch updated by Nicklas Nordborg
fixed: (In [4567]) Fixes #1113 and #1114: "Broadcast to currently active BASE …
1:50 PM Ticket #1134 (Raw bioassays are available for inclusion in root bioassay creation ...) created by Jari Häkkinen
Creating a new root bioassay from raw bioassays in some cases fail …
11:37 AM Changeset [4566] by Nicklas Nordborg
References #792: Add support for units to annotation values Added …
10:44 AM Ticket #1133 (Experimental factors - inherit annotations) created by base
I have in BASE2 created a new annotation at the Biosource level. When …
9:58 AM Changeset [4565] by Nicklas Nordborg
References #792: Add support for units to annotation values Added …
9:57 AM Ticket #1104 (Automatically set "number of arrays" on hybridization that has link to ...) closed by Martin Svensson
fixed: (In [4564]) Fixes #1104 Automatically set "number of arrays" on …
9:57 AM Changeset [4564] by Martin Svensson
Fixes #1104 Automatically set "number of arrays" on hybridization that …
9:12 AM Changeset [4563] by Martin Svensson
References #1104, Updating the 'number of arrays'-field when an …

Oct 6, 2008:

2:10 PM Changeset [4562] by Nicklas Nordborg
References #792: Add support for units to annotation values Added …
11:18 AM Changeset [4561] by Nicklas Nordborg
References #792: Add support for units to annotation values Updated …
11:14 AM WikiStart edited by Nicklas Nordborg
Removed links to trunk versions since there is no published trunk … (diff)
9:27 AM DeveloperInformation edited by Nicklas Nordborg
Removed links to trunk versions since there is no published trunk … (diff)
9:22 AM Changeset [4560] by Nicklas Nordborg
References #792: Add support for units to annotation values All list …

Oct 3, 2008:

4:23 PM Changeset [4559] by Martin Svensson
Fixes #1092 Add listing of child items that are the same type as the parent
4:23 PM Ticket #1092 (Add listing of child items that are the same type as the parent) closed by Martin Svensson
fixed: (In [4559]) Fixes #1092 Add listing of child items that are the same …
2:26 PM Changeset [4558] by Nicklas Nordborg
References #792: Add support for units to annotation values Added …
12:28 PM Changeset [4557] by Nicklas Nordborg
References #792: Add support for units to annotation values Made …
10:56 AM Changeset [4556] by Nicklas Nordborg
References #792: Add support for units to annotation values …

Oct 2, 2008:

1:55 PM Changeset [4555] by Nicklas Nordborg
References #792: Add support for units to annotation values Made it …

Oct 1, 2008:

2:00 PM Ticket #1131 (Permission problems creating a new directory in a shared directory) closed by Nicklas Nordborg
fixed: (In [4554]) Fixes #1131: Permission problems creating a new directory …
2:00 PM Changeset [4554] by Nicklas Nordborg
Fixes #1131: Permission problems creating a new directory in a shared …
12:47 PM Changeset [4553] by Nicklas Nordborg
Fixes #1132: Plug-ins fail to create sub-directory when "auto-share" …
12:47 PM Ticket #1132 (Plug-ins fail to create sub-directory when "auto-share" functionality ...) closed by Nicklas Nordborg
fixed: (In [4553]) Fixes #1132: Plug-ins fail to create sub-directory when …
12:09 PM Ticket #1132 (Plug-ins fail to create sub-directory when "auto-share" functionality ...) created by Nicklas Nordborg
Here is an example stacktrace from the ZipFileUnpacker? plug-in. …

Sep 30, 2008:

11:33 AM Ticket #1131 (Permission problems creating a new directory in a shared directory) created by Jari Häkkinen
On our BASE production server running 2.8.2 we have a problem running …

Sep 29, 2008:

11:41 AM Changeset [4552] by Nicklas Nordborg
References #792: Add support for units to annotation values Added …
9:49 AM Ticket #1130 (Batch importer looks may mix lookup for scanners and print robots) closed by Nicklas Nordborg
fixed: (In [4550]) Fixes #1130: Batch importer may mix lookup for scanners …
9:47 AM Changeset [4551] by Nicklas Nordborg
Fixes #1127: Batch import: Problem importing labeled extracts - …
9:47 AM Ticket #1127 (Batch import: Problem importing labeled extracts - Duplicate protocol) closed by Nicklas Nordborg
fixed: (In [4551]) Fixes #1127: Batch import: Problem importing labeled …
9:12 AM Changeset [4550] by Nicklas Nordborg
Fixes #1030: Batch importer may mix lookup for scanners and print robots
8:42 AM Ticket #1130 (Batch importer looks may mix lookup for scanners and print robots) created by Nicklas Nordborg
The same template query is used for both scanners and print robots. …

Sep 26, 2008:

2:52 PM Changeset [4549] by Nicklas Nordborg
References #792: Add support for units to annotation values Added …
2:29 PM Changeset [4548] by Nicklas Nordborg
References #792: Add support for units to annotation values …
11:41 AM Ticket #1129 (Filtering of child/parent items in table listing) created by Jari Häkkinen
In many cases it would be nice to be able to filter on child or parent …
11:03 AM Changeset [4547] by Nicklas Nordborg
References #792: Add support for units to annotation values * Added …

Sep 25, 2008:

5:28 PM DocBookSupport edited by Jari Häkkinen
Added link to on-line version of the sample sheet. (diff)
5:23 PM Ticket #1128 (Export of child items) created by base
Export of items does not allow selection of child items. I think that …
5:16 PM Ticket #1127 (Batch import: Problem importing labeled extracts - Duplicate protocol) created by base
I tried to import labeled extracts with a protocol connected (protocol …
2:35 PM Changeset [4546] by Nicklas Nordborg
References #792: Add support for units to annotation values Add …
2:13 PM Changeset [4545] by Nicklas Nordborg
References #792: Add support for units to annotation values * Change …
9:01 AM Changeset [4544] by Nicklas Nordborg
References #792: Add support for units to annotation values * Made …

Sep 24, 2008:

11:11 AM Features edited by Jari Häkkinen
Changed info on migration from BASE 1.2 to latest BASE. (diff)

Sep 22, 2008:

2:43 PM Changeset [4543] by Nicklas Nordborg
References #792: Add support for units to annotation values Added web …
9:19 AM Changeset [4542] by Nicklas Nordborg
References #792: Add support for units to annotation values Add …
8:50 AM Changeset [4541] by Nicklas Nordborg
References #792: Add support for units to annotation values Major …

Sep 21, 2008:

4:03 PM reporter_map_importer_genepix.xml attached to DocBookSupport by Jari Häkkinen
4:02 PM reporter_importer_genepix.xml attached to DocBookSupport by Jari Häkkinen
4:01 PM reporter_importer_affymetrix2.xml attached to DocBookSupport by Jari Häkkinen
4:01 PM reporter_importer_affymetrix.xml attached to DocBookSupport by Jari Häkkinen
4:01 PM reporter_importer_384wells.xml attached to DocBookSupport by Jari Häkkinen
4:00 PM reporter_importer_96wells.xml attached to DocBookSupport by Jari Häkkinen
4:00 PM raw_data_importer_genepix-cy5_cy3.xml attached to DocBookSupport by Jari Häkkinen
4:00 PM raw_data_importer_genepix-cy3_cy5.xml attached to DocBookSupport by Jari Häkkinen
3:59 PM plate_importer_384wells.xml attached to DocBookSupport by Jari Häkkinen
3:59 PM plate_importer_96wells.xml attached to DocBookSupport by Jari Häkkinen

Sep 19, 2008:

7:51 AM Ticket #1126 (Illegal charset exception when I try to import new BASE1 configuration) closed by Nicklas Nordborg
duplicate: Part of #425.
7:50 AM Changeset [4540] by Nicklas Nordborg
References #425, #1126. Now sets character set correctly when file upload.
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