Timeline
Mar 26, 2009:
- 4:11 PM Ticket #1279 (Mark directories for removal when "parent" item is marked for removal) created by
- Related to ticket:1149 Some plug-ins create directories and files …
- 2:08 PM Ticket #1276 (Edit annotationtype - Moving unit from 'do not use' to 'Use units' ...) closed by
- fixed: (In [4854]) Fixes #1276 Edit annotationtype - Moving unit from 'do not …
- 2:08 PM Changeset [4854] by
- Fixes #1276 Edit annotationtype - Moving unit from 'do not use' to …
- 1:19 PM Changeset [4853] by
- Fixes #1278: Bioplate single-item page has a left-over toolbar button
- 1:19 PM Ticket #1278 (Bioplate single-item page has a left-over toolbar button) closed by
- fixed: (In [4853]) Fixes #1278: Bioplate single-item page has a left-over …
- 1:17 PM Ticket #1278 (Bioplate single-item page has a left-over toolbar button) created by
- The button "Bioplate act" doesn't do anything and should be removed.
- 1:16 PM Ticket #1277 (Export button on Biowells list page leads to non-existing url) closed by
- fixed: (In [4852]) Fixes #1277: Export button on Biowells list page leads to …
- 1:16 PM Changeset [4852] by
- Fixes #1277: Export button on Biowells list page leads to non-existing …
- 1:07 PM Ticket #1277 (Export button on Biowells list page leads to non-existing url) created by
- 1. Navigate to a Bioplate and select the Biowells tab. 2. Click on …
- 12:58 PM Changeset [4851] by
- Remove debug output.
- 10:53 AM Changeset [4850] by
- References #1240: Implement "lazy loading" in the generic "item …
- 10:50 AM Changeset [4849] by
- References #1240: Implement "lazy loading" in the generic "item …
- 9:52 AM Ticket #1276 (Edit annotationtype - Moving unit from 'do not use' to 'Use units' ...) created by
- Error message is: Object doesn't support this property or method
- 9:12 AM Ticket #1275 (Item overview doesn't load array slide associated with hybridization ...) closed by
- fixed: (In [4848]) Fixes #1275: Item overview doesn't load array slide …
- 9:12 AM Changeset [4848] by
- Fixes #1275: Item overview doesn't load array slide associated with …
- 9:07 AM Ticket #1275 (Item overview doesn't load array slide associated with hybridization ...) created by
- I think it has to do with the check of the parent item type, which in …
- 9:07 AM Changeset [4847] by
- References #1240. Do not use lazy-icons in the item-tree when a node's …
- 8:07 AM Ticket #1274 (Disable/hide "Validate" and "Extract metadata" options on the "Data ...) created by
- On the "Data files" tab in the edit dialog of raw bioassays and array …
- 8:02 AM Ticket #1273 (Make it easier to develop plug-ins and extensions as a single package) created by
- This is not so streamlined at the moment. Since extensions are …
Mar 25, 2009:
- 10:01 PM Ticket #1259 (Exporting spot data (with table exporter): Bioassay column is ...) reopened by
- 8:30 PM Ticket #1272 (Add support for using Formatters to SimpleExporter (aka. table exporter)) created by
- The typical use case for a Formatter is to format a raw value into a …
- 8:10 PM Ticket #1271 (Add extension points to all toolbars) created by
- The extension system that was developed some time ago for BASE can be …
- 7:57 PM Ticket #1270 (Online editing of text files) created by
- Add a function that allows online editing of text files on the BASE …
- 2:14 PM Changeset [4846] by
- Changes for future release 2.12
- 2:13 PM Changeset [4845] by
- Forking new minor version 2.11 branch
- 1:23 PM Changeset [4844] by
- Fixes #1269: Biomaterial batch importers should use alphanumeric …
- 1:23 PM Ticket #1269 (Biomaterial batch importers should use alphanumeric coordinate system ...) closed by
- fixed: (In [4844]) Fixes #1269: Biomaterial batch importers should use …
- 1:12 PM Changeset [4843] by
- References #1243: Fix TestBioAssaySetExporter? and include it in …
- 11:25 AM Ticket #1269 (Biomaterial batch importers should use alphanumeric coordinate system ...) created by
- See #1266 for a background. I think this needs to go in as soon as …
- 8:57 AM Ticket #1240 (Implement "lazy loading" in the generic "item overview") closed by
- fixed: (In [4842]) Fixes #1240. Implement "lazy loading" in the generic "item …
- 8:57 AM Changeset [4842] by
- Fixes #1240. Implement "lazy loading" in the generic "item overview".
- 8:42 AM Changeset [4841] by
- References #1238: Check performance of BioAssaySetExporter? Fixes …
Mar 24, 2009:
- 3:55 PM Changeset [4840] by
- References #1240. The functionallity in the webclient is done. The …
- 1:27 PM Changeset [4839] by
- Fixes #1268: Can't use filter on list page until it has been loaded …
- 1:27 PM Ticket #1268 (Can't use filter on list page until it has been loaded completely) closed by
- fixed: (In [4839]) Fixes #1268: Can't use filter on list page until it has …
- 1:10 PM Ticket #1242 (Generate <img> tag for spot images with a class attribute) closed by
- fixed: (In [4838]) Fixes #1242: Generate <img> tag for spot images with a …
- 1:10 PM Changeset [4838] by
- Fixes #1242: Generate <img> tag for spot images with a class attribute …
- 12:55 PM Ticket #1232 (Long running getAllInheritedAnnotations query) closed by
- worksforme
- 11:24 AM Changeset [4837] by
- Fixes #1265: Hybridization batch importer should set "number of …
- 11:24 AM Ticket #1265 (Hybridization batch importer should set "number of arrays" automatically) closed by
- fixed: (In [4837]) Fixes #1265: Hybridization batch importer should set …
- 11:10 AM Ticket #1264 (Raw bioassay batch importer should set array design automatically) closed by
- fixed: (In [4836]) Fixes #1264: Raw bioassay batch importer should set array …
- 11:10 AM Changeset [4836] by
- Fixes #1264: Raw bioassay batch importer should set array design …
- 9:26 AM Ticket #1268 (Can't use filter on list page until it has been loaded completely) created by
- ... and as a consequence I may get the message as displayed in the …
- 9:22 AM Changeset [4835] by
- Merged patch release 2.10.1 to the trunk.
- 9:16 AM Changeset [4834] by
- Changes for future release 2.10.2
- 9:15 AM Milestone BASE 2.10.1 completed
- Bug fixes for 2.10. Revision Log: log:branches/2.10-stable@4787:4833
- 9:15 AM DownloadPage edited by
- Releasing BASE 2.10.1 (diff)
- 8:48 AM Changeset [4833] by
- Tagging version 2.10.1
- 8:48 AM Changeset [4832] by
- Preparing release 2.10.1
- 8:35 AM Ticket #1253 (plainMatrixExport documentation needs to be clarified) closed by
- invalid: Hmm.. just checked the (Javadoc) documentation. It says: The row is …
- 8:28 AM Ticket #1260 (Incorrect title on import dialog when opened from array slide and ...) closed by
- fixed: (In [4831]) Fixes #1260: Incorrect title on import dialog when opened …
- 8:28 AM Changeset [4831] by
- Fixes #1260: Incorrect title on import dialog when opened from array …
Mar 23, 2009:
- 6:00 PM Ticket #1267 (The nice colourful display of ratios in experiment explorer should ...) closed by
- worksforme: This can be configured on the formula.
- 5:26 PM Ticket #1267 (The nice colourful display of ratios in experiment explorer should ...) created by
- I have users requesting the colour square also for M values. Is this …
- 5:24 PM Ticket #1266 (Bioplate coordinates are numbers but it would be better to have ...) created by
- Bioplate row/col coordinates are numbers [0..n,0..m] whereas the …
- 4:46 PM Changeset [4830] by
- References #1240. Some adjustments on menuitems' tooltip- and cursor- …
- 3:36 PM Ticket #1261 (Global cache for static data) closed by
- fixed
- 3:28 PM Changeset [4829] by
- Fixes #903: Experiment Explorer is slow Store list of position in the …
- 3:28 PM Ticket #903 (Experiment Explorer is slow) closed by
- fixed: (In [4829]) Fixes #903: Experiment Explorer is slow Store list of …
- 1:10 PM Changeset [4828] by
- Fixes #1262: Overview and correction factor plots should use the …
- 1:10 PM Ticket #1262 (Overview and correction factor plots should use the static cache) closed by
- fixed: (In [4828]) Fixes #1262: Overview and correction factor plots should …
- 1:09 PM Changeset [4827] by
- References #1261: Global cache for static data The cache is now …
Mar 21, 2009:
- 11:45 AM Ticket #1263 (Set some values automatically when creating items with the batch importers) closed by
- duplicate: Part i) of this ticket is now replaced by #1264 and #1265. Part ii) …
- 11:44 AM Ticket #1265 (Hybridization batch importer should set "number of arrays" automatically) created by
- This should happen in a similar way as in the GUI if: * The value …
- 11:42 AM Ticket #1264 (Raw bioassay batch importer should set array design automatically) created by
- This should happen in a similar way as in the GUI if: * No array …
Mar 20, 2009:
- 8:08 PM Changeset [4826] by
- Added missing file
- 4:33 PM Ticket #1263 (Set some values automatically when creating items with the batch importers) created by
- In the tickets referenced below some smartness was added to the GUI …
- 3:41 PM Changeset [4825] by
- References #1262: Overview and correction factor plots should use the …
- 3:40 PM Changeset [4824] by
- References #1261: Global cache for static data A prototype …
- 11:19 AM Ticket #1262 (Overview and correction factor plots should use the static cache) created by
- There is no need to re-generate the plots every time a user visits the …
- 8:58 AM Ticket #1261 (Global cache for static data) created by
- Implement a global, file-based, cache that can be used to store …
Mar 19, 2009:
- 4:08 PM Changeset [4823] by
- References #1240. The node-icons are getting updated when expanding …
- 3:28 PM Ticket #1260 (Incorrect title on import dialog when opened from array slide and ...) created by
- Clicking of the import button starts the hybridization importer?? …
- 2:06 PM Changeset [4822] by
- Fixes #1255: Make annotation importer handle units
- 2:06 PM Ticket #1255 (Make annotation importer handle units) closed by
- fixed: (In [4822]) Fixes #1255: Make annotation importer handle units
- 9:13 AM Ticket #1216 (Annotation importer selects "wrong" configuration) closed by
- worksforme: Closing this ticket since no feedback has been provided.
- 9:12 AM Ticket #1079 (Raw data import takes very long time to fail when user exceeds quota) closed by
- invalid: Closing this ticket since no feedback has been provided.
- 9:12 AM Ticket #1195 (Problem when importing negative values for annotations with float as ...) closed by
- invalid: Closing this ticket since no feedback has been provided.
- 9:05 AM Ticket #1256 (Query used in exportPlainMatrix method in BioAssaySetExporter must be ...) closed by
- wontfix: Since it is a bad idea to repeat the query I think the core should not …
Mar 18, 2009:
- 3:42 PM Changeset [4821] by
- References #1238: Check performance of BioAssaySetExporter? Need …
- 2:18 PM Changeset [4820] by
- References #1238: Check performance of BioAssaySetExporter? Fixes a …
- 2:10 PM Changeset [4819] by
- References #1248: Long running job may cause a timeout on session on …
Mar 17, 2009:
- 11:44 AM Ticket #1244 (Incorrect documentation in MenuItemAction) closed by
- fixed: (In [4818]) Fixes #1244: Incorrect documentation in MenuItemAction?
- 11:44 AM Changeset [4818] by
- Fixes #1244: Incorrect documentation in MenuItemAction?
- 10:53 AM Ticket #1251 (Improvements of the 'performance' test program) closed by
- fixed
- 10:53 AM Ticket #1238 (Check performance of BioAssaySetExporter) closed by
- fixed
- 9:07 AM Changeset [4817] by
- References #903: Experiment Explorer is slow Testing the idea of …
Mar 16, 2009:
- 3:15 PM Changeset [4816] by
- References #1240 The item-overview tree is now using lazy loading. The …
- 2:41 PM Changeset [4815] by
- References #903: Experiment Explorer is slow Testing the idea of …
- 9:39 AM Ticket #1257 (Use multiple threads in Lowess) closed by
- fixed: (In [4814]) Fixes #1257: Use multiple threads in Lowess Removed debug …
- 9:39 AM Changeset [4814] by
- Fixes #1257: Use multiple threads in Lowess Removed debug output.
- 9:24 AM Changeset [4813] by
- References #1257: Use multiple threads in Lowess Now uses …
- 9:09 AM Ticket #1259 (Exporting spot data (with table exporter): Bioassay column is ...) closed by
- wontfix: No it not possible for the exporter to have this information. It …
- 8:57 AM Ticket #1259 (Exporting spot data (with table exporter): Bioassay column is ...) created by
- How do I as a user know which bioassay 1, 2, 3 and so on corresponds …
Mar 13, 2009:
- 3:55 PM Ticket #1258 (New export format for bioassay set spot data) created by
- It would be nice to be able to export bioassay set spot data without …
- 3:05 PM Changeset [4812] by
- References #1257: Use multiple threads in Lowess Trying a different …
- 2:00 PM Changeset [4811] by
- References #1257: Use multiple threads in Lowess Checking in a …
- 12:44 PM Changeset [4810] by
- References #1238: Check performance of BioAssaySetExporter? Cleaning …
- 11:37 AM Changeset [4809] by
- References #903: Experiment Explorer is slow Sort positions in …
- 11:09 AM Changeset [4808] by
- References #903: Experiment Explorer is slow Increased the cache to …
- 8:21 AM Ticket #1257 (Use multiple threads in Lowess) created by
- The Lowess plug-in is spending most if it's time doing calculations, …
Mar 12, 2009:
- 11:13 AM Changeset [4807] by
- References #1238: Check performance of BioAssaySetExporter? This "fix" …
Mar 11, 2009:
- 12:24 PM Ticket #1256 (Query used in exportPlainMatrix method in BioAssaySetExporter must be ...) created by
- ... I think. My problem is that I export a plain matrix, make …
- 8:43 AM Specifications/Test_procedures edited by
- Linking to new performance test document (diff)
- 8:40 AM Specifications/Test_procedures/Roles edited by
- (diff)
Mar 10, 2009:
- 6:06 PM Ticket #1255 (Make annotation importer handle units) created by
- The annotation importer should be able to handle units, refs …
- 6:02 PM Ticket #1254 (How about change of file type for list of files?) created by
- Add support to change file type for files selected in the file viewer, …
- 5:56 PM Ticket #978 (Unzipped files never inherit file type specified during upload) reopened by
- Reopening this ticket and adding to the BASE 3.0 milestone for …
- 5:34 PM Ticket #1253 (plainMatrixExport documentation needs to be clarified) created by
- The documentation says that reporters and assays are ordered in …
- 3:02 PM Changeset [4806] by
- References #1251: Improvements of the 'performance' test program 1-4 …
- 2:49 PM Ticket #1252 (Core export plug-ins section; bioassay set exports) created by
- We should add information on what file formats can be exported ... …
- 9:18 AM Changeset [4805] by
- References #1251: Improvements of the 'performance' test program …
- 9:09 AM Ticket #1251 (Improvements of the 'performance' test program) created by
- I will gather a few enhancements to the 'performance' test program …
- 9:05 AM Changeset [4804] by
- Fixes #1250: The internal job queue start jobs that has been marked as …
- 9:05 AM Ticket #1250 (The internal job queue start jobs that has been marked as "removed") closed by
- fixed: (In [4804]) Fixes #1250: The internal job queue start jobs that has …
Mar 9, 2009:
Mar 6, 2009:
- 3:37 PM Changeset [4803] by
- References #1238: Check performance of BioAssaySetExporter? Added test …
- 2:54 PM Ticket #1250 (The internal job queue start jobs that has been marked as "removed") created by
- 1. Do anything that ends up in registration of a job, for example, an …
- 10:44 AM Ticket #1249 (Error message explanation subsection in FAQ part of the manual) created by
- We should probably add a section explaining some error messages in the …
- 9:16 AM Changeset [4802] by
- Fixes #1247: BioAssaySetExporter? doesn't update progress when …
- 9:16 AM Ticket #1247 (BioAssaySetExporter doesn't update progress when exporting to BASEFile ...) closed by
- fixed: (In [4802]) Fixes #1247: BioAssaySetExporter? doesn't update progress …
Mar 5, 2009:
- 1:26 PM Changeset [4801] by
- Fixes #1248: Long running job may cause a timeout on session on …
- 1:26 PM Ticket #1248 (Long running job may cause a timeout on session on internal job queue) closed by
- fixed: (In [4801]) Fixes #1248: Long running job may cause a timeout on …
- 12:44 PM Ticket #1246 (Annotation importer refuses to skip bad lines) closed by
- fixed: (In [4800]) Fixes #1246 Annotation importer refuses to skip bad lines. …
- 12:44 PM Changeset [4800] by
- Fixes #1246 Annotation importer refuses to skip bad lines. …
- 12:34 PM Changeset [4799] by
- Removed unused import
- 8:54 AM Ticket #1248 (Long running job may cause a timeout on session on internal job queue) created by
- It seems like if a job doesn't do anything for some time that triggers …
Mar 4, 2009:
- 1:07 PM Ticket #1247 (BioAssaySetExporter doesn't update progress when exporting to BASEFile ...) created by
- The progress stands at 0% until the export has finished. If exporting …
Mar 3, 2009:
- 8:45 AM Ticket #1241 (Implement "lazy loading" of the directory tree) closed by
- fixed: (In [4798]) Fixes #1241: Implement "lazy loading" of the directory …
- 8:45 AM Ticket #1242 (Generate <img> tag for spot images with a class attribute) reopened by
- Oopss.. the previous commit should have gone to #1241.
- 8:43 AM Changeset [4798] by
- Fixes #1242: Implement "lazy loading" of the directory tree Forgot …
- 8:43 AM Ticket #1242 (Generate <img> tag for spot images with a class attribute) closed by
- fixed: (In [4798]) Fixes #1242: Implement "lazy loading" of the directory …
- 8:42 AM Changeset [4797] by
- Fixes #1245: Add support for lazy loading of nodes in JoustTree? Made …
- 8:42 AM Ticket #1245 (Add support for lazy loading of nodes in JoustTree) closed by
- fixed: (In [4797]) Fixes #1245: Add support for lazy loading of nodes in …
Mar 2, 2009:
- 7:58 PM Changeset [4796] by
- References #1241: Implement "lazy loading" of the directory tree We …
- 2:33 PM Ticket #1246 (Annotation importer refuses to skip bad lines) created by
- I have a file (attached) that refuses to import. All lines with valid …
- 11:34 AM Changeset [4795] by
- References #1245: Add support for lazy loading of nodes in JoustTree? …
- 11:32 AM Changeset [4794] by
- References #1241: Implement "lazy loading" of the directory tree I …
Feb 27, 2009:
- 2:52 PM Changeset [4793] by
- References #1245: Add support for lazy loading of nodes in JoustTree? …
- 12:32 PM DownloadPage edited by
- Changed an Invalid link (diff)
- 11:49 AM Ticket #1245 (Add support for lazy loading of nodes in JoustTree) created by
- The JoustTree? component is used to generate various overviews that are …
- 8:54 AM Ticket #1244 (Incorrect documentation in MenuItemAction) created by
- The class documentation for …
Feb 26, 2009:
- 2:43 PM Ticket #1237 (BioAssaySetExporter should attach generated files to the bioassayset) closed by
- fixed
- 9:28 AM Changeset [4792] by
- References #1237: BioAssaySetExporter? should attach generated files to …
Feb 25, 2009:
- 10:55 AM Changeset [4791] by
- References #1237: BioAssaySetExporter? should attach generated files to …
- 9:58 AM Changeset [4790] by
- Fixes #1243: Fix TestBioAssaySetExporter? and include it in TestAll? …
- 9:58 AM Ticket #1243 (Fix TestBioAssaySetExporter and include it in TestAll) closed by
- fixed: (In [4790]) Fixes #1243: Fix TestBioAssaySetExporter? and include it in …
- 9:12 AM Ticket #1243 (Fix TestBioAssaySetExporter and include it in TestAll) created by
- I just found out that the TestBioAssaySetExporter? is not included in …
Feb 24, 2009:
- 12:57 PM Ticket #1242 (Generate <img> tag for spot images with a class attribute) created by
- Greetings! I'm using base-2.9.2 on tomcat 6.0.18 in Geronimo 2.1.3. …
- 12:50 PM Ticket #1239 (Units for concentrations) closed by
- invalid: Of course. Somehow I missed density!
- 11:33 AM Ticket #1241 (Implement "lazy loading" of the directory tree) created by
- On a server with lots of user's the file manager is almost impossible …
- 11:30 AM Ticket #1240 (Implement "lazy loading" in the generic "item overview") created by
- This means that a sub-tree should not be loaded until a user opens the …
- 11:22 AM Ticket #1239 (Units for concentrations) created by
- I think we should add a quantity/unit type for concentrations. I …
- 11:19 AM Ticket #1238 (Check performance of BioAssaySetExporter) created by
- This is slightly related to #1237 and may be caused by the same thing …
- 11:17 AM Ticket #1237 (BioAssaySetExporter should attach generated files to the bioassayset) created by
- The main reason is that we want to change the MeV launcher so that it …
- 11:09 AM Milestone BASE 2.10 completed
- The focus in this release will be to enhance the biomaterial section …
- 11:07 AM Changeset [4789] by
- Merged pre-2.10-releases to the trunk.
- 10:01 AM DownloadPage edited by
- Releasing BASE 2.10 (diff)
- 9:56 AM Changeset [4788] by
- Changes for future release 2.10.1
- 9:42 AM Changeset [4787] by
- Tagging version 2.10
- 9:40 AM Changeset [4786] by
- References #1193: Generic tree-like item overview Fixed javadoc that …
- 9:36 AM Changeset [4785] by
- Preparing release 2.10
- 8:23 AM Ticket #1190 (API and interface for creating biomaterial lists) closed by
- fixed
- 8:22 AM Ticket #1175 (Biomaterial lists) closed by
- fixed
Note: See TracTimeline
for information about the timeline view.
