Timeline
Oct 22, 2009:
- 5:36 PM Ticket #1414 (Search function that searches all directories for a file/directory) created by
- If you are looking for a file but doesn't know in which directory it …
- 3:24 PM Ticket #1398 (File tree filter) closed by
- wontfix: Replaced by #1413 which is probably a better solution.
- 3:22 PM Ticket #1413 (Make the directory icon clickable in the Files and directories view) created by
- When the icon is clicked, the same thing should happen as if the user …
- 1:45 PM Ticket #1349 (Select button does not work in IE7.0 + XP Home SP3) closed by
- worksforme
- 9:10 AM Milestone BASE 2.14 completed
- The main feature of this release: * Major performance enhancements …
- 9:09 AM Changeset [5156] by
- Merged pre-2.14-releases to the trunk
- 8:52 AM DownloadPage edited by
- Releasing 2.14 (diff)
- 8:40 AM Changeset [5155] by
- Changes for future release 2.14.1
- 8:29 AM Changeset [5154] by
- Tagging version 2.14
- 8:28 AM Changeset [5153] by
- Preparing release 2.14
Oct 21, 2009:
- 2:39 PM Ticket #1412 (The selected unit for an annotation type should not be remembered when ...) closed by
- fixed: (In [5152]) Fixes #1412: The selected unit for an annotation type …
- 2:39 PM Changeset [5152] by
- Fixes #1412: The selected unit for an annotation type should not be …
- 9:46 AM Ticket #1412 (The selected unit for an annotation type should not be remembered when ...) created by
- To reproduce: 1. Create a numerical annotation type. Select any …
Oct 20, 2009:
- 2:51 PM Changeset [5151] by
- Changes for future release 2.15
- 2:50 PM Changeset [5150] by
- Forking new minor version 2.14 branch
- 2:49 PM Ticket #1386 (Plot function in the bioassay table in experiment explorer) closed by
- fixed: (In [5149]) Fixes #1386: Plot function in the bioassay table in …
- 2:49 PM Changeset [5149] by
- Fixes #1386: Plot function in the bioassay table in experiment …
- 2:35 PM Changeset [5148] by
- Fixes #1410 Sort problem in EExplorer when Avg
- 2:35 PM Ticket #1410 (Sort problem in EExplorer when Avg) closed by
- fixed: (In [5148]) Fixes #1410 Sort problem in EExplorer when Avg
- 12:33 PM Changeset [5147] by
- Fixes #1389: Cache annotation summary groups in experiment explorer …
- 12:33 PM Ticket #1389 (Cache annotation summary groups in experiment explorer) closed by
- fixed: (In [5147]) Fixes #1389: Cache annotation summary groups in experiment …
- 10:26 AM Changeset [5146] by
- Fixes #1411: Test programs must empty the static cache before running
- 10:26 AM Ticket #1411 (Test programs must empty the static cache before running) closed by
- fixed: (In [5146]) Fixes #1411: Test programs must empty the static cache …
- 8:50 AM Changeset [5145] by
- Fixes #1404: Use cached annotations in "item overview" The tests in …
- 8:50 AM Ticket #1404 (Use cached annotations in "item overview") closed by
- fixed: (In [5145]) Fixes #1404: Use cached annotations in "item overview" …
- 8:21 AM Changeset [5144] by
- Fixes #1406: Add a protocol parameter in the 'roles' test case Added …
- 8:21 AM Ticket #1406 (Add a protocol parameter in the 'roles' test case) closed by
- fixed: (In [5144]) Fixes #1406: Add a protocol parameter in the 'roles' test …
- 7:51 AM Ticket #1389 (Cache annotation summary groups in experiment explorer) reopened by
- See comment 19+ in ticket 1374
Oct 19, 2009:
- 3:32 PM Ticket #1411 (Test programs must empty the static cache before running) created by
- If old data from previous executions is still in the cache, the test …
- 2:54 PM Ticket #1410 (Sort problem in EExplorer when Avg) created by
- Noticed that sorting of the bioassay table in EExplorer doesn't work …
- 1:32 PM Changeset [5143] by
- References #1404: Use cached annotations in "item overview" Fixes a …
- 11:34 AM Ticket #1385 (Plot function in the annotation summary table in experiment explorer) closed by
- fixed: Everything seems to be ok now.
- 9:42 AM Ticket #1409 (Annotation summary table displays NaNs) closed by
- worksforme: Works for me now as of trunk revision 5142
- 9:11 AM Changeset [5142] by
- References #1385 and #1386. Plot functions in experiment explorer The …
- 9:03 AM Changeset [5141] by
- References #1386: Plot function in the bioassay table in experiment …
- 8:25 AM Changeset [5140] by
- References #1384: Move the annotation summary information table in …
- 8:22 AM Changeset [5139] by
- References #1388: Display the count for each group in the annotation …
Oct 16, 2009:
- 4:57 PM Ticket #1408 (Cannot deselect annotation in the annoation summary drop down) closed by
- worksforme: I can.
- 4:54 PM Ticket #1407 (Functionality of the "No labels" selection in plot function in the ...) closed by
- wontfix: It is not possible. The only way to know the coordinates were to put …
- 3:58 PM Ticket #1409 (Annotation summary table displays NaNs) created by
- The screen dump shows the problem.
- 3:47 PM Ticket #1408 (Cannot deselect annotation in the annoation summary drop down) created by
- Related to ticket:1383 After selecting one annotation (out of one …
- 3:43 PM Ticket #1407 (Functionality of the "No labels" selection in plot function in the ...) created by
- Related to ticket:1386 Checking the No labels box removes all labels …
- 2:39 PM Ticket #1406 (Add a protocol parameter in the 'roles' test case) created by
- To get some more automatic testing for the 'item overview' …
- 2:27 PM Changeset [5138] by
- References #1385 and #1386. Plot functions in experiment explorer …
Oct 15, 2009:
- 9:42 AM Changeset [5137] by
- References #1383: Make it possible to select more than one annotation …
- 8:33 AM Changeset [5136] by
- Merged patch release 2.13.1 to the trunk.
- 8:18 AM Milestone BASE 2.13.1 completed
- Bug fixes for 2.13. Revision Log: log:branches/2.13-stable@5089:5134
- 8:17 AM DownloadPage edited by
- Releasing BASE 2.13.1 (diff)
- 8:13 AM Changeset [5135] by
- Changes for future release 2.13.2
- 8:02 AM Changeset [5134] by
- Tagging version 2.13.1
- 8:01 AM Changeset [5133] by
- Preparing release 2.13.1 and fixed some incorrect javadoc links.
Oct 14, 2009:
- 1:55 PM Changeset [5132] by
- References #1404: Use cached annotations in "item overview" This …
- 9:44 AM Changeset [5131] by
- References #1374 and #1403: Caching of annotations, etc... Made some …
Oct 13, 2009:
- 2:17 PM Ticket #1405 (Use 'description' as help text for job parameters if the plug-in ...) created by
- The 'Run analysis plugin' pop-up dialogue can contain a useful plugin …
- 12:44 PM Changeset [5130] by
- Fixes #1403: Use cached annotations in experiment explorer, plot …
- 12:44 PM Ticket #1403 (Use cached annotations in experiment explorer, plot function, BASEfile ...) closed by
- fixed: (In [5130]) Fixes #1403: Use cached annotations in experiment …
- 11:11 AM WikiStart edited by
- Updated how to cite information. (diff)
- 8:49 AM Ticket #1400 (Store the item id together with annotation sets) closed by
- fixed: (In [5129]) Fixes #1400: Store the item id together with annotation …
- 8:49 AM Changeset [5129] by
- Fixes #1400: Store the item id together with annotation sets More …
- 8:29 AM Changeset [5128] by
- Fixes #1374: Caching of experimental factors Removed timing code.
- 8:29 AM Ticket #1374 (Caching of experimental factors) closed by
- fixed: (In [5128]) Fixes #1374: Caching of experimental factors Removed …
- 8:26 AM Ticket #1404 (Use cached annotations in "item overview") created by
- Caching was fixed in #1374. It seems to be a major performance enhancement.
- 8:25 AM Ticket #1403 (Use cached annotations in experiment explorer, plot function, BASEfile ...) created by
- Caching was fixed in #1374. It seems to be a major performance enhancement.
Oct 12, 2009:
- 2:41 PM Changeset [5127] by
- References #1400: Store the item id together with annotation sets The …
- 1:00 PM Ticket #1402 (New Affymetrix CEL file support) created by
- New is a "generic" CEL data file format, for which BASE Affy import …
Oct 9, 2009:
- 2:36 PM Changeset [5126] by
- Fixes #1392: Incorrect warning about non-default platform/variant from …
- 2:36 PM Ticket #1392 (Incorrect warning about non-default platform/variant from validator) closed by
- fixed: (In [5126]) Fixes #1392: Incorrect warning about non-default …
- 2:28 PM Changeset [5125] by
- Fixes #1399: Array slide's create multiple puts a wrong number into …
- 2:28 PM Ticket #1399 (Array slide's create multiple puts a wrong number into batch index field) closed by
- fixed: (In [5125]) Fixes #1399: Array slide's create multiple puts a wrong …
- 1:20 PM Changeset [5124] by
- References #1374: Caching of experimental factors Implements our own …
- 12:37 PM Changeset [5123] by
- References #1374: Caching of experimental factors The 'Annotations & …
- 10:55 AM Changeset [5122] by
- References #1400: Store the item id together with annotation sets …
- 10:54 AM Changeset [5121] by
- References #1374: Caching of experimental factors This should …
Oct 8, 2009:
- 2:30 PM Changeset [5120] by
- References #1374: Caching of experimental factors The cache is now …
- 10:46 AM Changeset [5119] by
- Fixes #1401: One-to-one associations should not be synchronized in the …
- 10:46 AM Ticket #1401 (One-to-one associations should not be synchronized in the data layer ...) closed by
- fixed: (In [5119]) Fixes #1401: One-to-one associations should not be …
- 9:44 AM Ticket #1401 (One-to-one associations should not be synchronized in the data layer ...) created by
- See …
- 9:12 AM Changeset [5118] by
- References #1400: Store the item id together with annotation sets
- 7:57 AM Ticket #1400 (Store the item id together with annotation sets) created by
- This would make it easier to load the item that is related to an …
Oct 6, 2009:
- 3:01 PM Ticket #1399 (Array slide's create multiple puts a wrong number into batch index field) created by
- I noticed that when one uses Create multiple wizard on Array Slide …
- 2:09 PM Ticket #1398 (File tree filter) created by
- It would be great to have a little project-filter in the directory …
- 12:38 PM Ticket #1397 (Function to inherit annotations for all experimental factors in the ...) created by
- This ticket elaborate on some points raised in ticket:1374 …
Oct 5, 2009:
- 6:13 PM Ticket #1396 (Using item properties as experimental factors - how could this be ...) created by
- Would it be possible to somehow make item properties (or some selected …
- 9:27 AM Changeset [5117] by
- Fixes #1394: Inherit annotations (Experimental factors) not available …
- 9:27 AM Ticket #1394 (Inherit annotations (Experimental factors) not available for ...) closed by
- fixed: (In [5117]) Fixes #1394: Inherit annotations (Experimental factors) …
- 9:19 AM Changeset [5116] by
- Fixes #1347: Enable Appearance feature 'Display long text' in …
- 8:54 AM Ticket #1395 (Exerimental factors table width should not be determined by ...) closed by
- fixed: (In [5115]) Fixes #1395: Exerimental factors table width should not be …
- 8:54 AM Changeset [5115] by
- Fixes #1395: Exerimental factors table width should not be determined …
Oct 2, 2009:
- 4:56 PM Ticket #1395 (Exerimental factors table width should not be determined by ...) created by
- Use case: An Experiment with 70 Experimental factors will have a …
- 2:29 PM Changeset [5114] by
- References #1386: Plot function in the bioassay table in experiment …
- 8:36 AM Changeset [5113] by
- Refs #1393. Bumped tomcat version requirement.
- 8:23 AM Ticket #1393 (The "Edit file" function should check the size after loading/before saving) closed by
- fixed: (In [5112]) Fixes #1393: The "Edit file" function should check the …
- 8:23 AM Changeset [5112] by
- Fixes #1393: The "Edit file" function should check the size after …
Oct 1, 2009:
- 3:56 PM Ticket #1394 (Inherit annotations (Experimental factors) not available for ...) created by
- The functionality that allow rawbioassays to inherit experimental …
- 1:19 PM Ticket #1393 (The "Edit file" function should check the size after loading/before saving) created by
- The "Edit file" function is useful for editing text files below 100kb …
- 1:14 PM Ticket #1392 (Incorrect warning about non-default platform/variant from validator) created by
- Setup a project and an array design as follows: * Create a new …
Sep 30, 2009:
- 12:56 PM Changeset [5111] by
- Fixes #1380 and #1381: Customize visible reporter fields in experiment …
- 12:56 PM Tickets #1380,1381 batch updated by
- fixed: (In [5111]) Fixes #1380 and #1381: Customize visible reporter fields …
- 12:39 PM Ticket #1347 (Enable Appearance feature 'Display long text' in Experiment - ...) closed by
- worksforme: No, the description in the posted image is not expected to be hidden. …
- 11:55 AM Ticket #1347 (Enable Appearance feature 'Display long text' in Experiment - ...) reopened by
Sep 29, 2009:
- 12:25 PM Changeset [5110] by
- Added entry to the FAQ.
- 11:31 AM Ticket #1391 (The import button in experiment overview when all raw bioassays are ...) closed by
- wontfix: This is a standardized message appearing at all places were no plug-in …
- 11:21 AM Changeset [5109] by
- Fixes #1390: Annotation groups should be sorted according to title
- 11:21 AM Ticket #1390 (Annotation groups should be sorted according to title) closed by
- fixed: (In [5109]) Fixes #1390: Annotation groups should be sorted according …
- 11:10 AM Ticket #1391 (The import button in experiment overview when all raw bioassays are ...) created by
- The message says […] The issue is really that BASE cannot find any …
- 11:06 AM Ticket #1390 (Annotation groups should be sorted according to title) created by
- The annotation groups are sorted in a semi-random order. The order …
- 11:04 AM Changeset [5108] by
- Fixes #1389: Cache annotation summary groups in experiment explorer
- 11:04 AM Ticket #1389 (Cache annotation summary groups in experiment explorer) closed by
- fixed: (In [5108]) Fixes #1389: Cache annotation summary groups in experiment …
- 9:53 AM Ticket #1389 (Cache annotation summary groups in experiment explorer) created by
-
This may be related to #1387.
Currently, new
AnnotationSummary… - 9:49 AM Changeset [5107] by
- Fixes #1388: Display the count for each group in the annotation …
- 9:49 AM Ticket #1388 (Display the count for each group in the annotation summary in ...) closed by
- fixed: (In [5107]) Fixes #1388: Display the count for each group in the …
- 9:41 AM Ticket #1388 (Display the count for each group in the annotation summary in ...) created by
- 9:40 AM Tickets #1382,1384 batch updated by
- fixed: (In [5106]) Fixes #1382 and #1384: Move annotation summary selection …
- 9:40 AM Changeset [5106] by
- Fixes #1382 and #1384: Move annotation summary selection and tables
Sep 28, 2009:
- 2:53 PM Changeset [5105] by
- Fixes #1383: Make it possible to select more than one annotation in …
- 2:53 PM Ticket #1383 (Make it possible to select more than one annotation in experiment explorer) closed by
- fixed: (In [5105]) Fixes #1383: Make it possible to select more than one …
- 11:39 AM Ticket #1372 (Item link in the 'Overview' tab should use the regular click-to-view ...) closed by
- fixed: (In [5104]) Fixes #1372: Item link in the 'Overview' tab should use …
- 11:39 AM Changeset [5104] by
- Fixes #1372: Item link in the 'Overview' tab should use the regular …
- 10:45 AM Ticket #1379 (Change default minimum intensity value and add support for 0=all ...) closed by
- fixed: (In [5103]) Fixes #1379: Change default minimum intensity value and …
- 10:45 AM Changeset [5103] by
- Fixes #1379: Change default minimum intensity value and add support …
- 9:02 AM Ticket #1368 (Reload permissions when the refresh button is clicked) closed by
- wontfix: This is the use case that lead to the 'Reload permissions' function …
- 8:33 AM Ticket #1375 (Improve experiment explorer display) closed by
- duplicate: This ticket has been split into several new tickets as outlined in the …
- 8:31 AM Ticket #1387 (More performance enhancements needed for experiment explorer) created by
- Experiment explorer is still slow (cf ticket:903) and more performance …
- 8:30 AM Ticket #1386 (Plot function in the bioassay table in experiment explorer) created by
- A plot button in bioassay list header. 1. The plot should display …
- 8:28 AM Ticket #1385 (Plot function in the annotation summary table in experiment explorer) created by
- A plot button in annotation summary table. The plot should be a box …
- 8:26 AM Ticket #1384 (Move the annotation summary information table in experiment explorer) created by
- The annotation summary table should be created to the right of the …
- 8:25 AM Ticket #1383 (Make it possible to select more than one annotation in experiment explorer) created by
- The annotation summary dropdown should be a selection where the user …
- 8:24 AM Ticket #1382 (Move the annotation summary selection list in experiment explorer) created by
- Annotation summary dropdown menu should be moved between reporter …
- 8:21 AM Ticket #1381 (Trunkate long strings in experiment explorer) created by
- The displayed reporter annotation fields should be truncated as …
- 8:19 AM Ticket #1380 (Customize visible reporter fields in experiment explorer) created by
- The reporter annotation information display (Reporter View tab) should …
- 8:09 AM Ticket #1373 (Permission denied exception when viewing item that has inherited an ...) closed by
- fixed: (In [5102]) Fixes #1373: Permission denied exception when viewing item …
- 8:09 AM Changeset [5102] by
- Fixes #1373: Permission denied exception when viewing item that has …
Sep 23, 2009:
- 1:21 PM Ticket #1379 (Change default minimum intensity value and add support for 0=all ...) created by
- In BASE2 plugin 'Normalization: Median ratio', parameter Blockgroup …
- 11:34 AM DownloadPage edited by
- Updated link for BASE 1.2 download (diff)
Sep 22, 2009:
- 10:16 AM Ticket #1378 (Base1PluginExecuter should link the result directory with the ...) created by
- Related to ticket:1279 When a BASE1 plug-in stores result files the …
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