Timeline



Nov 14, 2011:

9:18 AM Ticket #1650 (Update 3rd-party JAR files) closed by Nicklas Nordborg
fixed
9:00 AM Changeset [5875] by Nicklas Nordborg
References #1650: Update 3rd-party JAR files Updated to Hibernate 3.6.8

Nov 11, 2011:

3:08 PM Changeset [5874] by Nicklas Nordborg
References #1650: Update 3rd-party JAR files Added note about …
2:58 PM Changeset [5873] by Nicklas Nordborg
References #1650: Update 3rd-party JAR files Updated commons-io to 1.4
1:07 PM Changeset [5872] by Nicklas Nordborg
References #1650: Update 3rd-party JAR files Updated Axis2 to 1.6.1. …
12:02 PM Changeset [5871] by Nicklas Nordborg
References #1650: Update 3rd-party JAR files Updated Ehcache to 2.4.6.
10:55 AM Changeset [5870] by Nicklas Nordborg
References #1650: Update 3rd-party JAR files Updated Apache …
10:33 AM Changeset [5869] by Nicklas Nordborg
References #1650: Update 3rd-party JAR files Updated MySQL JDBC …
9:55 AM Changeset [5868] by Nicklas Nordborg
References #1650: Update 3rd-party JAR files Updated JDOM to 1.1.2 …
9:24 AM Ticket #1650 (Update 3rd-party JAR files) created by Nicklas Nordborg
Last time was more than a year ago #1513.
9:09 AM Changeset [5867] by Nicklas Nordborg
References #1630: Migrate from MySQL to PostgreSQL Added note about …
8:22 AM Changeset [5866] by Nicklas Nordborg
References #1648 and #1613. Added a duplicate image reference to a …
8:18 AM MinorReleaseTest edited by Nicklas Nordborg
Added an 2.17->3.x upgrade test to the test protocol (diff)

Nov 10, 2011:

9:42 AM Changeset [5865] by Nicklas Nordborg
References #1630: Migrate from MySQL to PostgreSQL Added instructions …
9:15 AM Changeset [5864] by Nicklas Nordborg
Merged patch release 3.0.1 to the trunk.
8:57 AM Milestone BASE 3.0.1 completed
Bug fixes for 3.0 Revision Log: log:branches/3.0-stable@5850:5862
8:57 AM DownloadPage edited by Nicklas Nordborg
Releasing BASE 3.0.1 (diff)
8:50 AM Changeset [5863] by Nicklas Nordborg
Changes for future release 3.0.2
8:43 AM Changeset [5862] by Nicklas Nordborg
Tagging version 3.0.1
8:42 AM Changeset [5861] by Nicklas Nordborg
Preparing release 3.0.1
8:41 AM Ticket #1649 (TestFile fails since files have been moved since the BASE 3 release) closed by Nicklas Nordborg
fixed: (In [5860]) Fixes #1649: TestFile? fails since files have been moved …
8:41 AM Changeset [5860] by Nicklas Nordborg
Fixes #1649: TestFile? fails since files have been moved since the BASE …
8:35 AM Ticket #1649 (TestFile fails since files have been moved since the BASE 3 release) created by Nicklas Nordborg
[…]
8:20 AM Ticket #1647 (Incorrect information in Chapter 3. Resources) closed by Nicklas Nordborg
fixed
8:19 AM WikiStart edited by Nicklas Nordborg
Fixes #1647 (diff)
8:12 AM Changeset [5859] by Nicklas Nordborg
References #1647: Incorrect information in Chapter 3. Resources

Nov 9, 2011:

3:01 PM Ticket #1648 (Upgrading from BASE 2 to BASE 3 may create duplicate file set members) closed by Nicklas Nordborg
fixed: (In [5858]) Fixes #1648: Upgrading from BASE 2 to BASE 3 may create …
3:01 PM Changeset [5858] by Nicklas Nordborg
Fixes #1648: Upgrading from BASE 2 to BASE 3 may create duplicate file …
1:22 PM DownloadPage edited by Nicklas Nordborg
Removing BASE 3.0 release due to #1648 (diff)
1:19 PM Ticket #1648 (Upgrading from BASE 2 to BASE 3 may create duplicate file set members) created by Nicklas Nordborg
The upgrade will move all existing Image:s that has been added to a …
12:52 PM Changeset [5857] by Nicklas Nordborg
References #1630: Migrate from MySQL to PostgreSQL Testing on the …
9:20 AM Changeset [5856] by Nicklas Nordborg
References #1630: Migrate from MySQL to PostgreSQL Documented the …

Nov 8, 2011:

4:04 PM Ticket #1647 (Incorrect information in Chapter 3. Resources) created by Nicklas Nordborg
The "Roadmap" section at …
3:56 PM MinorReleaseTest edited by Nicklas Nordborg
(#1630) Added instructions to test the migration program (diff)
3:42 PM Changeset [5855] by Nicklas Nordborg
References #1630: Migrate from MySQL to PostgreSQL Using a file to …
1:43 PM Changeset [5854] by Nicklas Nordborg
References #1630: Migrate from MySQL to PostgreSQL The import step …

Nov 7, 2011:

2:50 PM Changeset [5853] by Nicklas Nordborg
References #1630: Migrate from MySQL to PostgreSQL Forgot to add the …
9:16 AM Changeset [5852] by Nicklas Nordborg
References #1630: Migrate from MySQL to PostgreSQL Implemented the …

Nov 2, 2011:

2:49 PM DownloadPage edited by Nicklas Nordborg
Fixed incorrect link to 3.0.1 milestone (diff)
10:49 AM Milestone BASE 3.0 completed
New major BASE version that will target support for sequencing …
10:44 AM BuildingBase edited by Nicklas Nordborg
Fixing links (diff)
10:03 AM WikiStart edited by Nicklas Nordborg
Fixing links (diff)
9:59 AM DeveloperInformation edited by Nicklas Nordborg
Linking to the new documentation (diff)
9:50 AM DownloadPage edited by Nicklas Nordborg
Moving older BASE 2.x version to their own download page (diff)
9:47 AM DownloadOld created by Nicklas Nordborg
Create download page for older BASE versions
9:44 AM DownloadPage edited by Nicklas Nordborg
Incorrect link to download files (diff)
9:43 AM DownloadPage edited by Nicklas Nordborg
Releasing BASE 3.0 (diff)
9:32 AM Changeset [5851] by Nicklas Nordborg
Changes for future release 3.0.1
9:16 AM Changeset [5850] by Nicklas Nordborg
Tagging version 3.0
9:15 AM Changeset [5849] by Nicklas Nordborg
Preparing release 3.0
8:39 AM Changeset [5848] by Nicklas Nordborg
Changes for future release 3.1
8:37 AM Changeset [5847] by Nicklas Nordborg
Forking 3.0-stable branch

Nov 1, 2011:

7:02 PM Ticket #523 (Write "Overview of BASE" section in Overview part) closed by Jari Häkkinen
fixed: (In [5846]) Fixes #523.
7:02 PM Changeset [5846] by Jari Häkkinen
Fixes #523.
5:58 PM Changeset [5845] by Jari Häkkinen
Addresses #523.
5:05 PM Ticket #522 (Write "Why use BASE" section) closed by Jari Häkkinen
fixed: (In [5844]) Fixes #522. After five years …
5:05 PM Changeset [5844] by Jari Häkkinen
Fixes #522. After five years …
3:46 PM Ticket #1646 (Table exporter should use .csv and .xml file extensions when ...) closed by Nicklas Nordborg
fixed: (In [5843]) Fixes #1646: Table exporter should use .csv and .xml file …
3:46 PM Changeset [5843] by Nicklas Nordborg
Fixes #1646: Table exporter should use .csv and .xml file extensions …
3:37 PM Ticket #1637 (Test BASE with PostgreSQL 9) closed by Nicklas Nordborg
fixed: (In [5842]) Fixes #1637: Test BASE with PostgreSQL 9 Documented that …
3:37 PM Changeset [5842] by Nicklas Nordborg
Fixes #1637: Test BASE with PostgreSQL 9 Documented that we only …
2:57 PM Ticket #1646 (Table exporter should use .csv and .xml file extensions when ...) created by Nicklas Nordborg
The current implementation give all files a .txt extension which is …
2:11 PM Ticket #1636 (Test BASE with Tomcat 7) closed by Nicklas Nordborg
fixed: (In [5841]) Fixes #1636: Test BASE with Tomcat 7 Updated …
2:11 PM Changeset [5841] by Nicklas Nordborg
Fixes #1636: Test BASE with Tomcat 7 Updated documentation with …
1:28 PM Changeset [5840] by Nicklas Nordborg
References #1636: Test BASE with Tomcat 7 Using a private logger …
1:12 PM Changeset [5839] by Nicklas Nordborg
References #1636: Test BASE with Tomcat 7 Fixes JSP compilation problems.
12:10 PM Ticket #1635 (Test BASE with Java 7) closed by Nicklas Nordborg
fixed: (In [5838]) Fixes #1635: Test BASE with Java 7 BASE itself seems to …
12:10 PM Changeset [5838] by Nicklas Nordborg
Fixes #1635: Test BASE with Java 7 BASE itself seems to be working …
12:06 PM BuildingBase edited by Nicklas Nordborg
Added information about compiling BASE with Java 7 (#1635) (diff)
9:31 AM Ticket #1618 (Improve "Reporter search" performance in experiment explorer) closed by Nicklas Nordborg
fixed: Tested with some data from the production server. Except for the …

Oct 31, 2011:

1:02 PM Ticket #1615 (Add test program in BASE 2.17 that create data that need special ...) closed by Nicklas Nordborg
fixed
1:02 PM Ticket #1591 (Upgrade script for BASE 2.17 --> 3.0) closed by Nicklas Nordborg
fixed
1:00 PM Changeset [5837] by Nicklas Nordborg
References #1591: Upgrade script for BASE 2.17 --> 3.0 Create a …

Oct 28, 2011:

11:36 AM Ticket #1645 (Enable sorting and filtering on free wells column in bioplate listing) closed by Nicklas Nordborg
fixed: (In [5836]) Fixes #1645: Enable sorting and filtering on free wells …
11:36 AM Changeset [5836] by Nicklas Nordborg
Fixes #1645: Enable sorting and filtering on free wells column in …
11:36 AM Ticket #1645 (Enable sorting and filtering on free wells column in bioplate listing) created by Nicklas Nordborg
This is mentioned in #1573, but was never implemented.
11:32 AM Changeset [5835] by Nicklas Nordborg
References #1592: Unified installation procedure for plug-ins, …

Oct 27, 2011:

2:52 PM Changeset [5834] by Nicklas Nordborg
References #1591: Upgrade script for BASE 2.17 --> 3.0 Added a short …
2:40 PM Changeset [5833] by Nicklas Nordborg
References #1591: Upgrade script for BASE 2.17 --> 3.0 Check login …
11:19 AM Changeset [5832] by Nicklas Nordborg
References #1153: Handling short read transcript sequence data Batch …
10:45 AM DeveloperInformation edited by Jari Häkkinen
Typo (diff)
9:20 AM MinorReleaseTest edited by Nicklas Nordborg
(diff)
9:20 AM MinorReleaseTest edited by Nicklas Nordborg
(diff)
9:16 AM Changeset [5831] by Nicklas Nordborg
Removed unused import.
9:13 AM Ticket #1153 (Handling short read transcript sequence data) closed by Nicklas Nordborg
fixed
9:13 AM Ticket #1590 (Documentation cleanup) closed by Nicklas Nordborg
fixed
9:13 AM Changeset [5830] by Nicklas Nordborg
References #1590: Documentation cleanup Some final updates to the …
8:16 AM Changeset [5829] by Nicklas Nordborg
References #1641: Use bcrypt for storing passwords instead of MD5 …

Oct 26, 2011:

2:17 PM Ticket #1644 (Make experiments annotable) created by Nicklas Nordborg
For background information see: …
2:12 PM Ticket #1643 (Automatic fixes in "Item overview") created by Nicklas Nordborg
The validation that is performed in the "Item overview" can usually …
2:06 PM Ticket #1642 (Add support for column mapping that selects a project default item in ...) created by Nicklas Nordborg
If a property is not mapped to a column in the batch item importers …
1:56 PM Ticket #599 (Write "Appendix: migrate.properties reference") closed by Nicklas Nordborg
wontfix: The migration program was removed a long time ago.
1:50 PM Ticket #1641 (Use bcrypt for storing passwords instead of MD5) closed by Nicklas Nordborg
fixed: (In [5828]) Fixes #1641: Use bcrypt for storing passwords instead of …
1:50 PM Changeset [5828] by Nicklas Nordborg
Fixes #1641: Use bcrypt for storing passwords instead of MD5 This …
12:51 PM Changeset [5827] by Nicklas Nordborg
References #1641: Use bcrypt for storing passwords instead of MD5 …
10:47 AM Changeset [5826] by Nicklas Nordborg
References #1590: Documentation cleanup Updated diagram and text …
10:39 AM Ticket #1640 (Use a salt value when storing hashed passwords) closed by Nicklas Nordborg
wontfix: Replaced by #1641.
10:39 AM Ticket #1641 (Use bcrypt for storing passwords instead of MD5) created by Nicklas Nordborg
This ticket replaces #1640. See …

Oct 25, 2011:

8:27 PM Ticket #1640 (Use a salt value when storing hashed passwords) created by Nicklas Nordborg
The current implementation store passwords to BASE as MD5 hash values. …
3:21 PM Changeset [5825] by Jari Häkkinen
Addresses #522 and #523.
2:27 PM Changeset [5824] by Jari Häkkinen
Addresses #522 and #523.

Oct 24, 2011:

3:02 PM Changeset [5823] by Nicklas Nordborg
References #1590: Documentation cleanup Fixed javadoc warnings.
1:44 PM Ticket #1575 (Add support for authenticator plug-in in external JAR files) closed by Nicklas Nordborg
fixed
1:44 PM Changeset [5822] by Nicklas Nordborg
References #1575: Add support for authenticator plug-in in external …
12:47 PM Changeset [5821] by Nicklas Nordborg
References #1592: Unified installation procedure for plug-ins, …
12:46 PM Changeset [5820] by Nicklas Nordborg
References #1590: Documentation cleanup Last part of the "Write …

Oct 21, 2011:

2:48 PM Changeset [5819] by Nicklas Nordborg
References #1590: Documentation cleanup The chapter about writing …
1:15 PM Changeset [5818] by Nicklas Nordborg
References #1590: Documentation cleanup Some more sections in the …
8:27 AM Ticket #1638 (Add support for 'between' operator in list pages) closed by Nicklas Nordborg
fixed: (In [5817]) Fixes #1638: Add support for 'between' operator in list pages
8:27 AM Changeset [5817] by Nicklas Nordborg
Fixes #1638: Add support for 'between' operator in list pages

Oct 20, 2011:

2:36 PM Changeset [5816] by Nicklas Nordborg
References #1590: Documentation cleanup 3 chapters in the Developer …
2:06 PM Ticket #1639 (Add support for unpacking *.gz and *.bz2 files that are not tar-ed ...) created by Nicklas Nordborg
This should now be possible to implement since #978 has been fixed and …
11:40 AM Ticket #1638 (Add support for 'between' operator in list pages) created by Nicklas Nordborg
It would be useful to filter on date and numerical columns for values …

Oct 18, 2011:

1:48 PM Changeset [5815] by Nicklas Nordborg
References #1590: Documentation cleanup New screenshots and some …
1:46 PM Changeset [5814] by Nicklas Nordborg
References #1597: Subtypes of items Validation rules for "project …
11:24 AM Ticket #1613 (Extend the 'roles' test case with some sequence-related tests) closed by Nicklas Nordborg
fixed
11:24 AM Changeset [5813] by Nicklas Nordborg
References #1613: Extend the 'roles' test case with some …

Oct 17, 2011:

4:19 PM Ticket #1629 (Use <label> instead of javascript for text associated with radio buttons) closed by Nicklas Nordborg
fixed: (In [5812]) Fixes #1629: Use <label> instead of javascript for text …
4:19 PM Changeset [5812] by Nicklas Nordborg
Fixes #1629: Use <label> instead of javascript for text associated …
11:19 AM Ticket #1628 (Use :hover instead of onMouseEnter/onMouseLeave) closed by Nicklas Nordborg
fixed: (In [5811]) Fixes #1628: Use :hover instead of …
11:19 AM Changeset [5811] by Nicklas Nordborg
Fixes #1628: Use :hover instead of onMouseEnter/onMouseLeave * …
10:45 AM Changeset [5810] by Nicklas Nordborg
References #1628: Use :hover instead of onMouseEnter/onMouseLeave …
10:38 AM Changeset [5809] by Nicklas Nordborg
References #1628: Use :hover instead of onMouseEnter/onMouseLeave …
9:15 AM Changeset [5808] by Nicklas Nordborg
References #1628: Use :hover instead of onMouseEnter/onMouseLeave …
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