Changes between Initial Version and Version 1 of Picard/notes3


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Timestamp:
Jan 20, 2015, 8:25:57 AM (7 years ago)
Author:
nicklas
Comment:

Notes about Picard 1.128-3

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  • Picard/notes3

    v1 v1  
     1
     2 1. Command line to start Picard has changed. Use:
     3    * `java -jar picard.jar <tool> <parameters>`
     4  instead of:
     5    * `java -jar <tool>.jar <parameters>`
     6
     7 2. To skip writing files for unmapped reads (FASTQ when using !IlluminaBasecallsToFastq or SAM/BAM when using !IlluminaBasecallsToSam), leave out the line with 'N' mapping in the multiplex parameters file.
     8
     9 3. GZIP compression level can now be set with COMPRESSION_LEVEL command line parameter. Accepted values are 1-9.