source: branches/uk_ac_ebi_Tab2MageImporter/jsp/input.html @ 486

Last change on this file since 486 was 486, checked in by mbayer, 14 years ago

first commit of this branch

  • have added JSP page for custom input.html to take parameters that allows the plugin to configure an entire experiment itself
  • have modified the plugin class to take the parameters and print them out -- normal input disabled right now
  • build file modified slightly -- new targets included etc
File size: 3.5 KB
Line 
1<!DOCTYPE html PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd">
2<html>
3<head>
4<meta http-equiv="Content-Type" content="text/html; charset=ISO-8859-1">
5<title>Tab2MAGE Importer -- Experiment Configuration</title>
6
7<style type="text/css">   
8table   {border-color: #6E94B7;border-style: solid; border-width: 1px;border-collapse: collapse}
9tr {border-color: #6E94B7;border-style: solid;border-width: 1px}
10</style>
11
12</head>
13<body>
14
15<h2>Tab2MAGE Importer -- Experiment Configuration</h2>
16
17Please configure your experiment for upload by answering the questions below.
18<br>
19The answers you provide will be used to automatically create a new experiment in BASE and your raw data will be imported
20into this.
21<p>
22<form>
23<table cellpadding="15">
24
25
26  <tr>
27  <td>Please select the zip file on your local disk that contains the data files for import:</td>
28    <td><INPUT type="file" name="parameter:zipFile" size="50"></td>
29  </tr>
30
31
32  <!-- question 1 -->
33  <tr style="border-color: #6E94B7;border-style: solid;border-width: 1px">
34    <td>Please select the microarray platform used in the experiment:</td>
35    <td>
36    <select name="parameter:platform">
37    </select>
38    </td>
39  </tr>
40
41  <!-- question 2 -->
42  <tr>
43    <td>Please enter the name of the experimental organism:</td>
44    <td><input type="text" size="50" name="parameter:organism"/></td>
45  </tr>
46
47  <!-- question 3 -->
48  <tr>
49    <td>How many different arrays designs were used ?</td>
50    <td><input type="text" size="3" name="parameter:numDesigns"/></td>
51  </tr>
52
53  <!-- question 4 -->
54  <tr>
55    <td>Was dye-swap used?</td>
56    <td>yes <input type="radio" name="parameter:dyeswap" value="yes"> no <input type="radio" name="parameter:dyeswap" value="no">
57    <br>
58    </td>
59  </tr>
60
61  <!-- question 5 -->
62  <tr>
63    <td>Was a reference sample used?</td>
64    <td>yes <input type="radio" name="parameter:refSample" value="yes"> no <input type="radio" name="parameter:refSample"
65      value="no"></td>
66  </tr>
67
68  <!-- question 6 -->
69  <tr>
70    <td>How many study groups (= treatment groups) were defined in the experiment?</td>
71    <td><input type="text" size="3" name="parameter:numTreatments"/></td>
72  </tr>
73
74  <!-- question 7 -->
75  <tr>
76    <td>What were the study factors (= independent variables /experimental factors) ?
77    <p>List Study Factors and Value ranges using the following format (one per line):<br>
78    Factor 1(value1,value2,...valueN)<br>
79    Factor 2(value1,value2,...valueN)
80    <p>Example: <br>Compound(aspirin,ibuprofen,acetaminophen)
81                  <br>Dose(control,low,medium,high)
82    </td>
83    <td><textarea rows="8" cols="40" name="parameter:expFactors"></textarea></td>
84  </tr>
85
86  <!-- question 8 -->
87  <tr>
88    <td>How many subjects per study group (i.e. number of biological replicates)?</td>
89    <td><input type="text" size="3" name="parameter:numReplicates"/></td>
90  </tr>
91  <!-- question 9 -->
92  <tr>
93    <td>List all target tissues (as a comma separated list).<br>
94    Example: liver,heart,adipose tissue
95    </td>
96    <td><textarea rows="8" cols="40" name="parameter:tissues"></textarea></td>
97  </tr>
98  <!-- question 10 -->
99  <tr>
100    <td>Were samples pooled?</td>
101    <td>yes <input type="radio" name="parameter:pooling" value="yes"> no <input type="radio" name="parameter:pooling" value="no">
102    </td>
103  </tr>
104
105  <tr>
106    <td colspan="2" align="center">
107    <p><input type="submit" value="Continue" name="continue"/> &nbsp; &nbsp; &nbsp; 
108    </p>
109
110    <input type="submit" value="Cancel" name="cancel" />
111    </form>
112    </td>
113  </tr>
114
115
116</table>
117
118
119
120</body>
121</html>
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