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| 2 | <html> |
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| 4 | <meta http-equiv="Content-Type" content="text/html; charset=ISO-8859-1"> |
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| 5 | <title>Tab2MAGE Importer -- Experiment Configuration</title> |
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| 6 | |
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| 7 | <style type="text/css"> |
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| 8 | table {border-color: #6E94B7;border-style: solid; border-width: 1px;border-collapse: collapse} |
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| 10 | </style> |
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| 11 | |
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| 12 | </head> |
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| 13 | <body> |
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| 14 | |
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| 15 | <h2>Tab2MAGE Importer -- Experiment Configuration</h2> |
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| 16 | |
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| 17 | Please configure your experiment for upload by answering the questions below. |
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| 18 | <br> |
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| 19 | The answers you provide will be used to automatically create a new experiment in BASE and your raw data will be imported |
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| 20 | into this. |
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| 21 | <p> |
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| 22 | <form> |
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| 23 | <table cellpadding="15"> |
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| 24 | |
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| 25 | |
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| 26 | <tr> |
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| 27 | <td>Please select the zip file on your local disk that contains the data files for import:</td> |
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| 28 | <td><INPUT type="file" name="parameter:zipFile" size="50"></td> |
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| 29 | </tr> |
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| 30 | |
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| 31 | |
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| 32 | <!-- question 1 --> |
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| 33 | <tr style="border-color: #6E94B7;border-style: solid;border-width: 1px"> |
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| 34 | <td>Please select the microarray platform used in the experiment:</td> |
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| 35 | <td> |
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| 36 | <select name="parameter:platform"> |
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| 37 | </select> |
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| 38 | </td> |
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| 39 | </tr> |
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| 40 | |
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| 41 | <!-- question 2 --> |
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| 42 | <tr> |
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| 43 | <td>Please enter the name of the experimental organism:</td> |
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| 44 | <td><input type="text" size="50" name="parameter:organism"/></td> |
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| 45 | </tr> |
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| 46 | |
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| 47 | <!-- question 3 --> |
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| 48 | <tr> |
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| 49 | <td>How many different arrays designs were used ?</td> |
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| 50 | <td><input type="text" size="3" name="parameter:numDesigns"/></td> |
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| 51 | </tr> |
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| 52 | |
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| 53 | <!-- question 4 --> |
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| 54 | <tr> |
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| 55 | <td>Was dye-swap used?</td> |
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| 56 | <td>yes <input type="radio" name="parameter:dyeswap" value="yes"> no <input type="radio" name="parameter:dyeswap" value="no"> |
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| 57 | <br> |
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| 58 | </td> |
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| 59 | </tr> |
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| 60 | |
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| 61 | <!-- question 5 --> |
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| 62 | <tr> |
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| 63 | <td>Was a reference sample used?</td> |
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| 64 | <td>yes <input type="radio" name="parameter:refSample" value="yes"> no <input type="radio" name="parameter:refSample" |
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| 65 | value="no"></td> |
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| 66 | </tr> |
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| 67 | |
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| 68 | <!-- question 6 --> |
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| 69 | <tr> |
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| 70 | <td>How many study groups (= treatment groups) were defined in the experiment?</td> |
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| 71 | <td><input type="text" size="3" name="parameter:numTreatments"/></td> |
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| 72 | </tr> |
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| 73 | |
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| 74 | <!-- question 7 --> |
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| 75 | <tr> |
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| 76 | <td>What were the study factors (= independent variables /experimental factors) ? |
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| 77 | <p>List Study Factors and Value ranges using the following format (one per line):<br> |
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| 78 | Factor 1(value1,value2,...valueN)<br> |
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| 79 | Factor 2(value1,value2,...valueN) |
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| 80 | <p>Example: <br>Compound(aspirin,ibuprofen,acetaminophen) |
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| 81 | <br>Dose(control,low,medium,high) |
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| 82 | </td> |
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| 83 | <td><textarea rows="8" cols="40" name="parameter:expFactors"></textarea></td> |
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| 84 | </tr> |
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| 85 | |
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| 86 | <!-- question 8 --> |
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| 87 | <tr> |
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| 88 | <td>How many subjects per study group (i.e. number of biological replicates)?</td> |
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| 89 | <td><input type="text" size="3" name="parameter:numReplicates"/></td> |
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| 90 | </tr> |
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| 91 | <!-- question 9 --> |
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| 92 | <tr> |
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| 93 | <td>List all target tissues (as a comma separated list).<br> |
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| 94 | Example: liver,heart,adipose tissue |
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| 95 | </td> |
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| 96 | <td><textarea rows="8" cols="40" name="parameter:tissues"></textarea></td> |
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| 97 | </tr> |
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| 98 | <!-- question 10 --> |
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| 99 | <tr> |
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| 100 | <td>Were samples pooled?</td> |
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| 101 | <td>yes <input type="radio" name="parameter:pooling" value="yes"> no <input type="radio" name="parameter:pooling" value="no"> |
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| 102 | </td> |
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| 103 | </tr> |
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| 104 | |
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| 105 | <tr> |
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| 106 | <td colspan="2" align="center"> |
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| 107 | <p><input type="submit" value="Continue" name="continue"/> |
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| 108 | </p> |
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| 109 | |
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| 110 | <input type="submit" value="Cancel" name="cancel" /> |
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| 111 | </form> |
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| 112 | </td> |
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| 113 | </tr> |
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| 114 | |
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| 115 | |
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| 116 | </table> |
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| 118 | |
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| 119 | |
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| 120 | </body> |
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| 121 | </html> |
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