source: extensions/net.sf.basedb.genepattern/trunk/META-INF/extensions.xml @ 1132

Last change on this file since 1132 was 1132, checked in by Nicklas Nordborg, 12 years ago

References #234: Proof-of-concept: run a selected GenePattern? visualization module from BASE

This is a first attempt to run a visualization module. The main procedure is work and the really hard parts (starting the visualization applet with correct parameters and support files) have been done. But don't expect this to work outside of my development machine yet.

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  • Property svn:keywords set to Date Id
File size: 2.6 KB
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1<?xml version="1.0" encoding="UTF-8" ?>
2<extensions xmlns="http://base.thep.lu.se/extensions.xsd">
3  <about>
4    <name>GenePattern integration package</name>
5    <description>
6      This package adds the possibility to use a GenePattern
7      server for analysis of data in BASE. BASE plug-ins are
8      used to send data to the GenePattern server and the
9      result files are imported back into BASE.
10    </description>
11    <version>1.0</version>
12    <url>http://baseplugins.thep.lu.se/wiki/net.sf.basedb.genepattern</url>
13  </about>
14  <extension
15    id="net.sf.basedb.genepattern.options"
16    extends="net.sf.basedb.clients.web.menu.extensions"
17    >
18    <index>2</index>
19    <about>
20      <name>GenePattern options</name>
21      <description>
22        Opens a dialog where a user can specify which GenePattern server
23        to use and their login and password.
24      </description>
25    </about>
26    <action-factory>
27      <factory-class>
28        net.sf.basedb.clients.web.extensions.menu.FixedMenuItemFactory
29      </factory-class>
30      <parameters>
31        <title>GenePattern options&amp;hellip;</title>
32        <tooltip>Specify the GenePattern server and login/password.</tooltip>
33        <onClick>Main.openPopup('$HOME$/options.jsp?ID='+getSessionId(), 'GenePatternOptions', 500, 400)</onClick>
34        <icon>~/images/genepattern.gif</icon>
35      </parameters>
36    </action-factory>
37  </extension>
38  <extension
39    id="net.sf.basedb.genepattern.test"
40    extends="net.sf.basedb.clients.web.menu.extensions"
41    >
42    <index>3</index>
43    <about>
44      <name>GenePattern test</name>
45      <description>
46        A simple test
47      </description>
48    </about>
49    <action-factory>
50      <factory-class>
51        net.sf.basedb.clients.web.extensions.menu.FixedMenuItemFactory
52      </factory-class>
53      <parameters>
54        <title>GenePattern test&amp;hellip;</title>
55        <tooltip>Specify the GenePattern server and login/password.</tooltip>
56        <onClick>Main.openPopup('$HOME$/Test.servlet?ID='+getSessionId(), 'GenePatternTest', 500, 400)</onClick>
57        <icon>~/images/genepattern.gif</icon>
58      </parameters>
59    </action-factory>
60  </extension>
61  <extension
62    id="net.sf.basedb.genepattern.visualizer"
63    extends="net.sf.basedb.clients.web.menu.extensions"
64    >
65    <index>4</index>
66    <about>
67      <name>Visualizer test</name>
68      <description>
69        A simple test of a visualizer
70      </description>
71    </about>
72    <action-factory>
73      <factory-class>
74        net.sf.basedb.clients.web.extensions.menu.FixedMenuItemFactory
75      </factory-class>
76      <parameters>
77        <title>Visualizer test&amp;hellip;</title>
78        <onClick>Main.openPopup('$HOME$/test_visualizer.jsp?ID='+getSessionId(), 'VisualizerTest', 500, 400)</onClick>
79        <icon>~/images/genepattern.gif</icon>
80      </parameters>
81    </action-factory>
82  </extension>
83</extensions>
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