source: extensions/net.sf.basedb.genepattern/trunk/META-INF/extensions.xml @ 1134

<?xml version="1.0" encoding="UTF-8" ?>
<extensions xmlns="http://base.thep.lu.se/extensions.xsd">
  <about>
    <name>GenePattern integration package</name>
    <description>
      This package adds the possibility to use a GenePattern
      server for analysis of data in BASE. BASE plug-ins are
      used to send data to the GenePattern server and the
      result files are imported back into BASE.
    </description>
    <version>1.0</version>
    <url>http://baseplugins.thep.lu.se/wiki/net.sf.basedb.genepattern</url>
  </about>
  <extension
    id="net.sf.basedb.genepattern.options"
    extends="net.sf.basedb.clients.web.menu.extensions"
    >
    <index>2</index>
    <about>
      <name>GenePattern options</name>
      <description>
        Opens a dialog where a user can specify which GenePattern server
        to use and their login and password.
      </description>
    </about>
    <action-factory>
      <factory-class>
        net.sf.basedb.clients.web.extensions.menu.FixedMenuItemFactory
      </factory-class>
      <parameters>
        <title>GenePattern options&amp;hellip;</title>
        <tooltip>Specify the GenePattern server and login/password.</tooltip>
        <onClick>Main.openPopup('$HOME$/options.jsp?ID='+getSessionId(), 'GenePatternOptions', 500, 400)</onClick>
        <icon>~/images/genepattern.gif</icon>
      </parameters>
    </action-factory>
  </extension>
  <extension
    id="net.sf.basedb.genepattern.test"
    extends="net.sf.basedb.clients.web.menu.extensions"
    >
    <index>3</index>
    <about>
      <name>GenePattern test</name>
      <description>
        A simple test
      </description>
    </about>
    <action-factory>
      <factory-class>
        net.sf.basedb.clients.web.extensions.menu.FixedMenuItemFactory
      </factory-class>
      <parameters>
        <title>GenePattern test&amp;hellip;</title>
        <tooltip>Specify the GenePattern server and login/password.</tooltip>
        <onClick>Main.openPopup('$HOME$/Test.servlet?ID='+getSessionId(), 'GenePatternTest', 500, 400)</onClick>
        <icon>~/images/genepattern.gif</icon>
      </parameters>
    </action-factory>
  </extension>
  <extension
    id="net.sf.basedb.genepattern.visualizer"
    extends="net.sf.basedb.clients.web.toolbar.item.bioassayset"
    >
    <index>1</index>
    <about>
      <name>GenePattern Visualizer</name>
      <description>
        Runs a GenePattern visualizer module.
      </description>
    </about>
    <action-factory>
      <factory-class>
        net.sf.basedb.clients.web.extensions.toolbar.FixedButtonFactory
      </factory-class>
      <parameters>
        <title>GenePattern visualizer&amp;hellip;</title>
        <onClick>Main.openPopup('$HOME$/run_visualizer.jsp?ID='+getSessionId(), 'GPVisualizer', 800, 600)</onClick>
        <icon>~/images/genepattern.gif</icon>
        <tooltip>Runs a GenePattern visualizer module with data from this bioassay set</tooltip>
      </parameters>
    </action-factory>
  </extension>
</extensions>