source: extensions/net.sf.basedb.genepattern/trunk/build.xml @ 1110

<?xml version="1.0" encoding="UTF-8"?>
<project 
  name="GenePattern" 
  default="jar" 
  basedir=".">

  <!--create this file if you need to override values from properties below -->
  <property file="build.properties" />
  
  <!-- variables used -->
  <property name="name" value="gp-integration" />
  <property name="version" value="1.0pre" />
  <property name="src" location="src" description="Location of source files" />
  <property name="build" location="build" description="Location of compiled files" />
  <property name="jar.name" value="${name}.jar" 
    description="Name of JAR file with the extensions." />
  <property name="tar.prefix" value="${name}-${version}" 
    description="Prefix of .tar.gz file for download." />
  <property name="tar.name" value="${tar.prefix}.tar.gz" 
    description="Full name of .tar.gz file for download." />
  <property name="javac.arg" value="-Xlint:unchecked" />
  <property name="javac.source" value="1.5" />
  <property name="javac.target" value="1.5" />
  <property name="javac.encoding" value="UTF-8" />
  <property name="depend.jars" value="http://base2.thep.lu.se/base/jars/2.12.0" />
  <property name="genepattern.jars" value="http://genepattern.broad.mit.edu/gp/downloads" />

  <!-- set up classpath for compiling -->
  <path id="classpath">
    <fileset dir="lib">
      <include name="**/*.jar" />
    </fileset>
  </path>

  <target name="init">
    <mkdir dir="${build}" />
  </target>
    
  <target name="clean">
    <delete failonerror="false" includeemptydirs="true">
      <fileset dir="${build}" defaultexcludes="no" />
      <fileset file="${jar.name}" />
      <fileset file="${tar.name}" />
    </delete>
  </target>
  
  <target
    name="package"
    depends="clean,jar"
    description="Clean and create binary distribution package"
    >
    <tar
      destfile="${tar.name}"
      longfile="gnu"
      compression="gzip"
      >
      <tarfileset
        dir="."
        prefix="${tar.prefix}"
        preserveLeadingSlashes="true"
        includes="${jar.name},README,LICENSE*,lib/genepattern/*"
        excludes="lib/genepattern/GenePattern.jar,lib/genepattern/gp-modules.jar"
        >
      </tarfileset>
    </tar>
  </target> 
  
  <target 
    name="jar"
    depends="build"
    description="Creates the extension JAR file"
    >
    <copy todir="${build}">
      <fileset dir="." includes="META-INF/*" />
    </copy>
    <replace token="%%plugins.jar%%" value="${jar.name}" file="${build}/META-INF/base-plugins.xml" />
    <jar 
      jarfile="${jar.name}" 
      manifest="${build}/META-INF/MANIFEST.MF"
      >
      <fileset dir="${build}" />
      <fileset dir="." includes="resources/**" />
    </jar>
  </target>
  
  <target 
    name="build"
    depends="init,checkjar"
    description="Compiles the plugin and put in jar"
    >
    <mkdir dir="${build}" />
    <javac 
      encoding="${javac.encoding}" 
      srcdir="${src}" 
      destdir="${build}" 
      debug="true" 
      classpathref="classpath"
      source="${javac.source}"
      target="${javac.target}"
      >
      <compilerarg value="${javac.arg}" />
    </javac>
  </target>
  
  <target 
    name="checkjar"
    description="Checks that the BASE2Core.jar, BASE2Webclient.jar, BASE2CorePlugins.jar and BASE2WSClient.jar exists."
    >
    <available classname="net.sf.basedb.util.export.spotdata.AbstractBioAssaySetExporter" 
      classpathref="classpath" property="base2core" />
    <available classname="net.sf.basedb.plugins.util.Parameters" 
      classpathref="classpath" property="base2plugins" />
    <available classname="net.sf.basedb.clients.web.extensions.toolbar.FixedButtonFactory" 
      classpathref="classpath" property="base2web" />
    <available classname="net.sf.basedb.info.BioAssaySetInfo" 
      classpathref="classpath" property="base2webservice" />
    <available classname="org.genepattern.client.GPClient"
      classpathref="classpath" property="genepattern.lib" />
    <fail unless="base2core" message="Can't find BASE2Core.jar in ./lib/compile. Try 'ant download-lib' to download the missing file." />
    <fail unless="base2plugins" message="Can't find BASE2CorePlugins.jar in ./lib/compile. Try 'ant download-lib' to download the missing file." />
    <fail unless="base2web" message="Can't find BASE2Webclient.jar in ./lib/compile. Try 'ant download-lib' to download the missing file." />
    <fail unless="base2webservice" message="Can't find BASE2WSClient.jar in ./lib/compile. Try 'ant download-lib' to download the missing file." />
    <fail unless="genepattern.lib" message="Can't find GenePattern.jar in ./lib/genepattern. Try 'ant download-lib' to download the missing file." />
    <echo>Found all required BASE and GenePattern JAR files.</echo>
  </target>
  
  <target 
    name="download-lib"
    description="Download BASE and GenePattern JAR files"
    >
    <echo>
-------------------------------------------------------   
NOTE! You may specifiy a different download location by 
creating the file './build.properties' and setting
'depend.jars' and 'genepattern.jars' to the URLs to 
download from.
-------------------------------------------------------
    </echo>
    <download-lib file="BASE2Core.jar" />
    <download-lib file="BASE2CorePlugins.jar" />
    <download-lib file="BASE2Webclient.jar" />
    <download-lib file="BASE2WSClient.jar" />
    <!-- We only need some files from the GenePattern.zip file -->
    <download-lib file="GenePattern.zip" todir="${build}" from="${genepattern.jars}" />
    <unzip dest="lib/genepattern" src="${build}/GenePattern.zip">
      <patternset>
        <include name="GenePattern.jar" />
        <include name="lib/gp-modules.jar" />
      </patternset>
      <mapper type="flatten"/>
    </unzip>
  </target>
  
  <macrodef name="download-lib" description="Download BASE core JAR files">
    <attribute name="file" />
    <attribute name="todir" default="lib/compile"/>
    <attribute name="from" default="${depend.jars}" />
    <sequential>
      <get 
        dest="@{todir}/@{file}" 
        src="@{from}/@{file}" 
        usetimestamp="true" 
        verbose="true"
        ignoreerrors="true"
      />
    </sequential>
  </macrodef>
</project>