1 | <?xml version="1.0" encoding="UTF-8" ?> |
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2 | <extensions xmlns="http://base.thep.lu.se/extensions.xsd"> |
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3 | <about> |
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4 | <name>MEV Launcher package</name> |
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5 | <description> |
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6 | This package adds the possibility to launch the MEV |
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7 | application with Java web start and automatically have |
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8 | it import data from the current bioassay set. |
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9 | </description> |
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10 | <version>1.8</version> |
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11 | <copyright>BASE development team</copyright> |
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12 | <email>basedb-users@lists.sourceforge.net</email> |
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13 | <url>http://baseplugins.thep.lu.se/wiki/net.sf.basedb.mev</url> |
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14 | <min-base-version>3.0.0</min-base-version> |
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15 | </about> |
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16 | <plugin-definition id="PackageInstaller"> |
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17 | <about> |
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18 | <name>MeV package installer</name> |
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19 | <description> |
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20 | This plug-in will install required data files types, etc. that |
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21 | are required to use the MeV launcher and plug-ins. Start the installation by |
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22 | selecting this plug-in from the list at Administrate -> Plugins -> Definitions. |
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23 | Then click on the 'Run plugin' button. |
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24 | </description> |
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25 | </about> |
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26 | <plugin-class>net.sf.basedb.mev.install.Install</plugin-class> |
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27 | <settings> |
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28 | <property name="immediate-execution">1</property> |
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29 | </settings> |
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30 | </plugin-definition> |
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31 | <plugin-definition id="CghExporterPlugin"> |
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32 | <about> |
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33 | <name>MeV CGH exporter</name> |
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34 | <description> |
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35 | MeV CGH exporter Comparative Genomic Hybridization exporter for bioassay set data. |
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36 | The resulting file can be opened in MeV for further analysis. |
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37 | </description> |
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38 | </about> |
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39 | <plugin-class>net.sf.basedb.mev.plugin.CghExporterPlugin</plugin-class> |
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40 | <settings> |
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41 | <property name="everyone-use">1</property> |
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42 | </settings> |
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43 | </plugin-definition> |
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44 | <plugin-definition id="TdmsExporterPlugin"> |
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45 | <about> |
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46 | <name>MeV TDMS exporter</name> |
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47 | <description> |
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48 | Tab-delimited Multiple Sample exporter for bioassay set data. |
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49 | The resulting file can be opened in MeV for further analysis. |
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50 | </description> |
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51 | </about> |
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52 | <plugin-class>net.sf.basedb.mev.plugin.TdmsExporterPlugin</plugin-class> |
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53 | <settings> |
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54 | <property name="everyone-use">1</property> |
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55 | </settings> |
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56 | </plugin-definition> |
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57 | <extension |
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58 | id="net.sf.basedb.mev.launchmev" |
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59 | extends="net.sf.basedb.clients.web.bioassayset.list.tools" |
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60 | > |
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61 | <index>1</index> |
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62 | <about> |
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63 | <name>MeV Launcher</name> |
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64 | <description> |
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65 | Adds an action to the "Tools" column that starts MeV using Java |
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66 | web start and automatically loads data from the current bioassay |
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67 | set. The bioassay set must have a MeV TDMS file attached to it. |
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68 | </description> |
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69 | </about> |
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70 | <action-factory> |
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71 | <factory-class> |
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72 | net.sf.basedb.mev.factory.MevButtonFactory |
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73 | </factory-class> |
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74 | <parameters> |
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75 | <title>Start MeV</title> |
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76 | <tooltip> |
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77 | Launch MeV with data from this bioassay set. If |
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78 | you have not yet created any MeV file you will be |
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79 | given the option to do so. |
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80 | </tooltip> |
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81 | <onClick>MeV.launch($ID$)</onClick> |
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82 | <icon>~/images/tm4.png</icon> |
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83 | <script>~/scripts/mev.jsp</script> |
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84 | </parameters> |
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85 | </action-factory> |
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86 | </extension> |
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87 | <extension |
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88 | id="net.sf.basedb.mev.options" |
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89 | extends="net.sf.basedb.clients.web.menu.extensions" |
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90 | > |
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91 | <index>1</index> |
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92 | <about> |
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93 | <name>MeV Launcher options</name> |
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94 | <description> |
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95 | Opens a dialog where a user can specify options for the MeV Launcher |
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96 | </description> |
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97 | </about> |
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98 | <action-factory> |
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99 | <factory-class> |
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100 | net.sf.basedb.clients.web.extensions.menu.FixedMenuItemFactory |
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101 | </factory-class> |
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102 | <parameters> |
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103 | <title>MeV Launcher options&hellip;</title> |
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104 | <tooltip>Specify options for the MeV Launcher</tooltip> |
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105 | <onClick>Main.openPopup('$HOME$/options.jsp?ID='+getSessionId(), 'MeVLauncherOptions', 500, 400)</onClick> |
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106 | <icon>~/images/tm4.png</icon> |
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107 | </parameters> |
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108 | </action-factory> |
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109 | </extension> |
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110 | </extensions> |
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