source: extensions/net.sf.basedb.mev/trunk/resources/mev_jnlp.jsp @ 1163

<%-- $Id: mev_jnlp.jsp 1163 2009-09-22 11:52:00Z nicklas $
  ------------------------------------------------------------------
  Copyright (C) 2007 Jari Häkkinen
  Copyright (C) 2009 Nicklas Nordborg

  This file is part of BASE - BioArray Software Environment.
  Available at http://base.thep.lu.se/

  BASE is free software; you can redistribute it and/or
  modify it under the terms of the GNU General Public License
  as published by the Free Software Foundation; either version 2
  of the License, or (at your option) any later version.

  BASE is distributed in the hope that it will be useful,
  but WITHOUT ANY WARRANTY; without even the implied warranty of
  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
  GNU General Public License for more details.

  You should have received a copy of the GNU General Public License
  along with this program; if not, write to the Free Software
  Foundation, Inc., 59 Temple Place - Suite 330,
  Boston, MA  02111-1307, USA.
  ------------------------------------------------------------------

  @author Jari, Nicklas
--%>
<%@ page 
  pageEncoding="UTF-8"
  contentType="application/x-java-jnlp-file"
  session="false"
  import="net.sf.basedb.core.SessionControl"
  import="net.sf.basedb.core.DbControl"
  import="net.sf.basedb.core.BioAssaySet"
  import="net.sf.basedb.core.File"
  import="net.sf.basedb.core.FileStoreUtil"
  import="net.sf.basedb.core.ItemNotFoundException"
  import="net.sf.basedb.clients.web.Base"
  import="net.sf.basedb.clients.web.extensions.ExtensionsControl"
  import="net.sf.basedb.util.Values"
%>
<%
response.setHeader("Expires", "0");

final SessionControl sc = Base.getExistingSessionControl(request, true);
final String ID = sc.getId();
final int bioAssaySetId = Values.getInt(request.getParameter("bioassayset_id"));
final String fileType = Values.getString(request.getParameter("filetype"));
final String mevFileType = fileType.substring(4);
final String scheme = request.getScheme();
final String serverName = request.getServerName();
final int serverPort = request.getServerPort();
final String homePath = ExtensionsControl.getHomeUrl("net.sf.basedb.mev.launchmev");
final String servletPath = ExtensionsControl.getServletUrl("net.sf.basedb.mev.launchmev", "");
final String serverUrl = scheme + "://" + serverName + ":" + serverPort;
final int jvmMaxMemory = Values.getInt(sc.getUserClientSetting("net.sf.basedb.mev.launchmev.jvm.maxmemory"), 512);
String filePath = "";
DbControl dc = sc.newDbControl();
try
{
  BioAssaySet bas = BioAssaySet.getById(dc, bioAssaySetId);
  File mevFile = FileStoreUtil.getDataFile(dc, bas, fileType);
  if (mevFile == null)
  {
    throw new ItemNotFoundException("No " + fileType + " file found on bioassay set: " + 
      bas.getName());
  }
  filePath = mevFile.getPath().toURLString("UTF-8");
}
finally
{
  if (dc != null) dc.close();
}
out.clearBuffer();
%><?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE jnlp PUBLIC "-//Sun Microsystems, Inc.//DTD JNLP 1.5//EN" "http://www.netbeans.org/jnlp/DTD/jnlp.dtd">
<jnlp spec="1.0+"
  codebase="<%=serverUrl + homePath%>/jar"
  version="4.4.1">

  <information>
    <title>MeV: MultiExperiment Viewer</title>
    <vendor>http://www.tm4.org</vendor>
    <homepage href="http://www.tm4.org"/>
  </information>

  <security>
    <all-permissions/>
  </security>

  <resources>
    <jar href="base-mev-wrapper.jar" /><!-- must be first since main class is here -->
    <jar href="mev-base.jar"/> 
    <jar href="mev-algorithm-impl.jar"/>
    <jar href="mev-algorithm-support.jar"/>
    <jar href="mev-gui-impl.jar"/>
    <jar href="mev-gui-support.jar"/>
    <jar href="mev-util.jar"/>

    <jar href="args4j-2.0.9.jar"/>
    <jar href="base64.jar"/>
    <jar href="colt.jar"/>
    <jar href="comcgh.jar"/>
    <jar href="commons-net-1.4.1.jar"/>
    <jar href="dialogHelp.jar"/>
    <jar href="educgh.jar"/>
    <jar href="ftpbean.jar"/>
    <jar href="HTTPClient.jar"/>
    <jar href="images.jar"/>
    <jar href="j3daudio.jar"/>
    <jar href="j3dcore.jar"/>
    <jar href="j3dutils.jar"/>
    <jar href="jai_codec.jar"/>
    <jar href="jai_core.jar"/>
    <jar href="jama.jar"/>
    <jar href="jaxp.jar"/>
    <jar href="jbcl.jar"/>
    <jar href="jconn2.jar"/>
    <jar href="jdom-1.0.jar"/>
    <jar href="jfreechart-0.9.20.jar"/>
    <jar href="jfreechart-common-0.9.5.jar"/>
    <jar href="jsch-0.1.39.jar"/>
    <jar href="JSciCore.jar"/>
    <jar href="JSciPartial.jar"/>
    <jar href="magetab-parser.jar" />
    <jar href="normalization.jar"/>
    <jar href="piccolo.jar"/>
    <jar href="piccolox.jar"/>
    <jar href="servlet.jar"/>
    <jar href="soap.jar"/>
    <jar href="swing-layout-1.0.1.jar"/>
    <jar href="swingx-2006_10_27.jar"/>
    <jar href="tar.jar"/>
    <jar href="Text_JDBC30.jar"/>
    <jar href="vecmath.jar"/>
    <jar href="weka.jar"/>
    <jar href="xerces.jar"/>
    <jar href="xml-apis.jar"/>
    
    <extension name="mail" href="../others.jsp?mail"/>
    <extension name="goose" href="../others.jsp?goose"/>
    
    <j2se version="1.6.0+"
        max-heap-size="<%=jvmMaxMemory%>M"
        href="http://java.sun.com/products/autodl/j2se"
      />
  </resources>
  
  <application-desc main-class="net.sf.basedb.mev.webstart.StartMev">
    <argument>-base:servletdir</argument>
    <argument><%=serverUrl+servletPath%></argument>
    <argument>-base:session</argument>
    <argument><%=ID%></argument>
    <argument>-base:file</argument>
    <argument><%=filePath%></argument>
    <argument>-fileType</argument>
    <argument><%=mevFileType%></argument>
    <argument>-base:bioAssaySet</argument>
    <argument><%=bioAssaySetId%></argument>
  </application-desc>
</jnlp>