source: extensions/net.sf.basedb.reggie/branches/ticket-422/resources/libprep/cdna_registration.jsp @ 1762

<%@ page
  pageEncoding="UTF-8"
  session="false"
  import="net.sf.basedb.core.User"
  import="net.sf.basedb.core.DbControl"
  import="net.sf.basedb.core.SessionControl"
  import="net.sf.basedb.core.Application"
  import="net.sf.basedb.clients.web.Base" 
  import="net.sf.basedb.clients.web.util.HTML"  
  import="net.sf.basedb.clients.web.extensions.ExtensionsControl"
%>
<%@ taglib prefix="base" uri="/WEB-INF/base.tld" %>
<%@ taglib prefix="p" uri="/WEB-INF/path.tld" %>
<%
final SessionControl sc = Base.getExistingSessionControl(request, true);
final String ID = sc.getId();
final float scale = Base.getScale(sc);
final String home = ExtensionsControl.getHomeUrl("net.sf.basedb.reggie");
DbControl dc = null;
try
{
  dc = sc.newDbControl();
  final User user = User.getById(dc, sc.getLoggedInUserId());
%>
<base:page type="default" >
<base:head scripts="ajax.js" styles="path.css">
  <link rel="stylesheet" type="text/css" href="../css/reggie.css">
  <script language="JavaScript" src="../reggie.js" type="text/javascript" charset="UTF-8"></script>

<script language="JavaScript">
var debug = true;
var currentStep = 1;

var cdnaDateIsValid = false;

function init()
{
  var frm = document.forms['reggie'];
  var bioplates = getCDnaBioPlates();
  
  // Load existing cDNA plates not yet registered
  var plates = frm.bioplate;
  if (bioplates != null && bioplates.length > 0)
  {
    for (var i=0; i < bioplates.length; i++)
    {
      var bioplate = bioplates[i];
      var option = new Option(bioplate.name, bioplate.id);
      plates.options[plates.length] = option;
    }
    bioplateIsValid = true;
    setInputStatus('bioplate', '', 'valid');
  }
  else
  {
    var msg = 'No cDNA bioplates available for processing.';
    setFatalError(msg);
    return;
  }

  // Load cDNA protocols
  var cdnaProtocols = getProtocols('CDNA_PROTOCOL');
  for (var i = 0; i < cdnaProtocols.length; i++)
  {
    var protocol = cdnaProtocols[i];
    frm.cdnaProtocol[frm.cdnaProtocol.length] = new Option(protocol.name, protocol.id, protocol.isDefault);
    setInputStatus('cdnaProtocol', '', 'valid');
  }
  if (frm.cdnaProtocol.length == 0)
  {
    frm.cdnaProtocol[0] = new Option('- none -', '');
  }
  
  frm.cdnaDate.focus();
  Main.show('gocreate');
}

function getCDnaBioPlates()
{
  var frm = document.forms['reggie']; 
  
  var request = Ajax.getXmlHttpRequest();
  try
  {
    showLoadingAnimation('Loading histology work lists...');
    var url = '../MRna.servlet?ID=<%=ID%>&cmd=GetUnprocessedPlates&plateType=CDNA';   
    request.open("GET", url, false);  
    request.send(null);
  }
  finally
  {
    hideLoadingAnimation();
  }
  
  if (debug) Main.debug(request.responseText);
  var response = JSON.parse(request.responseText);  
  if (response.status != 'ok')
  {
    setFatalError(response.message);
    return false;
  }
  return response.bioplates;
}

function getProtocols(subtype)
{
  var request = Ajax.getXmlHttpRequest();
  try
  {
    showLoadingAnimation('Loading ' + subtype + ' protocols...');
    var url = '../Protocol.servlet?ID=<%=ID%>&cmd=GetProtocols&subtype='+subtype;   
    request.open("GET", url, false);  
    request.send(null);
  }
  finally
  {
    hideLoadingAnimation();
  }

  if (debug) Main.debug(request.responseText);
  var response = JSON.parse(request.responseText);  
  if (response.status != 'ok')
  {
    setFatalError(response.message);
    return false;
  }
  return response.protocols;
}



function cdnaDateOnChange()
{
  var frm = document.forms['reggie'];
  cdnaDateIsValid = false;
  setInputStatus('cdnaDate', '', '');
  
  var cdnaDate = frm.cdnaDate.value;
  
  if (cdnaDate == '')
  {
    setInputStatus('cdnaDate', 'Missing', 'invalid');
    return;
  }

  // Auto-fill the date if it's only given with 4(MMdd) or 6(yyMMdd) digits.    
  cdnaDate = autoFillDate(cdnaDate);
  frm.cdnaDate.value = cdnaDate;
  
  if (!Dates.isDate(cdnaDate, 'yyyyMMdd'))
  {
    setInputStatus('cdnaDate', 'Not a valid date', 'invalid');
    return;
  }
  
  setInputStatus('cdnaDate', '', 'valid');
  cdnaDateIsValid = true;
}

function goRegister()
{
  if (!cdnaDateIsValid) return;

  var frm = document.forms['reggie'];
  
  Main.hide('goimport');

  frm.cdnaOperator.disabled = true;
  frm.cdnaProtocol.disabled = true;
  frm.cdnaDate.disabled = true;
  frm.bioplate.disabled = true;
  frm.comments.disabled = true;
  
  var submitInfo = {};
  submitInfo.bioplate = parseInt(frm.bioplate.value, 10);
  submitInfo.cdnaProtocol = parseInt(frm.cdnaProtocol.value, 10);
  submitInfo.cdnaDate = frm.cdnaDate.value;
  submitInfo.cdnaOperator = frm.cdnaOperator.value;
  submitInfo.comments = frm.comments.value;
  
  if (debug) Main.debug(JSON.stringify(submitInfo));
  var url = '../MRna.servlet?ID=<%=ID%>&cmd=ImportCDnaResults';
  
  var request = Ajax.getXmlHttpRequest();
  try
  {
    showLoadingAnimation('Importing...');
    request.open("POST", url, false);
    request.send(JSON.stringify(submitInfo));
  }
  finally
  {
    hideLoadingAnimation();
  }
  
  if (debug) Main.debug(request.responseText);
  var response = JSON.parse(request.responseText);
  
  if (response.messages && response.messages.length > 0)
  {
    var msg = '<ul>';
    for (var i = 0; i < response.messages.length; i++)
    {
      var msgLine = response.messages[i];
      if (msgLine.indexOf('[Warning]') >= 0)
      {
        msg += '<li class="warning">' + msgLine.replace('[Warning]', '');
      }
      else
      {
        msg += '<li>' + msgLine;
      }
    }
    msg += '</ul>';
    setInnerHTML('messages', msg);
    Main.show('messages');
  }
  
  if (response.status != 'ok')
  {
    Main.addClass(document.getElementById('messages'), 'failure');
    setFatalError(response.message);
    return false;
  }

  Main.show('done');
  Main.show('gorestart');
  
}


</script>

</base:head>
<base:body onload="init()">

  <p:path><p:pathelement 
    title="Reggie" href="<%="../index.jsp?ID="+ID%>" 
    /><p:pathelement title="cDNA registration" 
    /></p:path>

  <div class="content">
  <%
  if (sc.getActiveProjectId() == 0)
  {
    %>
    <div class="messagecontainer note" style="width: 950px; margin-left: 20px; margin-bottom: 20px; margin-right: 0px; font-weight: bold; color: #cc0000;">
      No project has been selected. You may proceed with the registration but 
      created items will not be shared.
    </div>
    <%
  }
  %>

  <form name="reggie" onsubmit="return false;">
  
  <table class="stepform">
  <tr>
    <td rowspan="3" class="stepno">1</td>
    <td class="steptitle">Select cDNA bioplate</td>
  </tr>
  <tr>
    <td class="stepfields">
      <table>
      <tr valign="top">
        <td class="prompt">cDNA bioplate</td>
        <td class="input"><select class="required" style="width:90%" 
            name="bioplate" id="bioplate"></select>
        </td>
        <td class="status" id="bioplate.status"></td>
        <td class="help"><span id="bioplate.message" class="message" style="display: none;"></span>
          Select an existing cDNA bioplate. The list contain all cDNA bioplates that
          has not yet been processed (determined by the absence of a 'creation' date).
        </td>
      </tr>
      <tr valign="top">
        <td class="prompt">Date</td>
        <td class="input">
          <input type="text" class="required" name="cdnaDate" value="" size="12" maxlength="10"
            onblur="cdnaDateOnChange()" onkeypress="focusOnEnter(event, 'cdnaProtocol')">
        </td>
        <td class="status" id="cdnaDate.status"></td>
        <td class="help">
          <span id="cdnaDate.message" class="message" style="display: none;"></span>(YYYYMMDD or MMDD)
        </td>
      </tr>
      <tr valign="top">
        <td class="prompt">Protocol</td>
        <td class="input"><select style="width:90%" name="cdnaProtocol" id="cdnaProtocol" 
          onkeypress="focusOnEnter(event, 'cdnaOperator')"></select></td>
        <td class="status" id="cdnaProtocol.status"></td>
        <td class="help"><span id="cdnaProtocol.message" class="message" style="display: none;"></span>
          Select the protocol which was used in the cDNA step.
        </td>
      </tr>
      <tr valign="top">
        <td class="prompt">Operator</td>
        <td class="input">
          <input type="text" name="cdnaOperator" value="<%=HTML.encodeTags(user.getName()) %>" 
            size="50" maxlength="255" onkeypress="focusOnEnter(event, 'comments')">
        </td>
        <td class="status" id="cdnaOperator.status"></td>
        <td class="help">
          <span id="cdnaOperator.message" class="message" style="display: none;"></span>
        </td>
      </tr>
      <tr valign="top">
        <td class="prompt">Comments</td>
        <td class="input"><textarea rows="4" cols="50" name="comments" value=""></textarea></td>
        <td class="status"></td>
        <td class="help">Comments about the cDNA processing.</td>
      </tr>
      </table>
    </td>
  </tr>
  </table>
  
  <div class="loading" id="loading" style="display: none;"><table><tr><td><img src="../images/loading.gif"></td><td id="loading.msg">Please wait...</td></tr></table></div>
  
  <div class="messagecontainer error" id="errorMessage" style="display: none; width: 950px; margin-left: 20px; margin-bottom: 0px;"></div>
  
  <div id="messages" class="success" style="display: none; width: 950px; margin-left: 20px; margin-top: 20px;"></div>
  
  <table style="margin-left: 20px; margin-top: 10px;" class="navigation">
    <tr>
      <td><base:button id="goimport" title="Register" image="<%=home+"/images/import.png"%>" onclick="goRegister()"/></td>
      <td><base:button id="gorestart" title="Restart" image="<%=home+"/images/goback.png"%>" onclick="goRestart(true)" style="display: none;"/></td>
      <td id="gonext.message" class="message"></td>
    </tr>
  </table>
  
  </form>
  </div>
  
</base:body>
</base:page>
<%
}
finally
{
  if (dc != null) dc.close();
}
%>