source: extensions/net.sf.basedb.reggie/trunk/META-INF/plugin-configurations.xml @ 1901

Last change on this file since 1901 was 1901, checked in by Nicklas Nordborg, 9 years ago

References #472: Export data to files needed for library preparation

Changed name of 384 plate to 'BioRad? Hard-shell 384'.

File size: 6.3 KB
Line 
1<?xml version="1.0" encoding="UTF-8"?>
2<!DOCTYPE configfile SYSTEM "plugin-configuration-file.dtd"><configfile>
3  <configuration pluginClassName="net.sf.basedb.reggie.plugins.CaliperRunParametersExporter">
4    <configname>High sensitivity</configname>
5    <description />
6    <parameter>
7      <name>DataPath</name>
8      <label>Data Path</label>
9      <description>Enter the path on the Caliper computer where data files should be saved.If not specified, the descision is left to the Caliper software.</description>
10      <class>java.lang.String</class>
11      <value>C:\CaliperFiles</value>
12    </parameter>
13    <parameter>
14      <name>sensitivity</name>
15      <label>Sensitivity</label>
16      <description>This parameter decide which RNA QC aliquots from the plate are selected for a specific run:
17Standard = extracts with QCHiSense=FALSE or missing are selected
18High = extracts with QCHiSense=TRUE are selected</description>
19      <class>java.lang.String</class>
20      <value>High</value>
21    </parameter>
22    <parameter>
23      <name>PlateName</name>
24      <label>Plate Name</label>
25      <description>Enter the name of the plate as it appears in the Run dialog in the Caliper software. If an incorrect name is used the exported file can't be used by Caliper.</description>
26      <class>java.lang.String</class>
27      <value>FrameStar Skirted 96 [sip 2mm]</value>
28    </parameter>
29    <parameter>
30      <name>AssayType</name>
31      <label>Assay Type</label>
32      <description>Enter the name of the Assay Type parameter as it appears in the Run dialog in the Caliper software. If an incorrect name is used the exported file can't be used by Caliper.</description>
33      <class>java.lang.String</class>
34      <value>HT RNA High Sens</value>
35    </parameter>
36  </configuration>
37  <configuration pluginClassName="net.sf.basedb.reggie.plugins.CaliperRunParametersExporter">
38    <configname>Standard sensitivity</configname>
39    <description />
40    <parameter>
41      <name>DataPath</name>
42      <label>Data Path</label>
43      <description>Enter the path on the Caliper computer where data files should be saved.If not specified, the descision is left to the Caliper software.</description>
44      <class>java.lang.String</class>
45      <value>C:\CaliperFiles</value>
46    </parameter>
47    <parameter>
48      <name>sensitivity</name>
49      <label>Sensitivity</label>
50      <description>This parameter decide which RNA QC aliquots from the plate are selected for a specific run:
51Standard = extracts without the QCHiSense annotation are selected
52High = extracts with QCHiSense=TRUE are selected</description>
53      <class>java.lang.String</class>
54      <value>Standard</value>
55    </parameter>
56    <parameter>
57      <name>PlateName</name>
58      <label>Plate Name</label>
59      <description>Enter the name of the plate as it appears in the Run dialog in the Caliper software. If an incorrect name is used the exported file can't be used by Caliper.</description>
60      <class>java.lang.String</class>
61      <value>FrameStar Skirted 96 [sip 2mm]</value>
62    </parameter>
63    <parameter>
64      <name>AssayType</name>
65      <label>Assay Type</label>
66      <description>Enter the name of the Assay Type paramter as it appears in the Run dialog in the Caliper software. If an incorrect name is used the exported file can't be used by Caliper.</description>
67      <class>java.lang.String</class>
68      <value>HT RNA Std Sens</value>
69    </parameter>
70  </configuration>
71  <configuration pluginClassName="net.sf.basedb.reggie.plugins.CaliperLibPrepParametersExporter">
72    <configname>HT DNA 1K Ver2 (96)</configname>
73    <description />
74    <parameter>
75      <name>DataPath</name>
76      <label>Data Path</label>
77      <description>Enter the path on the Caliper computer where data files should be saved.If not specified, the descision is left to the Caliper software.</description>
78      <class>java.lang.String</class>
79      <value>C:\CaliperLibFiles</value>
80    </parameter>
81    <parameter>
82      <name>PlateName</name>
83      <label>Plate Name</label>
84      <description>Enter the name of the plate as it appears in the Run dialog in the Caliper software. If an incorrect name is used the exported file can't be used by Caliper.</description>
85      <class>java.lang.String</class>
86      <value>FrameStar Skirted 96 [sip 2mm]</value>
87    </parameter>
88    <parameter>
89      <name>AssayType</name>
90      <label>Assay Type</label>
91      <description>Enter the name of the Assay Type parameter as it appears in the Run dialog in the Caliper software. If an incorrect name is used the exported file can't be used by Caliper.</description>
92      <class>java.lang.String</class>
93      <value>HT DNA 1K Ver2</value>
94    </parameter>
95  </configuration>
96  <configuration pluginClassName="net.sf.basedb.reggie.plugins.CaliperLibPrepParametersExporter">
97    <configname>HT DNA 1K Ver2 (384)</configname>
98    <description />
99    <parameter>
100      <name>DataPath</name>
101      <label>Data Path</label>
102      <description>Enter the path on the Caliper computer where data files should be saved.If not specified, the descision is left to the Caliper software.</description>
103      <class>java.lang.String</class>
104      <value>C:\CaliperLibFiles</value>
105    </parameter>
106    <parameter>
107      <name>PlateName</name>
108      <label>Plate Name</label>
109      <description>Enter the name of the plate as it appears in the Run dialog in the Caliper software. If an incorrect name is used the exported file can't be used by Caliper.</description>
110      <class>java.lang.String</class>
111      <value>BioRad Hard-shell 384</value>
112    </parameter>
113    <parameter>
114      <name>AssayType</name>
115      <label>Assay Type</label>
116      <description>Enter the name of the Assay Type parameter as it appears in the Run dialog in the Caliper software. If an incorrect name is used the exported file can't be used by Caliper.</description>
117      <class>java.lang.String</class>
118      <value>HT DNA 1K Ver2</value>
119    </parameter>
120    <parameter>
121      <name>RemapTo384</name>
122      <label>Uses 384-well plate</label>
123      <description>Enable this option if the extracts are placed on a 384-well plate. The coordinates are mapped so that every other row/colum is used. Eg. A1, A3 A5..., C1, C3, etc.</description>
124      <class>java.lang.Boolean</class>
125      <value>true</value>
126    </parameter>
127  </configuration>
128</configfile>
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