source: extensions/net.sf.basedb.reggie/trunk/resources/flaggedalignment/search.jsp @ 4818

<%@ page
  pageEncoding="UTF-8"
  session="false"
  import="net.sf.basedb.core.User"
  import="net.sf.basedb.core.DbControl"
  import="net.sf.basedb.core.SessionControl"
  import="net.sf.basedb.core.Application"
  import="net.sf.basedb.util.formatter.DateFormatter"
  import="net.sf.basedb.util.formatter.Formatter"
  import="net.sf.basedb.clients.web.Base" 
  import="net.sf.basedb.clients.web.extensions.ExtensionsControl"
  import="java.util.Date"
%>
<%@ taglib prefix="base" uri="/WEB-INF/base.tld" %>
<%@ taglib prefix="tbl" uri="/WEB-INF/table.tld" %>
<%@ taglib prefix="p" uri="/WEB-INF/path.tld" %>
<%
final SessionControl sc = Base.getExistingSessionControl(request, "net.sf.basedb.reggie", true);
final String ID = sc.getId();
final float scale = Base.getScale(sc);
final String home = ExtensionsControl.getHomeUrl("net.sf.basedb.reggie");
DbControl dc = null;
try
{
  dc = sc.newDbControl();
  final User user = User.getById(dc, sc.getLoggedInUserId());
%>
<base:page type="default" title="Flagged alignments wizard">
<base:head 
  scripts="~../reggie-2.js,~search.js" 
  styles="path.css,toolbar.css,~../css/reggie-2.css"
  >
<style>
#itemTable
{
  width: 100%; 
  border-collapse: collapse;
}

#itemTable thead
{
  border-bottom-width: 1px;
  border-top-width: 1px;
}

#itemTable thead th
{
  padding: 2px;
  text-align: left;
}

tbody.highlight
{
  border-top-width: 1px;
  border-top-style: dotted;
}

tr.dotted-above
{
  border-top-width: 1px;
  border-top-style: dotted;
}


#itemTable .highlight.evenrow
{
  border-top-color: transparent;
}

#itemTable tbody td
{
  padding: 2px;
  text-align: left;
}

.colormatched 
{
  background-color: #ffff00;
  outline: 1px solid #a8a800;
  margin: -1px;
  padding: 1px;
}

.colormatched-2
{
  background-color: #a8ffff;
  outline: 1px solid #66a8a8;
  margin: -1px;
  padding: 1px;
}

.text-col
{}

.text-col img
{
  float: right;
  margin-left: 2px;
}

#itemTable .icon-col
{
  text-align: right;
}

#itemTable .num-col
{
  text-align: center;
}
.text-col img.case-summary
{
  float: left;
  margin-right: 2px;
  margin-left: 0;
}

.bg-messages
{
  background-color: #f0f0f0;
}

.highlight:hover .bg-messages
{
  background-color: #e0e0e0;
  /* transistions copied from BASE to make it match */
  transition: all 0.3s ease 0.1s;
  -moz-transition: all 0.3s ease 0.1s;
  -webkit-transition: all 0.3s ease 0.1s;
}

.ignored-mismatch
{
  text-decoration-line: line-through;
}

.commonpart
{
  color: #666666;
  font-style: italic;
}

.diffpart
{
  font-weight: bold;
}

.mode-genotype, .mode-reprocess
{
  display:none;
}

table[data-mode=genotype] .mode-genotype
{
  display: table-cell;
}

table[data-mode=reprocess] .mode-reprocess
{
  display: table-cell;
}

table[data-mode=reprocess] thead.mode-reprocess
{
  display: table-header-group;
  border: 0;
}

td.mode-reprocess
{
  background-color: #fffff0;
}

.mode-reprocess-header
{
  background-color: #fffff0;
  border-width: 1px;
  font-size: 120%;
}

</style>
</base:head>
<base:body>

  <p:path><p:pathelement 
    title="Reggie" href="<%="../index.jsp?ID="+ID%>" 
    /><p:pathelement title="Flagged alignment wizard" 
    /></p:path>

  <div class="content">

  <form name="reggie" id="wizard" class="wizard">
  
  <div class="step auto-hide" id="step-1">
    <div class="step-no">1</div>
    <div class="step-title" id="step-1-title">Flagged alignments</div>
    <div class="step-content">

      <table class="step-form">
      <tr>
        <td class="prompt">Filter</td>
        <td>
          <label><input type="radio" name="filter" id="noFilter" checked>No filter</label>
          <label><input type="radio" name="filter" id="highHetFilter">High HET</label>
          <select name="qiaCubeFilter" id="qiaCubeFilter">
            <option value="">- QiaCube -</option>
          </select>
          
          <select name="libPlateFilter" id="libPlateFilter">
            <option value="">- LibPlate -</option>
          </select>
          
          <select name="recentFilters" id="recentFilters" style="display: none;">
            <option value="">- Recently used filters -</option>
          </select>
        </td>
      </tr>
      <tr>
        <td class="prompt">Mode</td>
        <td style="padding-top: 3px; padding-bottom: 6px;">
          <label><input type="radio" name="mode" id="mode-genotype" checked value="genotype">Genotype analysis</label>
          <label><input type="radio" name="mode" id="mode-reprocess" value="reprocess" disabled>Schedule re-processing</label>
          <label><input type="radio" name="mode" id="mode-resolve" value="resolve" disabled>Resolve problems</label>
        </td>
      </tr>
      </table>

      <table id="itemTable" data-mode="genotype">
      </table>
    </div>
  </div>
  
  <div id="wizard-status"></div>

  <table class="navigation" id="navigation">
  <tr>
    <td><base:button id="gocancel" title="Cancel" /></td>
    <td><base:button id="goreprocess" title="Schedule re-processing&hellip;" image="<%=home+"/images/pipette.png"%>" /></td>
    <td id="gonext-message" class="message"></td>
  </tr>
  </table>
  
  </form>
  </div>
  
</base:body>
</base:page>
<%
}
finally
{
  if (dc != null) dc.close();
}
%>