source: extensions/net.sf.basedb.reggie/trunk/resources/index.jsp @ 1403

<%@ page
  pageEncoding="UTF-8"
  session="false"
  import="net.sf.basedb.core.Application"
  import="net.sf.basedb.core.User"
  import="net.sf.basedb.core.Role"
  import="net.sf.basedb.core.Group"
  import="net.sf.basedb.core.DbControl"
  import="net.sf.basedb.core.Item"
  import="net.sf.basedb.core.Permission"
  import="net.sf.basedb.core.SessionControl"
  import="net.sf.basedb.core.SystemItems"
  import="net.sf.basedb.core.ItemQuery"
  import="net.sf.basedb.core.query.Expressions"
  import="net.sf.basedb.core.query.Hql"
  import="net.sf.basedb.core.query.Restrictions"
  import="net.sf.basedb.clients.web.Base"
  import="net.sf.basedb.clients.web.util.HTML"
  import="net.sf.basedb.util.Values"
  import="java.util.List"
%>
<%@ taglib prefix="base" uri="/WEB-INF/base.tld" %>
<%@ taglib prefix="p" uri="/WEB-INF/path.tld" %>
<%
final SessionControl sc = Base.getExistingSessionControl(request, true);
final String ID = sc.getId();
final float scale = Base.getScale(sc);
DbControl dc = null;
try
{
  dc = sc.newDbControl();
  final User user = User.getById(dc, sc.getLoggedInUserId());
  boolean isAdmin = false;
  boolean isPatientCurator = false;
  boolean hasCreateSamplePermission = false;
  boolean hasCreateExtractPermission = false;
  try
  {
    Role admin = Role.getById(dc, SystemItems.getId(Role.ADMINISTRATOR));
    isAdmin = sc.isMemberOf(admin);
  }
  catch (RuntimeException ex)
  {}
  try
  {
    ItemQuery<Group> query = Group.getQuery();
    query.restrict(Restrictions.eq(Hql.property("name"), Expressions.string("PatientCurator")));
    List<Group> result = query.list(dc);
    if (result.size() == 1)
    {
      isPatientCurator = sc.isMemberOf(result.get(0));
    }
  }
  catch (RuntimeException ex)
  {}
  try
  {
    if (sc.hasPermission(Permission.CREATE, Item.SAMPLE))
    {
      hasCreateSamplePermission = true;
    }
  }
  catch(RuntimeException ex)
  {}
  try
  {
    if (sc.hasPermission(Permission.CREATE, Item.EXTRACT))
    {
      hasCreateExtractPermission = true;
    }
  }
  catch(RuntimeException ex)
  {}
%>
<base:page type="default" >
<base:head styles="path.css">
<style>
dd
{
  margin-left: 0px;
  margin-bottom: 10px;
}
</style>
</base:head>
<base:body>

  <p:path style="margin-top: 20px; margin-bottom: 10px;">
    <p:pathelement title="Reggie" />
  </p:path>

  <table border="0" cellspacing="0" cellpadding="0" width="100%" style="margin-left: 20px;">
  <tr valign="top">
    <td width="50%">
  
    <h3 class="light">Reggie wizards</h3>
    <div class="boxedbottom">
      <dl>
      
      <%
      if (isAdmin)
      {
        %>
        <dt>
          <table border="0" cellspacing="0" cellpadding="0">
          <tr>
            <td><base:icon image="configure.png" style="padding-right: 4px;"/></td>
            <td><a href="install.jsp?ID=<%=ID%>">Installation wizard</a></td>
          </tr>
          </table>
        </dt>
        <dd>
          <ul>
          <li>Check that all annotation types and other items used by Reggie exists in BASE.
          <li>Create missing items.
          </ul>
        </dd>
        <%
      }
      if (isPatientCurator || isAdmin)
      {
        %>
        <dt>
          <table border="0" cellspacing="0" cellpadding="0">
          <tr>
            <td><base:icon image="share.gif" style="padding-right: 4px;"/></td>
            <td><a href="persinfo.jsp?ID=<%=ID%>">Personal information registration wizard</a></td>
          </tr>
          </table>
        </dt>
        <dd>
          <ul>
          <li>Register new cases and patients.
          <li>Update existing cases and specimen tubes.
          </ul>
        </dd>
        <%
      }
      if (isPatientCurator || isAdmin)
      {
        %>
        <dt>
          <table border="0" cellspacing="0" cellpadding="0">
          <tr>
            <td><base:icon image="file.gif" style="padding-right: 4px;"/></td>
            <td><a href="refform.jsp?ID=<%=ID%>">Referral form registration wizard</a></td>
          </tr>
          </table>
        </dt>
        <dd>
          <ul>
          <li>Link scanned referral forms to cases.
          </ul>
        </dd>
        <%
      }
      if (isPatientCurator || isAdmin)
      {
        %>
        <dt>
          <table border="0" cellspacing="0" cellpadding="0">
          <tr>
            <td><base:icon image="file.gif" style="padding-right: 4px;"/></td>
            <td><a href="consentform.jsp?ID=<%=ID%>">Consent form registration wizard</a></td>
          </tr>
          </table>
        </dt>
        <dd>
          <ul>
          <li>Register consent forms.
          </ul>
        </dd>
        <%
      }
      if (hasCreateSamplePermission)
      {
        %>
        <dt>
          <table border="0" cellspacing="0" cellpadding="0">
          <tr>
            <td><base:icon image="file.gif" style="padding-right: 4px;"/></td>
            <td><a href="specimentube.jsp?ID=<%=ID%>">Specimen tube registration wizard</a></td>
          </tr>
          </table>
        </dt>
        <dd>
          <ul>
          <li>Register new specimen tubes.
          <li>Update existing specimen tubes.
          </ul>
        </dd>
        <%
      }
      if (hasCreateSamplePermission && hasCreateExtractPermission)
      {
        %>
        <dt>
          <table border="0" cellspacing="0" cellpadding="0">
          <tr>
            <td><base:icon image="file.gif" style="padding-right: 4px;"/></td>
            <td><a href="partitionform.jsp?ID=<%=ID%>">Partition registration wizard</a></td>
          </tr>
          </table>
        </dt>
        <dd>
          <ul>
          <li>Register new partitions of existing specimens.
          </ul>
        </dd>
        <%
      }
      %>
      </dl>
    
    </div>
    </td>
    <td width="50%">
    </td>
  </tr>
  </table>


</base:body>
</base:page>
<%
}
finally
{
  if (dc != null) dc.close();
}
%>