source: extensions/net.sf.basedb.reggie/trunk/resources/libprep/show_flagged_rna.jsp @ 2142

<%@ page
  pageEncoding="UTF-8"
  session="false"
  import="net.sf.basedb.core.Application"
  import="net.sf.basedb.core.User"
  import="net.sf.basedb.core.DbControl"
  import="net.sf.basedb.core.SessionControl"
  import="net.sf.basedb.clients.web.Base"
  import="net.sf.basedb.clients.web.util.HTML"
  import="net.sf.basedb.clients.web.extensions.ExtensionsControl"
  import="net.sf.basedb.util.Values"
%>
<%@ taglib prefix="base" uri="/WEB-INF/base.tld" %>
<%@ taglib prefix="tbl" uri="/WEB-INF/table.tld" %>

<%
final SessionControl sc = Base.getExistingSessionControl(request, true);
final String ID = sc.getId();
final float scale = Base.getScale(sc);
final String home = ExtensionsControl.getHomeUrl("net.sf.basedb.reggie");
DbControl dc = null;
try
{
  dc = sc.newDbControl();
  final User user = User.getById(dc, sc.getLoggedInUserId());
  final String title = "Flagged RNA items";
  final int numFlagged = Values.getInt(request.getParameter("numFlagged"));
  final int numSelected = Values.getInt(request.getParameter("numSelected"));
%>
<base:page type="popup" title="<%=title%>">
<base:head scripts="table.js" styles="table.css">
<script language="JavaScript" src="../reggie.js" type="text/javascript" charset="UTF-8"></script>
<script>

function init()
{
  var flagged = window.opener.Rna.getFlagged();
  var frm = document.forms['flaggedRna'];
  for (var i = 0; i < flagged.length; i++)
  {
    var rna = flagged[i];
    document.getElementById('rna.'+i).innerHTML = rna.name+'<img class="link case-summary" onclick="showCaseSummary(\''+rna.name+'\')" src="../images/case_summary.png">';
    if (rna.bioWell)
    {
      var well = rna.bioWell;
      document.getElementById('location.'+i).innerHTML = well.bioPlate.name +' ['+WELL_ALPHA[well.row]+(well.column+1)+']';
    }
    var qs = rna.rqs || rna.rin;
    document.getElementById('remainingQuantity.'+i).innerHTML = Numbers.formatNumber(rna.remainingQuantity, 2);
    document.getElementById('qualityScore.'+i).innerHTML = Numbers.formatNumber(qs, qs < -10 ? 0 : 1);
    document.getElementById('comment.'+i).innerHTML = rna.comment || '';
    document.getElementById('flag.'+i).innerHTML = rna.flag;
    if (rna.flag == 'NotEnoughRemainingQuantity')
    {
      makeBold('remainingQuantity.'+i)
    }
    else if (rna.flag == 'LowQualityScore')
    {
      makeBold('qualityScore.'+i)
    }
    else
    {
      makeBold('comment.'+i);
    }
    frm['use.'+i].rna = rna;
  }
}

function makeBold(elementId)
{
  Main.addClass(document.getElementById(elementId), 'bold');
}

function useSelected()
{
  var frm = document.forms['flaggedRna'];
  var i = 0;
  while (frm['use.'+i])
  {
    if (frm['use.'+i].checked)
    {
      var rna = frm['use.'+i].rna;
      window.opener.setRnaCallback(rna.id, rna.name);
    }
    i++;
  }
  window.close();
}
function unflagSelected()
{
  var frm = document.forms['flaggedRna'];
  var i = 0;
  while (frm['use.'+i])
  {
    if (frm['use.'+i].checked)
    {
      var rna = frm['use.'+i].rna;
      window.opener.Rna.unflag(window.opener.Rna.createByName(rna.name));
    }
    i++;
  }
  window.opener.updateNumFlaggedRna();
  window.close();
}

function showCaseSummary(name)
{
  var caseName = name.substring(0, 7);
  var url = '../reports/case_summary.jsp?ID=<%=ID%>&caseName='+encodeURIComponent(caseName);
  url += '&pageType=popup';
  Main.openPopup(url, 'CaseSummary'+caseName, 1000, 700);
}

</script>

<style>
.bold
{
  color: #C80000;
  font-weight: bold;
}

.case-summary
{
  padding-left: 4px;
}
</style>

</base:head>
<base:body onload="init()">
  <h1><%=title %></h1>

  <div class="content">
  <tbl:table id="flaggedRna" subclass="fulltable">
    <tbl:columndef id="rna" title="RNA" />
    <tbl:columndef id="location" title="Bioplate" />
    <tbl:columndef id="remainingQuanity" title="Remaining (µg)" />
    <tbl:columndef id="qualityScore" title="RQS/RIN" />
    <tbl:columndef id="comment" title="Comment" />
    <tbl:columndef id="flag" title="Flag" />
  
    <tbl:data style="top: 0px; margin-top: 0px;">
      <tbl:headers>
        <tbl:headerrow>
          <th></th>
          <tbl:columnheaders />
        </tbl:headerrow>
      </tbl:headers>
      <tbl:rows>
      <%
      for (int i = 0; i < numFlagged; ++i)
      {
        %>
        <tbl:row>
          <td style="text-align: center; width: 20px;"><input type="checkbox" name="use.<%=i%>"></td>
          <tbl:cell column="rna" id="<%="rna."+i%>"><%=i%></tbl:cell>
          <tbl:cell column="location" id="<%="location."+i%>"></tbl:cell>
          <tbl:cell column="remainingQuanity" id="<%="remainingQuantity."+i%>"></tbl:cell>
          <tbl:cell column="qualityScore" id="<%="qualityScore."+i%>"></tbl:cell>
          <tbl:cell column="comment" id="<%="comment."+i%>"></tbl:cell>
          <tbl:cell column="flag" id="<%="flag."+i%>"></tbl:cell>
        </tbl:row>
        <%
      }
      %>
      </tbl:rows>
    </tbl:data>
  </tbl:table>
  </div>

  <base:buttongroup subclass="dialogbuttons" id="dialogbuttons">
    <base:button onclick="useSelected()" title="Use selected" 
      disabled="<%=numSelected == 0%>" tooltip="Use the RNA and ignore the flag"
      image="<%=home + "/images/manual_rna.png"%>" />
    <base:button onclick="unflagSelected()" title="Unflag" 
      image="<%=home+"/images/unflag.png"%>" tooltip="Do not flag the selected RNA" />
    <base:button onclick="window.close()" title="Close" />
  </base:buttongroup>
</base:body>
</base:page>
<%
}
finally
{
  if (dc != null) dc.close();
}
%>