1 | <%@ page |
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2 | pageEncoding="UTF-8" |
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3 | session="false" |
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4 | import="net.sf.basedb.core.User" |
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5 | import="net.sf.basedb.core.DbControl" |
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6 | import="net.sf.basedb.core.SessionControl" |
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7 | import="net.sf.basedb.core.Application" |
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8 | import="net.sf.basedb.util.formatter.DateFormatter" |
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9 | import="net.sf.basedb.util.formatter.Formatter" |
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10 | import="net.sf.basedb.clients.web.Base" |
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11 | import="net.sf.basedb.clients.web.util.HTML" |
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12 | import="net.sf.basedb.clients.web.extensions.ExtensionsControl" |
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13 | import="java.util.Date" |
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14 | %> |
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15 | <%@ taglib prefix="base" uri="/WEB-INF/base.tld" %> |
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16 | <%@ taglib prefix="tbl" uri="/WEB-INF/table.tld" %> |
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17 | <%@ taglib prefix="p" uri="/WEB-INF/path.tld" %> |
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18 | <% |
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19 | final SessionControl sc = Base.getExistingSessionControl(request, true); |
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20 | final String ID = sc.getId(); |
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21 | final float scale = Base.getScale(sc); |
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22 | final String home = ExtensionsControl.getHomeUrl("net.sf.basedb.reggie"); |
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23 | DbControl dc = null; |
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24 | try |
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25 | { |
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26 | dc = sc.newDbControl(); |
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27 | final User user = User.getById(dc, sc.getLoggedInUserId()); |
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28 | %> |
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29 | <base:page type="default" title="YellowLabel tracking and reporting"> |
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30 | <base:head |
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31 | scripts="~../reggie-2.js,~list.js" |
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32 | styles="path.css,toolbar.css,~../css/reggie-2.css" |
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33 | > |
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34 | <style> |
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35 | #specimenTable |
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36 | { |
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37 | width: 100%; |
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38 | border-collapse: collapse; |
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39 | } |
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40 | |
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41 | #specimenTable thead |
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42 | { |
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43 | border-bottom-width: 1px; |
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44 | } |
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45 | |
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46 | #specimenTable .highlight |
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47 | { |
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48 | border-top-width: 1px; |
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49 | border-top-style: dotted; |
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50 | } |
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51 | |
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52 | #specimenTable td |
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53 | { |
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54 | text-align: center; |
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55 | width: 4.5em; |
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56 | } |
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57 | |
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58 | #specimenTable tbody td |
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59 | { |
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60 | padding-top: 3px; |
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61 | padding-bottom: 3px; |
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62 | } |
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63 | |
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64 | #specimenTable tr td:first-child, #specimenTable tr th:first-child |
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65 | { |
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66 | width: 2em; |
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67 | max-width: 3em; |
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68 | text-align: right; |
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69 | padding-right: 3px; |
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70 | white-space: nowrap; |
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71 | font-weight: bold; |
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72 | } |
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73 | |
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74 | #specimenTable input[type="text"], #specimenTable select |
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75 | { |
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76 | width: calc(100% - 10px); |
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77 | } |
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78 | |
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79 | .completed |
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80 | { |
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81 | color: #666666; |
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82 | font-style: italic; |
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83 | background-color: #F0F0F0; |
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84 | } |
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85 | |
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86 | .pilotreport |
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87 | { |
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88 | font-weight: bold; |
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89 | background-color: #F8F0FF; |
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90 | } |
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91 | |
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92 | .linked-item img, .linked-file img, #specimenTable .case-summary |
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93 | { |
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94 | float: right; |
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95 | padding-right: 3px; |
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96 | } |
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97 | |
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98 | </style> |
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99 | </base:head> |
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100 | <base:body> |
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101 | |
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102 | <p:path><p:pathelement |
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103 | title="Reggie" href="<%="../index.jsp?ID="+ID%>" |
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104 | /><p:pathelement title="YellowLabel tracking and reporting" |
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105 | /></p:path> |
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106 | |
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107 | <div class="content"> |
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108 | |
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109 | <div id="page-data" class="datacontainer" |
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110 | data-home-reggie="<%=HTML.encodeTags(home) %>" |
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111 | ></div> |
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112 | |
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113 | <form name="reggie" id="wizard" class="wizard"> |
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114 | |
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115 | <div class="step auto-hide" id="step-1"> |
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116 | <div class="step-no">1</div> |
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117 | <div class="step-title">YellowLabel specimen (found <span id="num-active">?</span> active and <span id="num-completed">?</span> completed)</div> |
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118 | <div class="step-content"> |
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119 | |
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120 | <tbl:toolbar id="yellow-toolbar" subclass="bg-filled-50 bottomborder" style="display: none;"> |
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121 | <tbl:button |
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122 | id="btnMarkAsCompleted" |
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123 | image="<%=home + "/images/validate.png"%>" |
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124 | title="Mark completed…" |
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125 | /> |
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126 | <tbl:button |
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127 | id="btnCreatePilotReportZip" |
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128 | image="file_compressed.png" |
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129 | title="Create Pilot report ZIP file…" |
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130 | /> |
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131 | </tbl:toolbar> |
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132 | |
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133 | <table id="specimenTable"> |
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134 | <thead class="bg-filled-100"> |
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135 | <tr> |
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136 | <th class="index"></th> |
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137 | <th class="dottedleft" colspan="4">Specimen</th> |
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138 | <th class="dottedleft" colspan="1">RNA</th> |
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139 | <th class="dottedleft" colspan="1">Library</th> |
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140 | <th class="dottedleft" colspan="1">Raw bioassay</th> |
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141 | <th class="dottedleft" colspan="1">Reports</th> |
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142 | <th class="dottedleft" colspan="1">Completed</th> |
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143 | </tr> |
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144 | |
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145 | <tr> |
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146 | <th></th> |
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147 | <th class="dottedleft">Name</th> |
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148 | <th>Site</th> |
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149 | <th>Sampling date</th> |
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150 | <th>Arrival date</th> |
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151 | <th class="dottedleft">Extraction date</th> |
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152 | <th class="dottedleft">Created date</th> |
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153 | <th class="dottedleft">Created date</th> |
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154 | <th class="dottedleft">Pilot report</th> |
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155 | <th class="dottedleft">Date</th> |
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156 | </tr> |
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157 | |
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158 | <tr> |
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159 | <th><base:icon image="check_uncheck.png" id="check_uncheck" /></th> |
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160 | <th class="dottedleft"></th> |
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161 | <th> |
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162 | <select name="siteFilter" id="siteFilter"> |
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163 | <option value=""> |
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164 | </select> |
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165 | </th> |
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166 | <th><input type="text" name="samplingDateFilter" id="samplingDateFilter"></th> |
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167 | <th><input type="text" name="arrivalDateFilter" id="arrivalDateFilter"></th> |
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168 | <th class="dottedleft"><input type="text" name="extractionDateFilter" id="extractionDateFilter"></th> |
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169 | <th class="dottedleft"><input type="text" name="libraryDateFilter" id="libraryDateFilter"></th> |
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170 | <th class="dottedleft"><input type="text" name="rawBioAssayDateFilter" id="rawBioAssayDateFilter"></th> |
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171 | <th class="dottedleft"><input type="text" name="pilotReportDateFilter" id="pilotReportDateFilter"></th> |
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172 | <th class="dottedleft"><input type="text" name="completedDateFilter" id="completedDateFilter"></th> |
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173 | </tr> |
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174 | </thead> |
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175 | <tbody id="specimen-list"> |
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176 | </tbody> |
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177 | <tbody id="no-matching-specimen" style="display: none;"> |
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178 | <tr> |
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179 | <th></th> |
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180 | <td class="dottedleft" colspan="8" style="text-align: left; font-weight: bold; padding: 1em;"> |
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181 | No specimen matches the filter |
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182 | </td> |
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183 | </tr> |
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184 | </tbody> |
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185 | </table> |
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186 | </div> |
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187 | </div> |
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188 | |
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189 | <div id="wizard-status"></div> |
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190 | |
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191 | <table class="navigation" id="navigation"> |
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192 | <tr> |
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193 | <td><base:button id="gocancel" title="Cancel" /></td> |
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194 | <td><base:button id="gonext" title="Next" image="<%=home+"/images/gonext.png"%>" /></td> |
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195 | <td><base:button id="goregister" title="Register" image="<%=home+"/images/import.png"%>" /></td> |
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196 | <td><base:button id="gorestart" title="Restart" image="<%=home+"/images/goback.png"%>" /></td> |
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197 | <td id="gonext-message" class="message"></td> |
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198 | </tr> |
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199 | </table> |
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200 | |
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201 | </form> |
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202 | </div> |
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203 | |
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204 | </base:body> |
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205 | </base:page> |
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206 | <% |
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207 | } |
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208 | finally |
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209 | { |
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210 | if (dc != null) dc.close(); |
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211 | } |
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212 | %> |
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