source: extensions/net.sf.basedb.relax/trunk/resources/export/map-external-data.jsp @ 4631

<%@ page
  pageEncoding="UTF-8"
  session="false"
  import="net.sf.basedb.core.Application"
  import="net.sf.basedb.core.User"
  import="net.sf.basedb.core.Role"
  import="net.sf.basedb.core.SystemItems"
  import="net.sf.basedb.core.DbControl"
  import="net.sf.basedb.core.SessionControl"
  import="net.sf.basedb.core.PermissionDeniedException"
  import="net.sf.basedb.clients.web.Base"
  import="net.sf.basedb.clients.web.util.HTML"
  import="net.sf.basedb.clients.web.extensions.ExtensionsControl"
  import="net.sf.basedb.util.Values"
%>
<%@ taglib prefix="base" uri="/WEB-INF/base.tld" %>
<%@ taglib prefix="p" uri="/WEB-INF/path.tld" %>
<%
final SessionControl sc = Base.getExistingSessionControl(request, true);
final String ID = sc.getId();
final float scale = Base.getScale(sc);
final String home = ExtensionsControl.getHomeUrl("net.sf.basedb.relax.admin");
DbControl dc = null;
try
{
  dc = sc.newDbControl();
  final User user = User.getById(dc, sc.getLoggedInUserId());
  boolean isAdmin = user.getId() == SystemItems.getId(User.ROOT)
    || sc.getActiveRoles().contains(SystemItems.getId(Role.ADMINISTRATOR));
  
  if (!isAdmin)
  {
    throw new PermissionDeniedException("This page requires Administrator privileges.");
  }
%>
<base:page type="default" >
<base:head 
  scripts="~../relax.js,~map-external-data.js" 
  styles="path.css,~../css/relax.css"
>
<style>

</style>
</base:head>
<base:body>

  <p:path><p:pathelement 
    title="Relax" href="<%="../index-admin.jsp?ID="+ID%>" 
    /><p:pathelement title="Map external data to releases" 
    /></p:path>

  <div class="content">
  <form name="reggie" id="wizard" class="wizard">
  
  <div class="step" id="step-1">
    <div class="step-no">1</div>
    <div class="step-title">Select a source data file</div>
    <div class="step-content">
      
      <table class="step-form">
      <tr class="align-top">
        <td class="prompt">File</td>
        <td class="input">
          <input type="file" name="file" id="file" class="required" style="width: 95%;" accept=".csv,.tsv">
        </td>
        <td class="status" id="file.status"></td>
        <td class="help"><span id="file.message" class="message"></span>
          <ul>
          <li>Select the file that was produced by the Reggie wizard. 
          <li>The first line should contain column headers starting with Patient, Case and Specimen.
          <li>For each line the wizard will check if a specimen is found in the current release.
          </ul>
        </td>
      </tr>
      </table>
    </div>
  </div>

  <div id="wizard-status"></div>
  <div id="wizard-progress"></div>

  <table class="navigation" id="navigation">
  <tr>
    <td><base:button id="gocancel" title="Cancel" /></td>
    <td><base:button id="goexport" title="Export" image="<%=home+"/images/gonext.png"%>" /></td>
    <td><base:button id="gorestart" title="Restart" image="<%=home+"/images/goback.png"%>" /></td>
    <td><base:button id="godownload" title="Download" image="<%=home+"/images/download.png"%>" /></td>
    <td id="gonext-message" class="message"></td>
  </tr>
  </table>
  
  </form>
  </div>
  
</base:body>
</base:page>
<%
}
finally
{
  if (dc != null) dc.close();
}
%>