source: other/pipeline/trunk/hisat2 @ 6521

Last change on this file since 6521 was 6521, checked in by Nicklas Nordborg, 10 months ago

Adding a wrapper for calling Hisat 2.2. It requries extra entries in the PATH so we can't call it directly.

File size: 134 bytes
Line 
1#!/bin/sh
2
3AnacondaDir=/usr/local/packages/anaconda3/envs/SCAN-B
4export PATH=${AnacondaDir}/bin:${PATH}
5
6${AnacondaDir}/bin/hisat2 $@
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