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Last change
on this file since 2496 was
2496,
checked in by Nicklas Nordborg, 9 years ago
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|
Adding svn properties
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-
Property svn:eol-style set to
LF
-
Property svn:executable set to
*
-
Property svn:keywords set to
Id
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File size:
316 bytes
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| Line | |
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| 1 | #!/bin/sh |
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| 2 | |
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| 3 | # $Id $ |
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| 4 | |
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| 5 | if [ -z "$TrimmomaticJAR" ]; then |
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| 6 | TrimmomaticJAR=/usr/local/packages/trimmomatic/0.32/trimmomatic-0.32.jar |
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| 7 | fi |
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| 8 | |
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| 9 | if [ -z "$TrimmomaticMemory" ]; then |
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| 10 | TrimmomaticMemory=16g |
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| 11 | fi |
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| 12 | |
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| 13 | NumThreads=`nproc` |
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| 14 | |
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| 15 | cmd=$1 |
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| 16 | shift |
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| 17 | |
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| 18 | java -Xmx${TrimmomaticMemory} -jar ${TrimmomaticJAR} ${cmd} -threads ${NumThreads} $@ |
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