| 1 | <?xml version="1.0" encoding="UTF-8"?> |
|---|
| 2 | <!-- ====================================================================== |
|---|
| 3 | Oct 10, 2005 3:32:31 PM |
|---|
| 4 | |
|---|
| 5 | Base plugins |
|---|
| 6 | This buildfile is used for base-plugins created at the oncology department in Lund, Sweden |
|---|
| 7 | |
|---|
| 8 | johan |
|---|
| 9 | ====================================================================== --> |
|---|
| 10 | <project name="Base plugins" default="dist" basedir="."> |
|---|
| 11 | <description>This buildfile is used for base-plugins created at the oncology department in Lund, Sweden</description> |
|---|
| 12 | |
|---|
| 13 | <!-- doc --> |
|---|
| 14 | <property name="doc" value="doc"/> |
|---|
| 15 | |
|---|
| 16 | <!-- lib --> |
|---|
| 17 | <property name="lib" location="lib" /> |
|---|
| 18 | <property name="qpackage.lib" location="QPackage/lib" /> |
|---|
| 19 | <property name="smooth.doc" location="smooth/doc" /> |
|---|
| 20 | |
|---|
| 21 | <!-- src --> |
|---|
| 22 | <property name="basefile.src" location="BaseFile/src" /> |
|---|
| 23 | <property name="qpackage.src" location="QPackage/src" /> |
|---|
| 24 | <property name="normalization.src" location="Normalization/src" /> |
|---|
| 25 | <property name="null.src" location="NullPlugin/src" /> |
|---|
| 26 | <property name="smooth.src" location="Smooth/src" /> |
|---|
| 27 | <property name="gominer.src" location="GoMiner/src" /> |
|---|
| 28 | <property name="ztest.src" location="ZTest/src" /> |
|---|
| 29 | <property name="annotationfilter.src" location="AnnotationFilter/src" /> |
|---|
| 30 | |
|---|
| 31 | <!-- bin --> |
|---|
| 32 | <property name="bin" location="build" /> |
|---|
| 33 | <property name="basefile.bin" location="${bin}/BaseFile" /> |
|---|
| 34 | <property name="qpackage.bin" location="${bin}/QPackage" /> |
|---|
| 35 | <property name="normalization.bin" location="${bin}/Normalization" /> |
|---|
| 36 | <property name="null.bin" location="${bin}/NullPlugin" /> |
|---|
| 37 | <property name="smooth.bin" location="${bin}/Smooth" /> |
|---|
| 38 | <property name="gominer.bin" location="${bin}/GoMiner" /> |
|---|
| 39 | <property name="ztest.bin" location="${bin}/ZTest" /> |
|---|
| 40 | <property name="annotationfilter.bin" location="${bin}/AnnotationFilter" /> |
|---|
| 41 | |
|---|
| 42 | <!-- dist --> |
|---|
| 43 | <property name="dist" location="dist" /> |
|---|
| 44 | |
|---|
| 45 | <!-- package --> |
|---|
| 46 | <property name="smooth.pac" value="${dist}/smooth"/> |
|---|
| 47 | |
|---|
| 48 | |
|---|
| 49 | <path id="classpath"> |
|---|
| 50 | <fileset dir="${lib}"> |
|---|
| 51 | <include name="**/*.jar"/> |
|---|
| 52 | </fileset> |
|---|
| 53 | <pathelement path="${basefile.bin}"/> |
|---|
| 54 | </path> |
|---|
| 55 | |
|---|
| 56 | <!-- ================================= |
|---|
| 57 | target: compile |
|---|
| 58 | ================================== --> |
|---|
| 59 | <target name="compile" description="--> Compiles all the packages"> |
|---|
| 60 | <ant target="qpackage.compile" /> |
|---|
| 61 | <ant target="normalization.compile" /> |
|---|
| 62 | <ant target="smooth.compile" /> |
|---|
| 63 | </target> |
|---|
| 64 | |
|---|
| 65 | <!-- - - - - - - - - - - - - - - - - - |
|---|
| 66 | target: basefile.compile |
|---|
| 67 | - - - - - - - - - - - - - - - - - --> |
|---|
| 68 | <target name="basefile.compile"> |
|---|
| 69 | <mkdir dir="${basefile.bin}"/> |
|---|
| 70 | <javac |
|---|
| 71 | srcdir="${basefile.src}" |
|---|
| 72 | destdir="${basefile.bin}" |
|---|
| 73 | debug="true" |
|---|
| 74 | deprecation="true" |
|---|
| 75 | encoding="ISO-8859-1" |
|---|
| 76 | /> |
|---|
| 77 | </target> |
|---|
| 78 | |
|---|
| 79 | <!-- - - - - - - - - - - - - - - - - - |
|---|
| 80 | target: qpackage.compile |
|---|
| 81 | - - - - - - - - - - - - - - - - - --> |
|---|
| 82 | <target name="qpackage.compile" depends="basefile.compile"> |
|---|
| 83 | <mkdir dir="${qpackage.bin}"/> |
|---|
| 84 | <javac |
|---|
| 85 | srcdir="${qpackage.src}" |
|---|
| 86 | destdir="${qpackage.bin}" |
|---|
| 87 | classpath="${basefile.bin}" |
|---|
| 88 | debug="true" |
|---|
| 89 | deprecation="true" |
|---|
| 90 | encoding="ISO-8859-1" |
|---|
| 91 | /> |
|---|
| 92 | </target> |
|---|
| 93 | |
|---|
| 94 | <!-- - - - - - - - - - - - - - - - - - |
|---|
| 95 | target: normalization.compile |
|---|
| 96 | - - - - - - - - - - - - - - - - - --> |
|---|
| 97 | <target name="normalization.compile" depends="basefile.compile"> |
|---|
| 98 | <mkdir dir="${normalization.bin}"/> |
|---|
| 99 | <javac |
|---|
| 100 | srcdir="${normalization.src}" |
|---|
| 101 | destdir="${normalization.bin}" |
|---|
| 102 | classpath="${basefile.bin}" |
|---|
| 103 | debug="true" |
|---|
| 104 | deprecation="true" |
|---|
| 105 | encoding="ISO-8859-1" |
|---|
| 106 | /> |
|---|
| 107 | </target> |
|---|
| 108 | |
|---|
| 109 | <!-- - - - - - - - - - - - - - - - - - |
|---|
| 110 | target: smooth.compile |
|---|
| 111 | - - - - - - - - - - - - - - - - - --> |
|---|
| 112 | <target name="smooth.compile" depends="basefile.compile"> |
|---|
| 113 | <mkdir dir="${smooth.bin}"/> |
|---|
| 114 | <javac |
|---|
| 115 | srcdir="${smooth.src}" |
|---|
| 116 | destdir="${smooth.bin}" |
|---|
| 117 | classpathref="classpath" |
|---|
| 118 | debug="true" |
|---|
| 119 | deprecation="true" |
|---|
| 120 | encoding="ISO-8859-1" |
|---|
| 121 | /> |
|---|
| 122 | </target> |
|---|
| 123 | |
|---|
| 124 | <!-- - - - - - - - - - - - - - - - - - |
|---|
| 125 | target: null.compile |
|---|
| 126 | - - - - - - - - - - - - - - - - - --> |
|---|
| 127 | <target name="null.compile" depends="basefile.compile"> |
|---|
| 128 | <mkdir dir="${null.bin}"/> |
|---|
| 129 | <javac |
|---|
| 130 | srcdir="${null.src}" |
|---|
| 131 | destdir="${null.bin}" |
|---|
| 132 | classpath="${basefile.bin}" |
|---|
| 133 | debug="true" |
|---|
| 134 | deprecation="true" |
|---|
| 135 | encoding="ISO-8859-1" |
|---|
| 136 | /> |
|---|
| 137 | </target> |
|---|
| 138 | |
|---|
| 139 | <!-- - - - - - - - - - - - - - - - - - |
|---|
| 140 | target: gominer.compile |
|---|
| 141 | - - - - - - - - - - - - - - - - - --> |
|---|
| 142 | <target name="gominer.compile" depends="basefile.compile"> |
|---|
| 143 | <mkdir dir="${gominer.bin}"/> |
|---|
| 144 | <javac |
|---|
| 145 | srcdir="${gominer.src}" |
|---|
| 146 | destdir="${gominer.bin}" |
|---|
| 147 | classpath="${basefile.bin}" |
|---|
| 148 | debug="true" |
|---|
| 149 | deprecation="true" |
|---|
| 150 | encoding="ISO-8859-1" |
|---|
| 151 | /> |
|---|
| 152 | </target> |
|---|
| 153 | |
|---|
| 154 | <!-- - - - - - - - - - - - - - - - - - |
|---|
| 155 | target: ztest.compile |
|---|
| 156 | - - - - - - - - - - - - - - - - - --> |
|---|
| 157 | <target name="ztest.compile" depends="basefile.compile"> |
|---|
| 158 | <mkdir dir="${ztest.bin}"/> |
|---|
| 159 | <javac |
|---|
| 160 | srcdir="${ztest.src}" |
|---|
| 161 | destdir="${ztest.bin}" |
|---|
| 162 | classpathref="classpath" |
|---|
| 163 | debug="true" |
|---|
| 164 | deprecation="true" |
|---|
| 165 | encoding="ISO-8859-1" |
|---|
| 166 | /> |
|---|
| 167 | </target> |
|---|
| 168 | |
|---|
| 169 | <!-- - - - - - - - - - - - - - - - - - |
|---|
| 170 | target: annotationfilter.compile |
|---|
| 171 | - - - - - - - - - - - - - - - - - --> |
|---|
| 172 | <target name="annotationfilter.compile" depends="basefile.compile"> |
|---|
| 173 | <mkdir dir="${annotationfilter.bin}"/> |
|---|
| 174 | <javac |
|---|
| 175 | srcdir="${annotationfilter.src}" |
|---|
| 176 | destdir="${annotationfilter.bin}" |
|---|
| 177 | classpathref="classpath" |
|---|
| 178 | debug="true" |
|---|
| 179 | deprecation="true" |
|---|
| 180 | encoding="ISO-8859-1" |
|---|
| 181 | /> |
|---|
| 182 | </target> |
|---|
| 183 | |
|---|
| 184 | |
|---|
| 185 | |
|---|
| 186 | <!-- ================================= |
|---|
| 187 | target: clean |
|---|
| 188 | ================================= --> |
|---|
| 189 | <target name="clean" description="--> Remove all generated files"> |
|---|
| 190 | <delete dir="${dist}" /> |
|---|
| 191 | <delete dir="${bin}" /> |
|---|
| 192 | </target> |
|---|
| 193 | |
|---|
| 194 | |
|---|
| 195 | <!-- ================================= |
|---|
| 196 | target: dist |
|---|
| 197 | ================================== --> |
|---|
| 198 | <target name="dist" |
|---|
| 199 | depends="qpackage.dist, lowess.dist, smooth.dist" |
|---|
| 200 | description="--> Creates a ditributable gzipfile for each package"> |
|---|
| 201 | </target> |
|---|
| 202 | |
|---|
| 203 | <!-- - - - - - - - - - - - - - - - - - |
|---|
| 204 | target: qpackage.dist |
|---|
| 205 | - - - - - - - - - - - - - - - - - --> |
|---|
| 206 | <target name="qpackage.dist" depends="qpackage.compile"> |
|---|
| 207 | <mkdir dir="${dist}" /> |
|---|
| 208 | <jar destfile="${dist}/qpackage.jar"> |
|---|
| 209 | <fileset dir="${basefile.src}" /> |
|---|
| 210 | <fileset dir="${basefile.bin}" /> |
|---|
| 211 | <fileset dir="${qpackage.bin}" /> |
|---|
| 212 | <fileset dir="${qpackage.src}" /> |
|---|
| 213 | <manifest> |
|---|
| 214 | <attribute name="Built-By" value="${user.name}"/> |
|---|
| 215 | </manifest> |
|---|
| 216 | </jar> |
|---|
| 217 | </target> |
|---|
| 218 | |
|---|
| 219 | <!-- - - - - - - - - - - - - - - - - - |
|---|
| 220 | target: lowess.dist |
|---|
| 221 | - - - - - - - - - - - - - - - - - --> |
|---|
| 222 | <target name="lowess.dist" depends="normalization.compile"> |
|---|
| 223 | <mkdir dir="${dist}" /> |
|---|
| 224 | <jar destfile="${dist}/lowess.jar"> |
|---|
| 225 | <fileset dir="${basefile.src}" /> |
|---|
| 226 | <fileset dir="${basefile.bin}" /> |
|---|
| 227 | <fileset dir="${normalization.bin}" includes="lowess/**" /> |
|---|
| 228 | <fileset dir="${normalization.src}" includes="lowess/**" /> |
|---|
| 229 | <manifest> |
|---|
| 230 | <attribute name="Built-By" value="${user.name}" /> |
|---|
| 231 | <attribute name="Main-Class" value="lowess.Lowess" /> |
|---|
| 232 | </manifest> |
|---|
| 233 | </jar> |
|---|
| 234 | </target> |
|---|
| 235 | |
|---|
| 236 | <!-- - - - - - - - - - - - - - - - - - |
|---|
| 237 | target: smooth.dist |
|---|
| 238 | - - - - - - - - - - - - - - - - - --> |
|---|
| 239 | <target name="smooth.dist" depends="smooth.compile"> |
|---|
| 240 | <mkdir dir="${dist}" /> |
|---|
| 241 | <jar destfile="${dist}/smooth.jar"> |
|---|
| 242 | <fileset dir="${basefile.src}" /> |
|---|
| 243 | <fileset dir="${basefile.bin}" /> |
|---|
| 244 | <fileset dir="${smooth.bin}" /> |
|---|
| 245 | <fileset dir="${smooth.src}" /> |
|---|
| 246 | <manifest> |
|---|
| 247 | <attribute name="Built-By" value="${user.name}"/> |
|---|
| 248 | <attribute name="Main-Class" value="smooth.SmoothMain"/> |
|---|
| 249 | </manifest> |
|---|
| 250 | </jar> |
|---|
| 251 | </target> |
|---|
| 252 | |
|---|
| 253 | <!-- - - - - - - - - - - - - - - - - - |
|---|
| 254 | target: null.dist |
|---|
| 255 | - - - - - - - - - - - - - - - - - --> |
|---|
| 256 | <target name="null.dist" depends="null.compile"> |
|---|
| 257 | <mkdir dir="${dist}" /> |
|---|
| 258 | <jar destfile="${dist}/nullbase1plugin.jar"> |
|---|
| 259 | <fileset dir="${basefile.src}" /> |
|---|
| 260 | <fileset dir="${basefile.bin}" /> |
|---|
| 261 | <fileset dir="${null.bin}" /> |
|---|
| 262 | <fileset dir="${null.src}" /> |
|---|
| 263 | <manifest> |
|---|
| 264 | <attribute name="Built-By" value="${user.name}"/> |
|---|
| 265 | <attribute name="Main-Class" value="base1null.Base1NullPlugin"/> |
|---|
| 266 | </manifest> |
|---|
| 267 | </jar> |
|---|
| 268 | </target> |
|---|
| 269 | |
|---|
| 270 | <!-- - - - - - - - - - - - - - - - - - |
|---|
| 271 | target: gominer.dist |
|---|
| 272 | - - - - - - - - - - - - - - - - - --> |
|---|
| 273 | <target name="gominer.dist" depends="gominer.compile"> |
|---|
| 274 | <mkdir dir="${dist}" /> |
|---|
| 275 | <jar destfile="${dist}/gominer.jar"> |
|---|
| 276 | <fileset dir="${basefile.src}" /> |
|---|
| 277 | <fileset dir="${basefile.bin}" /> |
|---|
| 278 | <fileset dir="${gominer.bin}" /> |
|---|
| 279 | <fileset dir="${gominer.src}" /> |
|---|
| 280 | <manifest> |
|---|
| 281 | <attribute name="Built-By" value="${user.name}"/> |
|---|
| 282 | <attribute name="Main-Class" value="net.sf.basedb.plugin.gominer.GoMinerExport"/> |
|---|
| 283 | </manifest> |
|---|
| 284 | </jar> |
|---|
| 285 | </target> |
|---|
| 286 | |
|---|
| 287 | <!-- - - - - - - - - - - - - - - - - - |
|---|
| 288 | target: ztest.dist |
|---|
| 289 | - - - - - - - - - - - - - - - - - --> |
|---|
| 290 | <target name="ztest.dist" depends="ztest.compile"> |
|---|
| 291 | <mkdir dir="${dist}" /> |
|---|
| 292 | <jar destfile="${dist}/ztest.jar"> |
|---|
| 293 | <fileset dir="${basefile.src}" /> |
|---|
| 294 | <fileset dir="${basefile.bin}" /> |
|---|
| 295 | <fileset dir="${ztest.bin}" /> |
|---|
| 296 | <fileset dir="${ztest.src}" /> |
|---|
| 297 | <manifest> |
|---|
| 298 | <attribute name="Built-By" value="${user.name}"/> |
|---|
| 299 | <attribute name="Main-Class" value="ztest.Start"/> |
|---|
| 300 | </manifest> |
|---|
| 301 | </jar> |
|---|
| 302 | </target> |
|---|
| 303 | |
|---|
| 304 | <!-- - - - - - - - - - - - - - - - - - |
|---|
| 305 | target: annotationfilter.dist |
|---|
| 306 | - - - - - - - - - - - - - - - - - --> |
|---|
| 307 | <target name="annotationfilter.dist" depends="annotationfilter.compile"> |
|---|
| 308 | <mkdir dir="${dist}" /> |
|---|
| 309 | <jar destfile="${dist}/annotationfilter.jar"> |
|---|
| 310 | <fileset dir="${basefile.src}" /> |
|---|
| 311 | <fileset dir="${basefile.bin}" /> |
|---|
| 312 | <fileset dir="${annotationfilter.bin}" /> |
|---|
| 313 | <fileset dir="${annotationfilter.src}" /> |
|---|
| 314 | <manifest> |
|---|
| 315 | <attribute name="Built-By" value="${user.name}"/> |
|---|
| 316 | <attribute name="Main-Class" value="annotationfilter.Main"/> |
|---|
| 317 | </manifest> |
|---|
| 318 | </jar> |
|---|
| 319 | </target> |
|---|
| 320 | |
|---|
| 321 | |
|---|
| 322 | <!-- ================================= |
|---|
| 323 | target: smooth.package |
|---|
| 324 | ================================= --> |
|---|
| 325 | <target name="smooth.package" depends="smooth.dist" description="--> Create a zip file containting all files necessary for distribution."> |
|---|
| 326 | <mkdir dir="${smooth.pac}"/> |
|---|
| 327 | <copy file="${dist}/smooth.jar" todir="${smooth.pac}" /> |
|---|
| 328 | <copy file="${doc}/gpl.txt" todir="${smooth.pac}" /> |
|---|
| 329 | <copy file="${lib}/jcommon-1.0.6.jar" todir="${smooth.pac}" /> |
|---|
| 330 | <copy file="${lib}/jfreechart-1.0.3.jar" todir="${smooth.pac}" /> |
|---|
| 331 | <copy file="${smooth.doc}/INSTALL.txt" todir="${smooth.pac}" /> |
|---|
| 332 | <copy file="${smooth.doc}/run" todir="${smooth.pac}" /> |
|---|
| 333 | <copy file="${smooth.doc}/smooth.base" todir="${smooth.pac}" /> |
|---|
| 334 | <zip destfile="smooth.zip" basedir="${smooth.pac}" /> |
|---|
| 335 | </target> |
|---|
| 336 | |
|---|
| 337 | </project> |
|---|
