| 1 | ---------------------------------------------------------------------- |
|---|
| 2 | Instructions for compiling the |
|---|
| 3 | Illumina plug-ins package for BASE. |
|---|
| 4 | ---------------------------------------------------------------------- |
|---|
| 5 | |
|---|
| 6 | ------------ |
|---|
| 7 | Requirements |
|---|
| 8 | ------------ |
|---|
| 9 | |
|---|
| 10 | 1. Ant 1.6 |
|---|
| 11 | |
|---|
| 12 | 2. Java 1.6 |
|---|
| 13 | |
|---|
| 14 | 3. BASE 2.15.0 |
|---|
| 15 | |
|---|
| 16 | --------- |
|---|
| 17 | Compiling |
|---|
| 18 | --------- |
|---|
| 19 | |
|---|
| 20 | 1. Type `ant download-lib` to automatically download the BASE core JAR file that |
|---|
| 21 | are neeed for compilation. You can also do this manually by copying the |
|---|
| 22 | BASE2Core.jar, BASE2CorePlugins.jar, BASE2Webclient.jar and BASE2WSClient.jar files from the |
|---|
| 23 | BASE installation directory (<basedir>/www/WEB-INF/lib/) to the ./lib/compile |
|---|
| 24 | directory. |
|---|
| 25 | |
|---|
| 26 | 2. Type `ant` to compile the code and put everything you need into |
|---|
| 27 | the ./dist directory. |
|---|
| 28 | |
|---|
| 29 | 3. See the INSTALL file for installation instructions. |
|---|
| 30 | |
|---|
| 31 | 4. Use `ant package` to create a downloadable tar.gz package in the ./package |
|---|
| 32 | directory. |
|---|
| 33 | |
|---|
| 34 | ---------- |
|---|
| 35 | Developers |
|---|
| 36 | ---------- |
|---|
| 37 | |
|---|
| 38 | To make the development and testing of this plug-in easier do the following steps: |
|---|
| 39 | |
|---|
| 40 | 1. First time compilation and installation: Compile the source and |
|---|
| 41 | follow the instructions above and in the INSTALL and README files. |
|---|
| 42 | |
|---|
| 43 | |
|---|
| 44 | 2. Enabled the plug-in autoreload functionality in BASE by adding the following |
|---|
| 45 | configuration option to your base.config file: |
|---|
| 46 | |
|---|
| 47 | plugins.autounload = 1 |
|---|
| 48 | |
|---|
| 49 | You may have to restart Tomcat after the change. |
|---|
| 50 | |
|---|
| 51 | |
|---|
| 52 | 3. Change the JAR path of the Illumina plug-ins to point to the JAR file in: |
|---|
| 53 | |
|---|
| 54 | ./dist/illumina-plugins.jar |
|---|
| 55 | |
|---|
| 56 | NOTE! You must of course enter the absolute path or BASE will not find the |
|---|
| 57 | plug-in. |
|---|
| 58 | |
|---|
| 59 | |
|---|
| 60 | 4. Now, when you change the code and re-compile it, BASE will |
|---|
| 61 | automatically detect the change and reload the new code the next |
|---|
| 62 | time you run the plug-in. There is no need to restart Tomcat or to |
|---|
| 63 | manually unload the old plug-in code. |
|---|
