source: plugins/base2/net.sf.basedb.illumina/trunk/config/illumina-extended-properties.xml @ 624

Last change on this file since 624 was 624, checked in by Nicklas Nordborg, 16 years ago

References #102: Intensity calculator for Illumina SNP data

The main parts are working. Need more testing and probably better error handling and/or configuration options.

  • Property svn:eol-style set to native
  • Property svn:keywords set to Date Id
File size: 2.4 KB
Line 
1<?xml version="1.0" ?>
2<!DOCTYPE extended-properties SYSTEM "extended-properties.dtd" >
3<!--
4  Extended properties file with definitions for reporter annotations
5  that are specific to the Illumina platform. You should manually
6  add/remove wanted columns and copy this file into your
7  [base2home]/www/WEB-INF/classes/extended-properties/ directory
8-->
9<extended-properties>
10  <class name="ReporterData">
11    <property
12      name="source"
13      title="Source"
14      description=""
15      column="source"
16      type="string"
17      length="255"
18    />
19    <property
20      name="searchKey"
21      title="Search key"
22      description=""
23      column="searchKey"
24      type="string"
25      length="255"
26    />
27    <property
28      name="ilmnGene"
29      title="ILMN Gene"
30      description=""
31      column="ilmnGene"
32      type="string"
33      length="255"
34    />
35    <property
36      name="sourceReferenceId"
37      title="Source reference id"
38      description=""
39      column="sourceReferenceId"
40      type="string"
41      length="255"
42    />
43    <property
44      name="isoformType"
45      title="Isoform type"
46      description=""
47      column="isoformType"
48      type="string"
49      length="255"
50    />
51    <property
52      name="probeChrOrientation"
53      title="Probe chr orientation"
54      description=""
55      column="probeChrOrientation"
56      type="string"
57      length="255"
58    />
59    <property
60      name="probeCoordinates"
61      title="Probe coordinates"
62      description=""
63      column="probeCoordinates"
64      type="string"
65      length="255"
66    />
67    <property
68      name="synonyms"
69      title="Synonyms"
70      description=""
71      column="synonyms"
72      type="string"
73      length="65535"
74    />
75    <property
76      name="controlGroupName"
77      title="Control group name"
78      description=""
79      column="controlGroupName"
80      type="string"
81      length="255"
82    />
83    <property
84      name="controlGroupId"
85      title="Control group id"
86      description=""
87      column="controlGroupId"
88      type="string"
89      length="255"
90    />
91    <property
92      name="controlCompositeMap"
93      title="Control composite map"
94      description=""
95      column="controlCompositeMap"
96      type="string"
97      length="255"
98    />
99    <property 
100      name="ilmnStrand"
101      title="Ilmn strand"
102      description="Strand definition of the SNP"
103      column="ilmnStrand"
104      type="string"
105      length="255"
106    />
107    <property 
108      name="snp"
109      title="SNP"
110      description="Type of SNP"
111      column="snp"
112      type="string"
113      length="255"
114    />
115    <property 
116      name="startPosition"
117      title="Start position"
118      column="startPosition"
119      type="int"
120    />
121  </class>
122</extended-properties>
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