source: plugins/base2/net.sf.basedb.normalizers/tags/1.0/INSTALL

Last change on this file was 932, checked in by Jari Häkkinen, 12 years ago

Addresses #120.

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$Id: INSTALL 932 2008-12-18 11:40:16Z jari $

Copyright (C) 2008 Jari Häkkinen, Martin Svensson
This file is part of the Normalizers plug-in package for BASE
(net.sf.based.normalizers). The package is available at BASE main site is
This is free software; you can redistribute it and/or
modify it under the terms of the GNU General Public License
as published by the Free Software Foundation; either version 3
of the License, or (at your option) any later version.
The software is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
GNU General Public License for more details.
You should have received a copy of the GNU General Public License
along with this program. If not, see <>.

How to install the Normalization plug-ins package for BASE.


  1. BASE 2.7.0 or later.


  1. Unpack the tar.gz file to a directory of your choice.
  2. Copy the normalization-plugins.jar to your BASE plug-ins directory. This directory is specified by the 'plugins.dir' option in your base.config file and defaults to <basedir>/plugins.

    If you have job agents that are running from another location, you must also copy the jar file to a location the job agents has access to.
  3. Log in to BASE as an administrator and run the plug-in auto-installation wizard by going to Administrate -> Plugins -> Definitions and click on the 'New' button.
  4. Select the 'Automatically' option.
  5. The auto-detection should find plug-ins for the algorithms listed below. You should change the 'Install' value to 'yes' for those which should be installed.
    • Average normalization
    • Quantile Normalization
  6. Finish the installation wizard.
  7. Done. The normalization plug-ins are now installed.

Make sure that the job agents have access to the same normalization-plugins.jar file as the Tomcat web server. If the job agents are not running from the same BASE installation directory, you may need to copy the files to a proper location. We recommend that you always put the normalization-plugins.jar inside the BASE server plug-in directory (plugins.dir). If you do, BASE will automatically find the JAR file in job agents. Otherwise, you may have to configure the JAR path manually for each job agent.

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