source: trunk/uk/ac/ebi/Tab2MageImporter/simplied process.txt @ 434

Last change on this file since 434 was 434, checked in by dominic, 14 years ago

added simplified tab2mage importer process .txt file

  • Property svn:eol-style set to native
File size: 2.0 KB
Line 
1Simplified Process for Running Tab2Mage Importer on a new BASE Installation
2============================================================
3
4AFFYMETRIX
5--------------------
6- Install a new base instance
7
8- log in as root and create an administrator account,
9
10- log into base as the administrator, using the newly created account
11
12- go to Administrate -> Plugins -> Definitions
13  Click New to create the Affymetrix Array Design Batch Importer Plugin. Follow  further instructions on : plugin website if required.
14
15- go to View - > File
16  upload zip files containing  all  the array design for affymetrix experiments
17
18- go to LIMS -> Array Designs ->
19  click on the import tab
20  on the dialog, select affymetrix array design batch importer and follow the process through to finish
21  all the array deisgn are created.
22
23- go to Administrate -> Plugins -> Definitions
24  Click New to create, share and configure the Annotation Types and Cv Loader Plugin.
25  use the sample comfiguration file on the plugin site(annotationtypecvimporter.xml)  to configure the plugin.
26  Upload the file into base
27  go to Adminstrate -> Plugin Configuration
28  Click the Import tab, select "Plugin Configuration Importer"
29  click browse to select the uploaded xml file (annotationtypecvimporter.xml), click next and finish
30
31  Follow further instructions on : plugin website if required
32
33- go to Administrate -> Plugins -> Definitions
34  Click New to create and share the Tab2Mage Importer Plugin. Follow  further instructions on : plugin website if required.
35
36- go to View - > File and upload zip files containing  all  the raw data files and the tab2mage file for the affymetrix experiment
37
38- go to View ->Experiment
39  create a new Affymetrix experiment
40  on experiment view page click on the import tab and select Tab2Mage Importer
41  Run the Tab2Mage Importer, following the instructions on plugin website
42
43
44PRESTO! following the above process should upload the experiment for you.
45 
46 
47------------------------------------------------------------------------------------------------------------
48
Note: See TracBrowser for help on using the repository browser.