Changeset 1000

Timestamp:

Mar 27, 2009, 3:37:12 PM (12 years ago)

Author:

Jari Häkkinen

Message:

storeResult interface change, some code moved to super class.

File:

• plugins/base2/net.sf.basedb.normalizers/trunk/src/net/sf/basedb/plugins/qQuantileNormalization.java (modified) (1 diff)

plugins/base2/net.sf.basedb.normalizers/trunk/src/net/sf/basedb/plugins/qQuantileNormalization.java

@@ -202 +202 @@
 
 
-  protected void storeResult(DbControl dc, String name)
+  protected void storeResult(SpotBatcher batcher)
+    throws BaseException
   {
-    // I (Jari) don't like this method. A lot of thing should be moved
-    // to the abstract super class.
     if (debug_output) System.err.println("qQN: Storing new bioassayset");
     try
     {
-      // Create Transformation
-      Transformation t = sourceBAS.newTransformation(this.getCurrentJob(dc));
-      t.setName(about.getName());
-      dc.saveItem(t);
-
-      // Create the normalized bioassay set
-      BioAssaySet child = t.newProduct(null, "new", true);
-      child.setName(Values.getString((String)job.getValue(CHILD_NAME),
-                                     sourceBAS.getName()));
-      child.setDescription((String)job.getValue(CHILD_DESCRIPTION));
-      dc.saveItem(child);
-
-      // Batcher for inserting normalized data
-      SpotBatcher batcher = child.getSpotBatcher();
-
       BufferedReader metainput =
         new BufferedReader(new FileReader(getExecDirectory() +