Changeset 1000
- Timestamp:
- Mar 27, 2009, 3:37:12 PM (13 years ago)
- File:
-
- 1 edited
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plugins/base2/net.sf.basedb.normalizers/trunk/src/net/sf/basedb/plugins/qQuantileNormalization.java
r998 r1000 202 202 203 203 204 protected void storeResult(DbControl dc, String name) 204 protected void storeResult(SpotBatcher batcher) 205 throws BaseException 205 206 { 206 // I (Jari) don't like this method. A lot of thing should be moved207 // to the abstract super class.208 207 if (debug_output) System.err.println("qQN: Storing new bioassayset"); 209 208 try 210 209 { 211 // Create Transformation212 Transformation t = sourceBAS.newTransformation(this.getCurrentJob(dc));213 t.setName(about.getName());214 dc.saveItem(t);215 216 // Create the normalized bioassay set217 BioAssaySet child = t.newProduct(null, "new", true);218 child.setName(Values.getString((String)job.getValue(CHILD_NAME),219 sourceBAS.getName()));220 child.setDescription((String)job.getValue(CHILD_DESCRIPTION));221 dc.saveItem(child);222 223 // Batcher for inserting normalized data224 SpotBatcher batcher = child.getSpotBatcher();225 226 210 BufferedReader metainput = 227 211 new BufferedReader(new FileReader(getExecDirectory() +
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