Changeset 1002

Timestamp:

Mar 27, 2009, 5:06:17 PM (14 years ago)

Author:

Jari Häkkinen

Message:

Added support to optionally select assays.

File:

• plugins/base2/net.sf.basedb.pluginutilities/trunk/src/net/sf/basedb/plugins/AbstractRunBinaryPlugin.java (modified) (3 diffs)

plugins/base2/net.sf.basedb.pluginutilities/trunk/src/net/sf/basedb/plugins/AbstractRunBinaryPlugin.java

@@ -27 +27 @@
 
 import net.sf.basedb.core.BaseException;
+import net.sf.basedb.core.BioAssay;
 import net.sf.basedb.core.BioAssaySet;
 import net.sf.basedb.core.DbControl;
+import net.sf.basedb.core.ItemParameterType;
 import net.sf.basedb.core.Job;
 import net.sf.basedb.core.PluginDefinition;
@@ -225 +227 @@
       parameters.add(getChildDescriptionParameter(null, null, null));
 
+      if (selectBASconfigure) {
+        DbControl dc = null;
+        try
+        {
+          dc = sc.newDbControl();
+          if (sourceBAS == null) sourceBAS = getSourceBioAssaySet(dc);
+          List<BioAssay> assays = sourceBAS.getBioAssays().list(dc);
+          PluginParameter<BioAssay> par = new PluginParameter<BioAssay>
+            ( "selectBAS", "Select assays", selectBASdescription,
+              new ItemParameterType<BioAssay>(BioAssay.class, assays.get(0),
+                                              true, 0, assays) );
+          parameters.add(par);
+        }
+        finally
+        {
+          if (dc != null) dc.close();
+        }
+      }
+
       configureJob = new RequestInformation(
         Request.COMMAND_CONFIGURE_JOB, about.getName() + " options",
@@ -360 +381 @@
   protected Plugin.MainType plugin_maintype=null;
   protected BioAssaySet sourceBAS = null;
+  protected BioAssaySet selectBAS = null;
+  protected Boolean selectBASconfigure = false;
+  protected String selectBASdescription = null;
   protected String subprocess_stdin=null;
   protected String subprocess_stdout=null;