Changeset 1034


Ignore:
Timestamp:
Apr 7, 2009, 11:22:26 PM (12 years ago)
Author:
Jari Häkkinen
Message:

Peter says: Use proper classes

File:
1 edited

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  • plugins/base2/net.sf.basedb.normalizers/trunk/src/c++/bin/qQN.cc

    r1023 r1034  
    3030#include <yat/utility/CommandLine.h>
    3131#include <yat/utility/Matrix.h>
    32 #include <yat/utility/OptionArg.h>
    3332#include <yat/utility/OptionHelp.h>
     33#include <yat/utility/OptionInFile.h>
     34#include <yat/utility/OptionOutFile.h>
    3435#include <yat/utility/OptionSwitch.h>
    3536
     
    4950{
    5051  CommandLine cmd;
    51   OptionArg<std::string> assay(cmd, "assay-data", "assay annotations", true);
    52   OptionArg<std::string> indata(cmd, "in-data", "data to be normalized");
    53   OptionArg<std::string> outdata(cmd, "out-data", "normalized data");
     52  OptionInFile assay(cmd, "assay-data", "assay annotations", true);
     53  OptionInFile indata(cmd, "in-data", "data to be normalized");
     54  OptionOutFile outdata(cmd, "out-data", "normalized data");
    5455  OptionHelp help(cmd);
    5556  help.synopsis()=(std::string("See ") +
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