Changeset 1034 for plugins/base2/net.sf.basedb.normalizers/trunk/src/c++/bin/qQN.cc

Timestamp:

Apr 7, 2009, 11:22:26 PM (14 years ago)

Author:

Jari Häkkinen

Message:

Peter says: Use proper classes

File:

• plugins/base2/net.sf.basedb.normalizers/trunk/src/c++/bin/qQN.cc (modified) (2 diffs)

plugins/base2/net.sf.basedb.normalizers/trunk/src/c++/bin/qQN.cc

@@ -30 +30 @@
 #include <yat/utility/CommandLine.h>
 #include <yat/utility/Matrix.h>
-#include <yat/utility/OptionArg.h>
 #include <yat/utility/OptionHelp.h>
+#include <yat/utility/OptionInFile.h>
+#include <yat/utility/OptionOutFile.h>
 #include <yat/utility/OptionSwitch.h>
 
@@ -49 +50 @@
 {
   CommandLine cmd;
-  OptionArg<std::string> assay(cmd, "assay-data", "assay annotations", true);
-  OptionArg<std::string> indata(cmd, "in-data", "data to be normalized");
-  OptionArg<std::string> outdata(cmd, "out-data", "normalized data");
+  OptionInFile assay(cmd, "assay-data", "assay annotations", true);
+  OptionInFile indata(cmd, "in-data", "data to be normalized");
+  OptionOutFile outdata(cmd, "out-data", "normalized data");
   OptionHelp help(cmd);
   help.synopsis()=(std::string("See ") +