Changeset 1061

Timestamp:

May 11, 2009, 1:23:32 PM (14 years ago)

Author:

Nicklas Nordborg

Message:

References #214: Move TDMS export to this extension

The new exporter is in place with some test code. Still needs a plug-in interface for this. Updated requirements to BASE 2.12.

Location:

extensions/net.sf.basedb.mev/trunk

Files:

• META-INF/extensions.xml (modified) (1 diff)
• README (modified) (1 diff)
• build.xml (modified) (2 diffs)
• resources/launch_export.jsp (modified) (2 diffs)
• resources/scripts/mev.jsp (modified) (1 diff)
• resources/test.xjsp (added)
• src/net/sf/basedb/mev/export (added)
• src/net/sf/basedb/mev/export/TdmsExporter.java (added)

extensions/net.sf.basedb.mev/trunk/META-INF/extensions.xml

@@ -67 +67 @@
   </extension>
     <extension
+    id="net.sf.basedb.mev.testlaunchexport"
+    extends="net.sf.basedb.clients.web.bioassayset.list.tools"
+    >
+    <index>3</index>
+    <about>
+      <name>Test - MeV TDMS Export</name>
+      <description>
+        Adds an action to the "Tools" column that exports data to a
+        MeV TDMS file. For debug only.
+      </description>
+    </about>
+    <action-factory>
+      <factory-class>
+        net.sf.basedb.mev.factory.MevButtonFactory
+      </factory-class>
+      <parameters>
+        <requireSpotData>true</requireSpotData>
+        <title>Test MeV TDMS file</title>
+        <tooltip>Immediately creates a MeV TDMS file from the data in this bioassay set</tooltip>
+        <onClick>MeV.testTDMS($ID$)</onClick>
+        <icon>~/images/tm4_export.png</icon>
+        <script>~/scripts/mev.jsp</script>
+      </parameters>
+    </action-factory>
+  </extension>
+  
+  <extension
     id="net.sf.basedb.mev.options"
     extends="net.sf.basedb.clients.web.menu.extensions"

extensions/net.sf.basedb.mev/trunk/README

@@ -1 +1 @@
 == Requirements ==
 
- 1. BASE 2.11.0 or later.
+ 1. BASE 2.12.0 or later.
  
 == Introduction ==

extensions/net.sf.basedb.mev/trunk/build.xml

@@ -23 +23 @@
   <property name="javac.target" value="1.5" />
   <property name="javac.encoding" value="UTF-8" />
-  <property name="depend.jars" value="http://base2.thep.lu.se/base/jars/2.11.0" />
+  <property name="depend.jars" value="http://base2.thep.lu.se/base/jars/2.12.0" />
 
   <!-- set up classpath for compiling -->
@@ -101 +101 @@
     description="Checks that the BASE2Core.jar, BASE2Webclient.jar, BASE2CorePlugins.jar and BASE2WSClient.jar exists."
     >
-    <available classname="net.sf.basedb.core.Application" 
+    <available classname="net.sf.basedb.util.export.spotdata.AbstractBioAssaySetExporter" 
       classpathref="classpath" property="base2core" />
     <available classname="net.sf.basedb.plugins.BioAssaySetExporter" 

extensions/net.sf.basedb.mev/trunk/resources/launch_export.jsp

@@ -76 +76 @@
   catch (Throwable t)
   {}
-  
+
 }
 finally
@@ -106 +106 @@
   Do you wish to create one with the BioAssaySetExporter plug-in?
   <br><br>
+  <a href="test.xjsp?ID=<%=ID%>&bioassayset_id=<%=bioAssaySetId%>">Test new export</a>
   </base:note>
   <p>

extensions/net.sf.basedb.mev/trunk/resources/scripts/mev.jsp

@@ -25 +25 @@
     Main.openPopup(url, 'CreateTDMSFile', 400, 300);
   }
+
+  this.testTDMS = function(bioAssaySetId)
+  {
+    var url = '<%=homeUrl%>/test.xjsp';
+    url += '?ID='+getSessionId();
+    url += '&bioassayset_id=' + bioAssaySetId;
+    Main.openPopup(url, 'TestCreateTDMSFile', 400, 300);
+  }
+
 }
 ();