Changeset 1076

Timestamp:

May 15, 2009, 5:27:03 PM (14 years ago)

Author:

Jari Häkkinen

Message:

Adding context checks for number of channels.

File:

• plugins/base2/net.sf.basedb.pluginutilities/trunk/src/net/sf/basedb/plugins/AbstractRunBinaryPlugin.java (modified) (4 diffs)

plugins/base2/net.sf.basedb.pluginutilities/trunk/src/net/sf/basedb/plugins/AbstractRunBinaryPlugin.java

@@ -30 +30 @@
 import net.sf.basedb.core.BioAssaySet;
 import net.sf.basedb.core.DbControl;
+import net.sf.basedb.core.Experiment;
+import net.sf.basedb.core.Item;
 import net.sf.basedb.core.ItemParameterType;
 import net.sf.basedb.core.Job;
@@ -256 +258 @@
           List<BioAssay> assays = sourceBAS.getBioAssays().list(dc);
           PluginParameter<BioAssay> par = new PluginParameter<BioAssay>
-            ( selectBASid, "Select assays", selectBASdescription,
+            ( selectBASid, selectBASlabel, selectBASdescription,
               new ItemParameterType<BioAssay>(BioAssay.class, assays.get(0),
                                               true, assays.size(), assays) );
@@ -316 +318 @@
     signalHandler = new ThreadSignalHandler();
     return signalHandler;
+  }
+
+
+  public String isInContext(GuiContext context, Object item)
+  {
+    DbControl dc = sc.newDbControl();
+    try {
+      Experiment e=Experiment.getById
+        (dc, sc.getCurrentContext(Item.EXPERIMENT).getId());
+      int channels=e.getRawDataType().getChannels();
+      if (channels<minNofChannels || channels>maxNofChannels)
+        return ("Number of channels must be between " + minNofChannels +
+                " and " + maxNofChannels);
+    }
+    finally {
+      if (dc != null)
+        dc.close();
+    }
+    return null;
   }
 
@@ -415 +436 @@
   protected BioAssaySet sourceBAS = null;
   protected BioAssaySet selectBAS = null;
+
+  protected int minNofChannels=0;
+  protected int maxNofChannels=0;
+
   protected Boolean selectBASconfigure = false;
   protected String selectBASdescription = null;
   protected final String selectBASid = "selectBAS";
+  protected String selectBASlabel = "Select assays";
 
   // files