Changeset 1093


Ignore:
Timestamp:
May 27, 2009, 2:16:32 PM (12 years ago)
Author:
Martin Svensson
Message:

References #182 The information is now inserted in the README file, in the section about Illumina Bead Summary (IBS) files.

File:
1 edited

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  • plugins/base2/net.sf.basedb.illumina/trunk/README

    r1032 r1093  
    9191 - ''' Mean GRN ''': The mean intensity.
    9292 - ''' Dev GRN ''': Standard deviation of the mean intensity.
     93
     94IBS files may contain some rows with Illumicodes that are not represented in the
     95BGX files.
     96Our interpretation is that some probes that used to be annotated with a gene has
     97later been considered poor by Illumina (as we have only observed an increase
     98in the number of unmatched probes for later bgx revisions). To avoid that the
     99raw data importer fails cause of some probes, listed in the IBS-file, couldn't
     100be found in BASE - you have to set plug-in parameter 'Probe not found=skip',
     101when importing data from an IBS-file into BASE.
    93102
    94103A new raw data type has been defined in illumina-raw-data-types.xml
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