Changeset 1142

Timestamp:

Jun 25, 2009, 9:49:18 AM (14 years ago)

Author:

Martin Svensson

Message:

Fixes #180 Overview plot extensions for Illumina expression

File:

• plugins/base2/net.sf.basedb.illumina/trunk/INSTALL (modified) (4 diffs)

plugins/base2/net.sf.basedb.illumina/trunk/INSTALL

@@ -34 +34 @@
  1. Unpack the tar.gz file to a directory of your choice. 
  2. Stop your Tomcat server that is running BASE and all job agents, if any.
- 3. Copy the illumina-plugins.jar to your BASE plug-ins directory. This directory 
-    is specified by the 'plugins.dir' option in your base.config file and defaults 
-    to <basedir>/plugins.[[BR]]   
+ 3. Copy the illumina-plugins.jar to <basedir>''/www/WEB-INF/extensions/''.[[BR]]   
     If you have job agents that are running from another location, you must also 
     copy the jar file to a location the job agents has access to.   
@@ -66 +64 @@
     program to create a scanner and/or software entry.
  13. Finish the job registration and wait for the plug-in to finish.
- 14. Done. The Illumina plug-ins are now installed. You can now restart any job
+ 14. If the extension auto-installation is disabled a manual scan is necessary to detect/register the new illumina-extensions.
+   Click on menu: ''Extensions -> Manual scan...''
+ 15. Done. The Illumina plug-ins are now installed. You can now restart any job
     agents as well.
     
@@ -73 +73 @@
 the Tomcat web server. If the job agents are not running from the same BASE 
 installation directory, you may need to copy the files to a proper location.
-We recommend that you always put the illumina-plugins.jar inside the
-plugins.dir directory. If you do, BASE will automatically find the JAR file
-in job agents. Otherwise, you may have to configure the JAR path manually
-for each job agent.
+'''Notice: you may have to configure the JAR path manually for each job agent.'''
 
 == Upgrade ==
@@ -88 +85 @@
  4. Step 7-9 are optional and only needed if the new release contains plugins or changed/new pluginconfigurations
     that you want to install. [[BR]]
-    '''Notice1:''' Already installed plugins do not need to be re-installed, but updated configurations do.[[BR]]
+    '''Notice1:''' Already installed plugins do not need to be re-installed(unless the jar-path has been changed), but updated configurations do.[[BR]]
     '''Notice2:''' If the existing configuration is not first removed  you will end up with two configurations with the same name. 
+    '''Notice3:''' Upgrading from 1.3.x or less require you to run the installation wizzard even for the installed plugins to update their jar-path.
  5. Step 10-13 are also optional and only necessary when the release comes with new Illumina variants that you want to create.
- 6. Done. The Illumina package is now updated. You can restart any job-agents as well.
+ 6. Do step 14 to update the extensions.
+ 7. Done. The Illumina package is now updated. You can restart any job-agents as well.