Changeset 1187 for plugins/base2

Timestamp:

Feb 11, 2010, 11:01:57 AM (13 years ago)

Author:

Nicklas Nordborg

Message:

Fixes #257: Fix issues with the BGX reporter importer due to changes in the core api of BASE 2.15

File:

• plugins/base2/net.sf.basedb.illumina/trunk/src/net/sf/basedb/illumina/plugins/BgxReporterImporter.java (modified) (3 diffs)

plugins/base2/net.sf.basedb.illumina/trunk/src/net/sf/basedb/illumina/plugins/BgxReporterImporter.java

@@ -110 +110 @@
   private Section currentSection;
   
-  private ParameterValuesProxy confProxy;
+  private ParameterValuesProxy jobParameterProxy;
   
   public BgxReporterImporter()
@@ -127 +127 @@
   public void init(SessionControl sc, ParameterValues configuration, ParameterValues job)
   {
-    this.confProxy = new ParameterValuesProxy(configuration);
-    super.init(sc, this.confProxy, job);
+    this.jobParameterProxy = job == null ? null : new ParameterValuesProxy(job);
+    super.init(sc, configuration, this.jobParameterProxy);
   }
   // -------------------------------------------
@@ -229 +229 @@
       override.put("extendedColumnMapping.controlGroupId", "\\Reporter_Group_id\\");
       override.put("extendedColumnMapping.controlCompositeMap", "\\Reporter_Composite_map\\");
-      confProxy.setOverride(override);
+      jobParameterProxy.setOverride(override);
     }
     else
     {
-      confProxy.setOverride(null);
+      jobParameterProxy.setOverride(null);
     }
   }