Changeset 1217 for plugins/base2

Timestamp:

Mar 26, 2010, 2:15:39 PM (13 years ago)

Author:

Jari Häkkinen

Message:

Addresses #248 and #252. Updated description to describe new features.

File:

• plugins/base2/net.sf.basedb.illumina/trunk/src/net/sf/basedb/illumina/plugins/BackgroundCorrection.java (modified) (1 diff)

plugins/base2/net.sf.basedb.illumina/trunk/src/net/sf/basedb/illumina/plugins/BackgroundCorrection.java

@@ -111 +111 @@
       "A spot is considered to be a negative control spot if it has an " +
       "''Control group name'' exactly matching the string ''negative''.\n\n" +
-      "The only parameter to set is how background intensities should be " +
-      "calculated. Allowed values are median or mean, i.e. the background is " +
-      "either the median or the mean of the negative control spots on the " +
-      "array.\n\n" +
+      "There is one parameter to set that specifies how background " +
+      "intensities should be calculated. Allowed values are median or mean, " +
+      "i.e. the background is either the median or the mean of the negative " +
+      "control spots on the array.\n\n" +
+      "The expression of the background probes is optionally saved to a " +
+      "file. The default is not to save the expression matrix but this can be " +
+      "changed during job configuration.\n\n" +
       "Please send feedback to " +
       Illumina.EMAIL,