Changeset 1295


Ignore:
Timestamp:
Feb 24, 2011, 1:33:54 PM (12 years ago)
Author:
Nicklas Nordborg
Message:

Fixes #280: Plug-in should suggest better job names

Location:
plugins/base2/net.sf.basedb.normalizers/trunk
Files:
6 edited

Legend:

Unmodified
Added
Removed

  • plugins/base2/net.sf.basedb.normalizers/trunk/INSTALL

    r1186 r1295  
    3232== Requirements ==
    3333
    34  1. BASE 2.15.0 or later.
     34 1. BASE 2.17.0 or later.
    3535 2. (Optional) The qQuantile normalization requires a C++ standards
    3636    compliant compiler and the yat library available at

  • plugins/base2/net.sf.basedb.normalizers/trunk/META-INF/base-plugins.xml

    r1084 r1295  
    2626<plugins jarname="%%plugins.jar%%">
    2727  <pluginclass classname="net.sf.basedb.plugins.AverageNormalization">
    28     <minbaseversion>2.12</minbaseversion>
     28    <minbaseversion>2.17</minbaseversion>
    2929    <hasconfigurations/>
    3030  </pluginclass>
    3131  <pluginclass classname="net.sf.basedb.plugins.qQuantileNormalization">
    32     <minbaseversion>2.9</minbaseversion>
     32    <minbaseversion>2.17</minbaseversion>
    3333    <hasconfigurations/>
    3434  </pluginclass>
    3535  <pluginclass classname="net.sf.basedb.plugins.QuantileNormalization">
    36     <minbaseversion>2.9</minbaseversion>
     36    <minbaseversion>2.17</minbaseversion>
    3737    <hasconfigurations/>
    3838  </pluginclass>
    3939  <pluginclass classname="net.sf.basedb.plugins.RankInvariantNormalization">
    40     <minbaseversion>2.9</minbaseversion>
     40    <minbaseversion>2.17</minbaseversion>
    4141    <hasconfigurations/>
    4242  </pluginclass>

  • plugins/base2/net.sf.basedb.normalizers/trunk/build.xml

    r1219 r1295  
    6767
    6868  <property name="depend.BASEjars"
    69     value="http://base2.thep.lu.se/base/jars/2.15.0"
     69    value="http://base2.thep.lu.se/base/jars/2.17.0"
    7070    description="The location of the BASE core JARs that we depend on"
    7171  />

  • plugins/base2/net.sf.basedb.normalizers/trunk/src/net/sf/basedb/plugins/AverageNormalization.java

    r1144 r1295  
    231231        }
    232232       
     233        BioAssaySet bioAssaySet = (BioAssaySet)job.getValue(SOURCE_BIOASSAYSET);
     234        response.setSuggestedJobName("Average normalization on bioassay set '" +
     235            bioAssaySet.getName() + "'");
    233236        response.setDone("Job configuration completed", Job.ExecutionTime.MEDIUM);
    234237      }

  • plugins/base2/net.sf.basedb.normalizers/trunk/src/net/sf/basedb/plugins/QuantileNormalization.java

    r1144 r1295  
    226226        storeValue(job, request, averageMethodParameter);
    227227       
     228        BioAssaySet bioAssaySet = (BioAssaySet)job.getValue(SOURCE_BIOASSAYSET);
     229        response.setSuggestedJobName("Quantile normalization on bioassay set '" +
     230            bioAssaySet.getName() + "'");
     231
    228232        response.setDone("Job configuration completed", Job.ExecutionTime.MEDIUM);
    229233      }

  • plugins/base2/net.sf.basedb.normalizers/trunk/src/net/sf/basedb/plugins/RankInvariantNormalization.java

    r977 r1295  
    138138    storeValue(job, request, ri.getParameter("numIterations"));
    139139   
     140    BioAssaySet bioAssaySet = (BioAssaySet)job.getValue(SOURCE_BIOASSAYSET);
     141    response.setSuggestedJobName("Rank-invariant normalization on bioassay set '" +
     142        bioAssaySet.getName() + "'");
     143
    140144    response.setDone("Job configuration completed", Job.ExecutionTime.MEDIUM);
    141145  }
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