Changeset 1564 for extensions/net.sf.basedb.reggie/trunk/resources/rnaqc_plate_export.jsp

Timestamp:

Mar 16, 2012, 9:44:17 AM (11 years ago)

Author:

Nicklas Nordborg

Message:

References #370: Export run parameters to Caliper XML file

Added entry point to the run parameters exporter in the reggie wizard.

File:

• extensions/net.sf.basedb.reggie/trunk/resources/rnaqc_plate_export.jsp (modified) (6 diffs)

extensions/net.sf.basedb.reggie/trunk/resources/rnaqc_plate_export.jsp

@@ -39 +39 @@
 var debug = false;
 var rnaQcBioPlates = null
+var runParameterConfigurations = null;
 
 function init()
@@ -60 +61 @@
     setFatalError(msg);
   }
-}
-
+  
+  getConfigurationsForRunParametersExporter();
+  var exportHtml = makeButton('Sample names (csv)', "goExport('SAMPLE_NAMES')");
+  for (var i = 0; i < runParameterConfigurations.length; i++)
+  {
+    var config = runParameterConfigurations[i];
+    exportHtml += makeButton('Run parameters: '+config.name + ' (xml)', "goExport('"+config.id+"')");
+  }
+  
+  setInnerHTML('export', exportHtml);
+}
+
+
+function makeButton(title, onClick)
+{
+  var btn = '';
+  btn += '<span class="link" onclick="'+onClick+'">';
+  btn += '<img src="images/export.png">&nbsp;';
+  btn += title+'</span><br>\n';
+  return btn;
+}
+
+function getConfigurationsForRunParametersExporter()
+{
+  var request = Ajax.getXmlHttpRequest();
+  var url = 'RnaQc.servlet?ID=<%=ID%>&cmd=GetConfigurationsForRunParametersExporter';   
+  request.open("GET", url, false);
+  request.send(null);
+
+  if (debug) Main.debug(request.responseText);
+  var response = JSON.parse(request.responseText);  
+  if (response.status != 'ok')
+  {
+    setFatalError(response.message);
+    return false;
+  }
+  
+  runParameterConfigurations = response.configurations;
+}
 
 function getActiveRnaQcBioPlates()
@@ -84 +122 @@
 
 
-function goExport()
+function goExport(exporter)
 {
   var frm = document.forms['reggie']; 
   var bioPlateId = frm.bioPlates[frm.bioPlates.selectedIndex].value;
-  var url = 'RnaQc.servlet?ID=<%=ID%>&cmd=ExportSampleNamesForCaliper&bioPlateId='+bioPlateId;
+  
+  var url;
+  if (exporter == 'SAMPLE_NAMES')
+  {
+    url = 'RnaQc.servlet?ID=<%=ID%>&cmd=ExportSampleNamesForCaliper&bioPlateId='+bioPlateId;
+  }
+  else
+  {
+    url = 'RnaQc.servlet?ID=<%=ID%>&cmd=ExportRunParameters&bioPlateId='+bioPlateId+'&configurationId='+exporter;
+  }
   window.location = url;
 }
@@ -100 +147 @@
   <p:path><p:pathelement 
     title="Reggie" href="<%="index.jsp?ID="+ID%>" 
-    /><p:pathelement title="RNA quality control - Export Caliper sample names" 
+    /><p:pathelement title="RNA quality control - Export Caliper sample names and run parameters" 
     /></p:path>
 
@@ -134 +181 @@
         <td class="status" id="bioplates.status"></td>
         <td class="help"><span id="bioplates.message" class="message" style="display: none;"></span>
-          Select the bioplate to export sample names from. 
+          Select the bioplate to export sample names or run parameters from. 
           <p>
           The list contain RNAQC bioplates without quality score data (determined by 
-          absence of QCRunDate annotation). 
+          absence of QCRunDate annotation).
           <p>
           Tip! You can run the exporter for any bioplate as a regular plug-in by selecting 
           a bioplate from the list at <a 
           href="<%=request.getContextPath()%>/biomaterials/bioplates/index.jsp?ID=<%=ID%>"
-          >Biomaterial LIMS › Bioplates</a> and then use the <b>Export</b> button.
+          >Biomaterial LIMS › Bioplates</a> and then use the <b>Export</b> button. 
+        </td>
+      </tr>
+      
+      <tr valign="top">
+        <td class="prompt">Export</td>
+        <td class="input" id="export" style="white-space: nowrap;">
+          
+        </td>
+        <td class="status" id="export.status"></td>
+        <td class="help"><span id="export.message" class="message" style="display: none;"></span>
+          Select what to export. Typically, you'll need the sample name file and the standard and
+          high sensitivity run files.
         </td>
       </tr>
@@ -150 +209 @@
   </table>
   
-  
   <div class="messagecontainer error" id="errorMessage" style="display: none; width: 800px; margin-left: 20px; margin-bottom: 0px;"></div>
   
   <div id="done" class="success" style="display: none; width: 800px; margin-left: 20px; margin-top: 20px;"></div>
-  
-  <table style="margin-left: 20px; margin-top: 10px;" class="navigation">
-    <tr>
-      <td><base:button id="goexport" title="Export" image="<%=home+"/images/export.png"%>" onclick="goExport()"/></td>
-      <td id="gonext.message" class="message"></td>
-    </tr>
-  </table>
+
   </form>
   </div>