Changeset 1761 for extensions/net.sf.basedb.reggie/branches/ticket-422/resources/libprep/select_rna.jsp

Timestamp:

Dec 3, 2012, 10:50:38 AM (10 years ago)

Author:

Nicklas Nordborg

Message:

References #424: Select RNA items for library preparation

Added a 'special select' menu that can be used to quickly select wells with a certain condition. For example, all empty wells, wells with Stratagene, wells with an error, etc.

File:

• extensions/net.sf.basedb.reggie/branches/ticket-422/resources/libprep/select_rna.jsp (modified) (8 diffs)

extensions/net.sf.basedb.reggie/branches/ticket-422/resources/libprep/select_rna.jsp

@@ -13 +13 @@
 %>
 <%@ taglib prefix="base" uri="/WEB-INF/base.tld" %>
+<%@ taglib prefix="m" uri="/WEB-INF/menu.tld" %>
 <%@ taglib prefix="p" uri="/WEB-INF/path.tld" %>
 <%@ taglib prefix="tbl" uri="/WEB-INF/table.tld" %>
@@ -27 +28 @@
 %>
 <base:page type="default" >
-<base:head scripts="ajax.js,js-draw.js" styles="path.css,toolbar.css">
+<base:head scripts="ajax.js,js-draw.js,menu.js" styles="path.css,toolbar.css,menu.css">
   <link rel="stylesheet" type="text/css" href="../css/reggie.css">
   <link rel="stylesheet" type="text/css" href="../css/plate.css">
@@ -526 +527 @@
   Plate.paint(Plate.getWells());
   
+  var specialSelect = document.getElementById('iconSpecialSelect');
+  specialSelect.addEventListener('mouseenter', showSpecialSelect);
+  specialSelect.addEventListener('mouseleave', hideSpecialSelect);
+  
   graphics = new jsGraphics(document.getElementById('canvas'));
   pen = new jsPen(new jsColor('#2288AA'), 2);
@@ -533 +538 @@
 }
 
+// Show the 'special select' menu
+function showSpecialSelect(event)
+{
+  var specialSelect = document.getElementById('iconSpecialSelect');
+  var pos = Main.getElementPosition(specialSelect);
+  Menu.showTopMenu(document.getElementById('menuSpecialSelect'), pos.left+pos.width/2, pos.top+pos.height/2); 
+}
+
+//Hide the 'special select' menu
+function hideSpecialSelect(event)
+{
+  Menu.hideSubMenus(document.getElementById('menuSpecialSelect'), true);
+}
 
 /**
@@ -1023 +1041 @@
 {
   Plate.toggleSelected(Plate.getPool(pool));
+}
+
+// Some special toogle operations
+function specialToggle(what)
+{
+  var wells = [];
+  if (what == 'all' || what == 'empty')
+  {
+    // All wells or all empty (will be filtered later)
+    wells = Plate.getWells();
+  }
+  else if (what == 'pools' || what == 'empty-pools')
+  {
+    // All primary pools or all empty in the primary pools (will be filtered later)
+    for (var i = 1; i < 5; i++)
+    {
+      wells = wells.concat(Plate.getPool(i));
+    }
+  }
+  else if (what == 'stratagene')
+  {
+    // All wells with 'Stratagene'
+    var tmp = Plate.getWells();
+    for (var i = 0; i < tmp.length; i++)
+    {
+      var well = tmp[i];
+      if (well.rna && well.rna.stratagene) wells[wells.length] = well;
+    }
+  }
+  else if (what == 'replicates')
+  {
+    // All wells with replicated RNA
+    var tmp = Plate.getWells();
+    for (var i = 0; i < tmp.length; i++)
+    {
+      var well = tmp[i];
+      if (well.rna && well.rna.replicate) wells[wells.length] = well;
+    }
+  }
+  else if (what == 'error')
+  {
+    // All wells with an error
+    var tmp = Plate.getWells();
+    for (var i = 0; i < tmp.length; i++)
+    {
+      var well = tmp[i];
+      if (well.hasError()) wells[wells.length] = well;
+    }
+  }
+  else if (what == 'warning')
+  {
+    // All wells with a warning
+    var tmp = Plate.getWells();
+    for (var i = 0; i < tmp.length; i++)
+    {
+      var well = tmp[i];
+      if (well.warning) wells[wells.length] = well;
+    }
+  }
+  
+  // Extra filter for empty wells only
+  if (what.indexOf('empty') != -1)
+  {
+    var tmp = wells;
+    wells = [];
+    for (var i = 0; i < tmp.length; i++)
+    {
+      if (!tmp[i].rna) wells[wells.length] = tmp[i];
+    }
+  }
+  
+  Plate.toggleSelected(wells);
 }
 
@@ -1260 +1350 @@
   color: #0000C8;
 }
-
+#iconSpecialSelect
+{
+  cursor: pointer;
+}
 </style>
 </base:head>
@@ -1281 +1374 @@
   }
   %>
+  
   <form name="reggie" onsubmit="return false;">
   
@@ -1382 +1476 @@
           <th>
             <base:icon image="<%=home+"/images/select_all.png"%>" 
-              onclick="toggleAll()" 
-              tooltip="Select/deselect all wells on the plate" 
-            />
-          </th>
+              id="iconSpecialSelect"
+              tooltip="Select/deselect wells on the plate with specific condition" 
+            >
+            <m:menu
+              id="menuSpecialSelect"
+              style="display: none; font-weight: normal; text-align: left;">
+              <m:menuitem 
+                title="All" 
+                onclick="specialToggle('all')"
+                tooltip="Select/deselect all wells on the plate"
+              />
+              <m:menuitem 
+                title="Pools" 
+                onclick="specialToggle('pools')"
+                tooltip="Select/deselect all pooled wells on the plate"
+              />
+              <m:menuitem 
+                title="All empty" 
+                onclick="specialToggle('empty')"
+                tooltip="Select/deselect all empty wells on the plate"
+              />
+              <m:menuitem 
+                title="Empty in pools" 
+                onclick="specialToggle('empty-pools')"
+                tooltip="Select/deselect all empty pooled wells on the plate"
+              />
+              <m:menuseparator />
+              <m:menuitem 
+                icon="<%=home+"/images/mrnaqc.png"%>"
+                title="Stratagene" 
+                onclick="specialToggle('stratagene')"
+                tooltip="Select/deselect all wells with Stratagene"
+              />
+              <m:menuitem 
+                icon="<%=home+"/images/copy.png"%>"
+                title="Replicates" 
+                onclick="specialToggle('replicates')"
+                tooltip="Select/deselect all wells with replicated RNA"
+              />
+              <m:menuitem 
+                icon="<%=home+"/images/error.png"%>"
+                title="Error" 
+                onclick="specialToggle('error')"
+                tooltip="Select/deselect all wells with an error"
+              />
+              <m:menuitem 
+                icon="<%=home+"/images/warning.png"%>"
+                title="Warning" 
+                onclick="specialToggle('warning')"
+                tooltip="Select/deselect all wells with an error"
+              />
+            </m:menu>
+          </base:icon>
+        </th>
           <%
           for (int c = 0; c < columns; ++c)