Changeset 191

Timestamp:

Oct 31, 2006, 5:02:26 PM (16 years ago)

Author:

Jari Häkkinen

Message:

Changed position to start at 1 instead of 0 in coherence with BASE core.

Location:

trunk/se/lu/thep/affymetrix

Files:

• ChangeLog (modified) (1 diff)
• RMAExpress.java (modified) (2 diffs)

trunk/se/lu/thep/affymetrix/ChangeLog

@@ -24 +24 @@
 
 
+version 0.5 (revision 191):
+  - Changed starting position to 1 from 0 (zero) when expression
+    values are store into the database. This is more consistent with
+    the BASE treatment of positions.
+
 version 0.4 (revision 190):
   - Fixed installation glitches.

trunk/se/lu/thep/affymetrix/RMAExpress.java

@@ -112 +112 @@
       if (request.getCommand().equals(Request.COMMAND_CONFIGURE_JOB)) {
         List<Throwable> errors = validateRequestParameters
-          (configureJob.getParameters(), request);
+          (getConfigureJobParameters(context).getParameters(), request);
         if (errors != null) {
           response.setError(errors.size() +
@@ -397 +397 @@
       }
 
-      int position=0;
+      int position=1; // Use 1 for consistency with BASE usage if position
       ReporterBatcher rbatcher = ReporterBatcher.getNew(dc);
       PositionBatcher pbatcher = root.getPositionBatcher();